Wall clock time and date at job start Tue Mar 31 2020 14:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38150 * 120.03099 * 2 1 4 4 C 1.38253 * 120.06364 * 180.02562 * 3 2 1 5 5 C 1.38303 * 120.12995 * 359.97438 * 4 3 2 6 6 C 1.38104 * 120.06467 * 0.02562 * 5 4 3 7 7 C 1.38801 * 120.03212 * 179.73513 * 2 1 3 8 8 N 1.40245 * 120.06426 * 359.97438 * 7 2 1 9 9 C 1.36118 * 125.94386 * 227.38221 * 8 7 2 10 10 C 1.35368 * 106.04789 * 180.02562 * 9 8 7 11 11 C 1.50698 * 126.73000 * 180.02562 * 10 9 8 12 12 N 1.46897 * 109.47384 * 94.99883 * 11 10 9 13 13 C 1.46850 * 110.99993 * 66.04703 * 12 11 10 14 14 C 1.53034 * 109.52527 * 174.16308 * 13 12 11 15 15 C 1.53113 * 109.27775 * 59.17731 * 14 13 12 16 16 C 1.53123 * 109.16180 * 302.34597 * 15 14 13 17 17 H 1.09000 * 109.50408 * 297.71268 * 16 15 14 18 18 C 1.50704 * 109.50190 * 177.59874 * 16 15 14 19 19 H 1.08004 * 119.99358 * 240.00076 * 18 16 15 20 20 C 1.37871 * 120.00373 * 59.99913 * 18 16 15 21 21 N 1.31513 * 119.99827 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 120.00168 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46951 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47174 * 119.99842 * 22 20 18 25 25 H 1.48503 * 109.47107 * 240.00222 * 22 20 18 26 26 C 1.46850 * 110.99854 * 301.83851 * 12 11 10 27 27 N 1.33768 * 106.54070 * 0.02562 * 10 9 8 28 28 N 1.28608 * 109.06143 * 359.73874 * 27 10 9 29 29 H 1.08993 * 109.47131 * 95.35319 * 1 2 3 30 30 H 1.09001 * 109.46772 * 215.35925 * 1 2 3 31 31 H 1.09005 * 109.46818 * 335.35279 * 1 2 3 32 32 H 1.07994 * 119.96739 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.93845 * 179.97438 * 4 3 2 34 34 H 1.08000 * 119.96617 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.03261 * 179.97438 * 6 5 4 36 36 H 1.07997 * 126.97400 * 359.97438 * 9 8 7 37 37 H 1.09003 * 109.47319 * 215.00103 * 11 10 9 38 38 H 1.09005 * 109.46789 * 334.99706 * 11 10 9 39 39 H 1.09006 * 109.46077 * 294.17780 * 13 12 11 40 40 H 1.09003 * 109.46276 * 54.14217 * 13 12 11 41 41 H 1.09000 * 109.50632 * 179.12170 * 14 13 12 42 42 H 1.09004 * 109.50172 * 299.23801 * 14 13 12 43 43 H 1.09001 * 109.52472 * 62.25212 * 15 14 13 44 44 H 1.08999 * 109.52426 * 182.37864 * 15 14 13 45 45 H 0.97007 * 120.00041 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.45779 * 305.85201 * 26 12 11 47 47 H 1.08994 * 109.46404 * 65.82367 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5810 1.1968 -0.0005 5 6 4.2759 0.0011 -0.0005 6 6 3.5901 -1.1977 -0.0005 7 6 2.2017 -1.2017 0.0056 8 7 1.5025 -2.4174 0.0117 9 6 1.7513 -3.4781 0.8277 10 6 0.8466 -4.4278 0.4933 11 6 0.7058 -5.7955 1.1102 12 7 -0.3126 -5.7531 2.1680 13 6 -1.6429 -5.4842 1.6072 14 6 -2.6953 -5.5912 2.7131 15 6 -2.3726 -4.5808 3.8174 16 6 -0.9633 -4.8525 4.3510 17 1 -0.9268 -5.8487 4.7917 18 6 -0.6150 -3.8255 5.3975 19 1 0.2381 -3.1784 5.2561 20 6 -1.3853 -3.7120 6.5354 21 7 -2.4238 -4.5003 6.7077 22 14 -0.9539 -2.4385 7.8322 23 1 0.2508 -1.6835 7.4030 24 1 -2.0921 -1.5002 8.0024 25 1 -0.6768 -3.1200 9.1222 26 6 0.0389 -4.7668 3.1977 27 7 0.1020 -3.9143 -0.4922 28 7 0.5112 -2.7227 -0.7506 29 1 -0.3633 -0.0959 -1.0231 30 1 -0.3633 -0.8381 0.5947 31 1 -0.3633 0.9341 0.4286 32 1 1.6584 2.1313 0.0004 33 1 4.1194 2.1330 -0.0010 34 1 5.3559 0.0048 -0.0014 35 1 4.1333 -2.1312 -0.0010 36 1 2.5160 -3.5480 1.5872 37 1 0.4047 -6.5103 0.3444 38 1 1.6609 -6.1014 1.5374 39 1 -1.6622 -4.4801 1.1834 40 1 -1.8617 -6.2123 0.8260 41 1 -3.6807 -5.3763 2.2998 42 1 -2.6860 -6.5991 3.1281 43 1 -2.4200 -3.5702 3.4117 44 1 -3.0955 -4.6826 4.6269 45 1 -2.9660 -4.4202 7.5081 46 1 1.0415 -4.9739 3.5716 47 1 0.0116 -3.7662 2.7664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:40 Heat of formation + Delta-G solvation = 126.875025 kcal Electronic energy + Delta-G solvation = -28080.629436 eV Core-core repulsion = 24458.308181 eV Total energy + Delta-G solvation = -3622.321255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.37977 -39.77059 -38.20541 -34.89758 -33.81873 -33.11977 -32.18538 -30.35595 -30.22273 -29.79043 -27.30035 -26.24714 -24.92813 -24.14019 -22.76872 -22.00569 -21.75088 -21.02891 -20.46350 -18.66103 -18.00453 -16.78487 -16.33341 -16.20576 -15.36839 -15.12675 -15.03225 -14.66328 -14.32062 -14.11335 -14.02505 -13.86288 -13.58679 -13.15709 -12.76834 -12.58824 -12.52140 -12.34402 -12.21034 -11.83809 -11.74283 -11.68069 -11.52737 -11.27178 -10.96564 -10.82825 -10.67009 -10.59992 -10.47525 -10.02081 -9.79556 -9.48045 -9.27656 -9.17710 -8.99628 -8.84894 -8.66486 -8.28928 -7.73610 -5.96071 -4.02149 0.53989 0.89010 1.74748 2.27075 2.61811 3.23153 3.29032 3.37114 3.39933 4.32736 4.35020 4.40853 4.45329 4.59466 4.69399 4.86645 4.87017 4.98865 5.09785 5.21769 5.31248 5.34025 5.42431 5.51009 5.54027 5.75871 5.81989 5.88286 5.91215 5.97130 6.00797 6.04454 6.11724 6.21324 6.25584 6.31502 6.38378 6.45956 6.59244 6.80627 6.82237 6.83482 7.00025 7.26817 7.43616 7.69233 7.76184 7.83384 8.11027 8.20324 8.50041 8.55466 9.01759 9.61864 11.09871 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010623 B = 0.004141 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.247022 B = 6760.794374 C = 8379.834929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.054 4.054 3 C -0.109 4.109 4 C -0.102 4.102 5 C -0.113 4.113 6 C -0.102 4.102 7 C 0.116 3.884 8 N -0.249 5.249 9 C -0.033 4.033 10 C -0.038 4.038 11 C 0.136 3.864 12 N -0.523 5.523 13 C 0.064 3.936 14 C -0.118 4.118 15 C -0.109 4.109 16 C 0.055 3.945 17 H 0.035 0.965 18 C -0.512 4.512 19 H 0.051 0.949 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.887 3.113 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.067 3.933 27 N -0.254 5.254 28 N -0.080 5.080 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.189 0.811 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.031 0.969 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.090 0.910 45 H 0.259 0.741 46 H 0.057 0.943 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.872 7.750 -14.403 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.056 4.056 3 C -0.127 4.127 4 C -0.121 4.121 5 C -0.132 4.132 6 C -0.122 4.122 7 C 0.025 3.975 8 N -0.037 5.037 9 C -0.182 4.182 10 C -0.177 4.177 11 C 0.005 3.995 12 N -0.245 5.245 13 C -0.064 4.064 14 C -0.156 4.156 15 C -0.147 4.147 16 C 0.036 3.964 17 H 0.053 0.947 18 C -0.551 4.551 19 H 0.070 0.930 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.715 3.285 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.060 4.060 27 N -0.122 5.122 28 N -0.058 5.058 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.206 0.794 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 10.739 7.662 -15.167 20.102 hybrid contribution 1.035 1.362 1.281 2.137 sum 11.774 9.024 -13.886 20.319 Atomic orbital electron populations 1.20853 0.89646 1.03303 1.03566 1.19920 0.97235 0.91178 0.97235 1.21034 0.94272 0.97098 1.00334 1.21336 0.94199 0.98543 0.98000 1.21018 1.00365 0.91373 1.00399 1.21050 0.91274 0.99861 1.00017 1.17428 0.90598 0.82151 1.07295 1.44515 1.23071 1.11380 1.24749 1.23689 1.05697 0.87948 1.00864 1.23204 0.95518 1.01143 0.97805 1.20762 0.97594 0.87922 0.93239 1.62424 1.01436 1.50152 1.10506 1.22032 0.88964 0.98963 0.96468 1.21689 0.95844 1.01345 0.96724 1.21630 1.01803 0.94787 0.96501 1.18665 0.89817 0.97605 0.90299 0.94719 1.21155 1.12246 1.18499 1.03234 0.93042 1.24917 0.95083 0.95848 0.97905 1.69904 1.17094 1.38276 1.27294 0.86619 0.78268 0.81685 0.81896 1.19974 1.21111 1.20973 1.22318 1.00111 0.90996 0.92525 1.75061 1.22071 1.00986 1.14129 1.78379 1.01234 1.10712 1.15439 0.89783 0.91266 0.90883 0.84663 0.85014 0.84707 0.84878 0.79404 0.89489 0.89242 0.95077 0.92221 0.93587 0.92109 0.95539 0.89174 0.93128 0.92440 0.96359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.86 36.01 0.32 -1.11 16 2 C -0.05 -0.63 5.89 -104.44 -0.62 -1.24 16 3 C -0.11 -0.97 9.67 -39.61 -0.38 -1.35 16 4 C -0.10 -0.77 10.04 -39.55 -0.40 -1.16 16 5 C -0.11 -0.87 10.04 -39.61 -0.40 -1.27 16 6 C -0.10 -0.99 9.64 -39.41 -0.38 -1.37 16 7 C 0.12 1.45 6.18 -83.58 -0.52 0.93 16 8 N -0.25 -3.68 2.97 -10.47 -0.03 -3.71 16 9 C -0.03 -0.48 10.28 -16.67 -0.17 -0.66 16 10 C -0.04 -0.61 4.82 -82.77 -0.40 -1.01 16 11 C 0.14 2.06 5.94 -4.98 -0.03 2.03 16 12 N -0.52 -9.79 4.86 -236.11 -1.15 -10.94 16 13 C 0.06 1.21 5.10 -3.83 -0.02 1.19 16 14 C -0.12 -2.44 6.09 -26.65 -0.16 -2.60 16 15 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16 16 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 17 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 18 C -0.51 -14.10 8.56 -34.44 -0.29 -14.39 16 19 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -25.46 11.35 55.43 0.63 -24.83 16 22 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.07 1.43 4.06 -3.83 -0.02 1.42 16 27 N -0.25 -4.50 11.59 33.29 0.39 -4.12 16 28 N -0.08 -1.34 11.40 60.35 0.69 -0.66 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.06 7.17 -51.93 -0.37 0.69 16 31 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.13 1.10 8.03 -52.48 -0.42 0.68 16 36 H 0.19 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.09 1.22 8.06 -51.93 -0.42 0.80 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.03 0.64 6.88 -51.93 -0.36 0.28 16 40 H 0.06 1.04 8.06 -51.93 -0.42 0.62 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.06 1.17 8.12 -51.93 -0.42 0.74 16 47 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -31.54 375.22 -10.01 -41.55 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.27 Total: 1.31 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -3.90 Total: -20.56 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.52 Total: -44.25 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.54 -10.01 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.428 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds