Wall clock time and date at job start Tue Mar 31 2020 14:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00191 * 2 1 4 4 H 1.48500 * 109.47409 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46984 * 299.99515 * 3 2 1 6 6 H 1.48509 * 109.47029 * 59.99177 * 3 2 1 7 7 C 1.37884 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99353 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99871 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50453 * 299.91500 * 9 7 2 11 11 C 1.53116 * 109.50342 * 59.99834 * 9 7 2 12 12 C 1.53121 * 109.16062 * 177.59116 * 11 9 7 13 13 C 1.53033 * 109.28054 * 302.34682 * 12 11 9 14 14 N 1.46846 * 109.52077 * 59.17684 * 13 12 11 15 15 C 1.46909 * 110.99818 * 174.16291 * 14 13 12 16 16 C 1.50695 * 109.47328 * 63.71618 * 15 14 13 17 17 C 1.35348 * 126.91331 * 267.28529 * 16 15 14 18 18 N 1.33772 * 106.50036 * 179.97438 * 17 16 15 19 19 N 1.28642 * 108.88308 * 359.97438 * 18 17 16 20 20 N 1.28720 * 110.17489 * 359.75278 * 19 18 17 21 21 C 1.46504 * 125.86299 * 180.23955 * 20 19 18 22 22 C 1.50702 * 109.47192 * 276.69595 * 21 20 19 23 23 C 1.38234 * 119.99874 * 264.54242 * 22 21 20 24 24 C 1.38227 * 119.99990 * 179.74344 * 23 22 21 25 25 C 1.38234 * 120.00120 * 0.55373 * 24 23 22 26 26 C 1.38239 * 119.99722 * 359.70320 * 25 24 23 27 27 C 1.38225 * 120.00094 * 84.81577 * 22 21 20 28 28 C 1.46845 * 111.20322 * 298.25786 * 14 13 12 29 29 H 0.96994 * 120.00138 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.52389 * 57.68627 * 11 9 7 31 31 H 1.08998 * 109.57668 * 297.53219 * 11 9 7 32 32 H 1.09004 * 109.50377 * 182.40057 * 12 11 9 33 33 H 1.09005 * 109.50030 * 62.28737 * 12 11 9 34 34 H 1.09006 * 109.46260 * 299.16562 * 13 12 11 35 35 H 1.08995 * 109.46471 * 179.19671 * 13 12 11 36 36 H 1.09005 * 109.46920 * 183.71775 * 15 14 13 37 37 H 1.08998 * 109.46830 * 303.71502 * 15 14 13 38 38 H 1.08000 * 126.74914 * 359.93844 * 17 16 15 39 39 H 1.08997 * 109.47013 * 36.69855 * 21 20 19 40 40 H 1.09007 * 109.46656 * 156.69728 * 21 20 19 41 41 H 1.08002 * 120.00136 * 0.02562 * 23 22 21 42 42 H 1.08003 * 120.00427 * 180.27243 * 24 23 22 43 43 H 1.08002 * 120.00637 * 179.72171 * 25 24 23 44 44 H 1.08000 * 120.00024 * 180.02562 * 26 25 24 45 45 H 1.08005 * 119.99937 * 0.02562 * 27 22 21 46 46 H 1.08997 * 109.46861 * 181.76340 * 28 14 13 47 47 H 1.09008 * 109.45926 * 301.72891 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6249 -2.5579 0.8908 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3448 -3.9348 -1.2725 13 6 0.6952 -5.0569 -1.2400 14 7 1.5110 -4.9347 -0.0251 15 6 2.4286 -6.0741 0.1096 16 6 3.4047 -6.0716 -1.0385 17 6 3.2761 -6.7262 -2.2162 18 7 4.3704 -6.4409 -2.9308 19 7 5.1262 -5.6608 -2.2415 20 7 4.5828 -5.4093 -1.1020 21 6 5.1456 -4.5559 -0.0525 22 6 6.1249 -5.3520 0.7710 23 6 5.7136 -5.9486 1.9482 24 6 6.6106 -6.6833 2.7008 25 6 7.9217 -6.8118 2.2823 26 6 8.3344 -6.2107 1.1078 27 6 7.4359 -5.4809 0.3522 28 6 2.2448 -3.6629 -0.0038 29 1 -0.4850 0.8400 -0.0004 30 1 0.9923 -2.4828 -2.1398 31 1 -0.3670 -1.7793 -1.2302 32 1 -0.9400 -4.0164 -2.1820 33 1 -0.9960 -4.0168 -0.4022 34 1 1.3374 -4.9825 -2.1177 35 1 0.1885 -6.0219 -1.2417 36 1 2.9736 -5.9925 1.0501 37 1 1.8582 -7.0030 0.0997 38 1 2.4524 -7.3555 -2.5191 39 1 5.6584 -3.7092 -0.5088 40 1 4.3429 -4.1919 0.5890 41 1 4.6903 -5.8446 2.2775 42 1 6.2882 -7.1531 3.6183 43 1 8.6237 -7.3820 2.8726 44 1 9.3586 -6.3115 0.7805 45 1 7.7584 -5.0107 -0.5651 46 1 2.8636 -3.6155 0.8923 47 1 2.8797 -3.5951 -0.8873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597177448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:54 Heat of formation + Delta-G solvation = 108.439002 kcal Electronic energy + Delta-G solvation = -28517.081656 eV Core-core repulsion = 24893.960955 eV Total energy + Delta-G solvation = -3623.120701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.34810 -40.27515 -39.88870 -36.25979 -35.79597 -33.97091 -32.40197 -31.90951 -31.83049 -31.52925 -28.28808 -27.22868 -26.95351 -24.25628 -23.76637 -23.44948 -22.95164 -22.76527 -21.51066 -20.14395 -18.66448 -18.41173 -17.94406 -17.17031 -16.87489 -16.49698 -16.14007 -16.06118 -15.89550 -15.46557 -15.22338 -14.98055 -14.46372 -14.38920 -14.27886 -14.16947 -14.03330 -13.87315 -13.51964 -13.19603 -12.98888 -12.90730 -12.70615 -12.56213 -12.42091 -12.32887 -11.97379 -11.90671 -11.74309 -11.74030 -11.43614 -11.12591 -10.89713 -10.65543 -10.40005 -10.16656 -9.91703 -9.90741 -9.34837 -8.10267 -6.23539 0.11338 0.41453 0.60095 1.36884 1.40071 1.49243 1.52848 1.57035 2.40007 2.81853 3.05006 3.17700 3.33021 3.47028 3.54112 3.77383 4.00052 4.05315 4.07239 4.14768 4.22059 4.22854 4.30512 4.36577 4.48623 4.53433 4.55431 4.63698 4.72599 4.75952 4.82581 4.89664 4.93520 4.98904 5.06666 5.08473 5.13559 5.22412 5.39044 5.45546 5.49938 5.51233 5.53086 5.58935 5.61704 5.91357 5.99362 6.05148 6.15508 6.20427 6.40313 6.88828 7.44460 7.49856 8.94336 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.004307 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.240445 B = 6498.875222 C = 7813.952216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.054 3.946 10 H 0.006 0.994 11 C -0.105 4.105 12 C -0.112 4.112 13 C 0.064 3.936 14 N -0.523 5.523 15 C 0.123 3.877 16 C -0.038 4.038 17 C -0.052 4.052 18 N -0.306 5.306 19 N -0.119 5.119 20 N -0.268 5.268 21 C 0.139 3.861 22 C -0.128 4.128 23 C -0.105 4.105 24 C -0.124 4.124 25 C -0.109 4.109 26 C -0.130 4.130 27 C -0.107 4.107 28 C 0.078 3.922 29 H 0.260 0.740 30 H 0.008 0.992 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.018 0.982 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.135 0.865 38 H 0.213 0.787 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.142 0.858 45 H 0.119 0.881 46 H 0.069 0.931 47 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.902 -16.331 5.568 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.035 3.965 10 H 0.025 0.975 11 C -0.143 4.143 12 C -0.150 4.150 13 C -0.063 4.063 14 N -0.245 5.245 15 C -0.006 4.006 16 C -0.173 4.173 17 C -0.211 4.211 18 N -0.171 5.171 19 N -0.097 5.097 20 N -0.062 5.062 21 C 0.019 3.981 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.142 4.142 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.126 4.126 28 C -0.049 4.049 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.153 0.847 38 H 0.229 0.771 39 H 0.123 0.877 40 H 0.143 0.857 41 H 0.155 0.845 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.160 0.840 45 H 0.137 0.863 46 H 0.087 0.913 47 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 10.660 -15.917 5.041 19.809 hybrid contribution 0.022 1.524 -0.447 1.588 sum 10.682 -14.393 4.594 18.504 Atomic orbital electron populations 1.70018 1.07022 1.26919 1.51208 1.25626 0.95563 1.02005 0.94893 0.85702 0.79208 0.80379 0.77559 1.19232 1.21139 1.20350 1.21506 0.92844 0.92167 1.50651 0.93195 1.18581 0.92957 0.91142 0.93831 0.97535 1.21469 0.99067 0.96720 0.97088 1.21595 0.97641 0.94563 1.01160 1.22094 0.94691 0.99791 0.89738 1.62389 1.22320 1.01568 1.38194 1.21233 0.89966 0.96795 0.92644 1.23675 0.91036 0.99801 1.02785 1.23846 0.99945 1.05509 0.91815 1.74987 1.04321 1.11851 1.25904 1.78178 1.22285 1.16197 0.93059 1.47519 1.14082 1.31827 1.12774 1.21400 0.98462 0.91269 0.86952 1.19761 0.94414 1.01854 0.96869 1.21349 1.00954 0.96270 0.93729 1.21502 0.93500 0.98544 1.00612 1.21630 0.96658 0.98311 0.96097 1.21445 1.00387 0.97498 0.95455 1.21243 0.93072 0.98648 0.99652 1.22209 0.95603 0.89276 0.97813 0.93104 0.97322 0.92424 0.91674 0.92189 0.96364 0.87839 0.88313 0.84729 0.77073 0.87669 0.85680 0.84495 0.83098 0.83141 0.83992 0.86302 0.91253 0.97549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.02 11.35 21.45 0.24 -51.78 16 2 C 0.02 1.00 5.30 84.66 0.45 1.45 16 3 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.53 -28.55 8.56 25.60 0.22 -28.33 16 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 9 C 0.05 2.59 2.26 -11.49 -0.03 2.56 16 10 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 11 C -0.11 -4.96 5.02 30.67 0.15 -4.80 16 12 C -0.11 -4.06 6.09 30.65 0.19 -3.87 16 13 C 0.06 1.94 4.98 86.32 0.43 2.37 16 14 N -0.52 -15.83 4.86 -900.91 -4.38 -20.21 16 15 C 0.12 2.78 5.50 85.55 0.47 3.25 16 16 C -0.04 -1.03 4.64 41.35 0.19 -0.84 16 17 C -0.05 -1.46 10.97 83.73 0.92 -0.55 16 18 N -0.31 -10.63 12.41 -58.26 -0.72 -11.35 16 19 N -0.12 -4.15 13.17 37.02 0.49 -3.66 16 20 N -0.27 -8.06 2.89 -338.09 -0.98 -9.03 16 21 C 0.14 3.69 5.43 85.63 0.46 4.16 16 22 C -0.13 -2.94 5.46 -19.87 -0.11 -3.05 16 23 C -0.10 -2.01 9.68 22.27 0.22 -1.79 16 24 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 25 C -0.11 -1.65 10.05 22.27 0.22 -1.42 16 26 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 27 C -0.11 -2.40 9.72 22.27 0.22 -2.18 16 28 C 0.08 2.96 3.03 86.33 0.26 3.23 16 29 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.06 3.10 6.15 -2.39 -0.01 3.08 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.02 0.60 6.76 -2.38 -0.02 0.59 16 35 H 0.10 2.34 8.09 -2.39 -0.02 2.32 16 36 H 0.10 1.95 6.73 -2.38 -0.02 1.93 16 37 H 0.13 2.18 8.10 -2.39 -0.02 2.16 16 38 H 0.21 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.11 2.89 8.12 -2.39 -0.02 2.87 16 40 H 0.13 3.32 3.97 -2.38 -0.01 3.31 16 41 H 0.14 2.25 6.99 -2.91 -0.02 2.23 16 42 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 43 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.12 2.71 8.06 -2.91 -0.02 2.69 16 46 H 0.07 2.46 6.13 -2.39 -0.01 2.44 16 47 H 0.01 0.26 6.32 -2.38 -0.02 0.25 16 Total: -1.00 -67.99 368.59 2.36 -65.62 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.97 Total: 18.80 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 4.71 Total: -33.65 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -5.35 Total: -96.03 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.99 2.36 -65.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.064 kcal (2) G-P(sol) polarization free energy of solvation -67.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds