Wall clock time and date at job start Tue Mar 31 2020 14:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38150 * 120.03099 * 2 1 4 4 C 1.38253 * 120.06364 * 180.02562 * 3 2 1 5 5 C 1.38303 * 120.12995 * 359.97438 * 4 3 2 6 6 C 1.38104 * 120.06467 * 0.02562 * 5 4 3 7 7 C 1.38801 * 120.03212 * 179.73513 * 2 1 3 8 8 N 1.40245 * 120.06426 * 359.97438 * 7 2 1 9 9 C 1.36118 * 125.94386 * 227.38221 * 8 7 2 10 10 C 1.35368 * 106.04789 * 180.02562 * 9 8 7 11 11 C 1.50698 * 126.73000 * 180.02562 * 10 9 8 12 12 N 1.46897 * 109.47384 * 94.99883 * 11 10 9 13 13 C 1.46850 * 110.99993 * 66.04703 * 12 11 10 14 14 C 1.53034 * 109.52527 * 174.16308 * 13 12 11 15 15 C 1.53113 * 109.27775 * 59.17731 * 14 13 12 16 16 C 1.53123 * 109.16180 * 302.34597 * 15 14 13 17 17 H 1.09000 * 109.50408 * 297.71268 * 16 15 14 18 18 C 1.50704 * 109.50190 * 177.59874 * 16 15 14 19 19 H 1.08004 * 119.99358 * 240.00076 * 18 16 15 20 20 C 1.37871 * 120.00373 * 59.99913 * 18 16 15 21 21 N 1.31513 * 119.99827 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 120.00168 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46951 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47174 * 119.99842 * 22 20 18 25 25 H 1.48503 * 109.47107 * 240.00222 * 22 20 18 26 26 C 1.46850 * 110.99854 * 301.83851 * 12 11 10 27 27 N 1.33768 * 106.54070 * 0.02562 * 10 9 8 28 28 N 1.28608 * 109.06143 * 359.73874 * 27 10 9 29 29 H 1.08993 * 109.47131 * 95.35319 * 1 2 3 30 30 H 1.09001 * 109.46772 * 215.35925 * 1 2 3 31 31 H 1.09005 * 109.46818 * 335.35279 * 1 2 3 32 32 H 1.07994 * 119.96739 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.93845 * 179.97438 * 4 3 2 34 34 H 1.08000 * 119.96617 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.03261 * 179.97438 * 6 5 4 36 36 H 1.07997 * 126.97400 * 359.97438 * 9 8 7 37 37 H 1.09003 * 109.47319 * 215.00103 * 11 10 9 38 38 H 1.09005 * 109.46789 * 334.99706 * 11 10 9 39 39 H 1.09006 * 109.46077 * 294.17780 * 13 12 11 40 40 H 1.09003 * 109.46276 * 54.14217 * 13 12 11 41 41 H 1.09000 * 109.50632 * 179.12170 * 14 13 12 42 42 H 1.09004 * 109.50172 * 299.23801 * 14 13 12 43 43 H 1.09001 * 109.52472 * 62.25212 * 15 14 13 44 44 H 1.08999 * 109.52426 * 182.37864 * 15 14 13 45 45 H 0.97007 * 120.00041 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.45779 * 305.85201 * 26 12 11 47 47 H 1.08994 * 109.46404 * 65.82367 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5810 1.1968 -0.0005 5 6 4.2759 0.0011 -0.0005 6 6 3.5901 -1.1977 -0.0005 7 6 2.2017 -1.2017 0.0056 8 7 1.5025 -2.4174 0.0117 9 6 1.7513 -3.4781 0.8277 10 6 0.8466 -4.4278 0.4933 11 6 0.7058 -5.7955 1.1102 12 7 -0.3126 -5.7531 2.1680 13 6 -1.6429 -5.4842 1.6072 14 6 -2.6953 -5.5912 2.7131 15 6 -2.3726 -4.5808 3.8174 16 6 -0.9633 -4.8525 4.3510 17 1 -0.9268 -5.8487 4.7917 18 6 -0.6150 -3.8255 5.3975 19 1 0.2381 -3.1784 5.2561 20 6 -1.3853 -3.7120 6.5354 21 7 -2.4238 -4.5003 6.7077 22 14 -0.9539 -2.4385 7.8322 23 1 0.2508 -1.6835 7.4030 24 1 -2.0921 -1.5002 8.0024 25 1 -0.6768 -3.1200 9.1222 26 6 0.0389 -4.7668 3.1977 27 7 0.1020 -3.9143 -0.4922 28 7 0.5112 -2.7227 -0.7506 29 1 -0.3633 -0.0959 -1.0231 30 1 -0.3633 -0.8381 0.5947 31 1 -0.3633 0.9341 0.4286 32 1 1.6584 2.1313 0.0004 33 1 4.1194 2.1330 -0.0010 34 1 5.3559 0.0048 -0.0014 35 1 4.1333 -2.1312 -0.0010 36 1 2.5160 -3.5480 1.5872 37 1 0.4047 -6.5103 0.3444 38 1 1.6609 -6.1014 1.5374 39 1 -1.6622 -4.4801 1.1834 40 1 -1.8617 -6.2123 0.8260 41 1 -3.6807 -5.3763 2.2998 42 1 -2.6860 -6.5991 3.1281 43 1 -2.4200 -3.5702 3.4117 44 1 -3.0955 -4.6826 4.6269 45 1 -2.9660 -4.4202 7.5081 46 1 1.0415 -4.9739 3.5716 47 1 0.0116 -3.7662 2.7664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597177897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:39 Heat of formation + Delta-G solvation = 108.655507 kcal Electronic energy + Delta-G solvation = -28081.419494 eV Core-core repulsion = 24458.308181 eV Total energy + Delta-G solvation = -3623.111313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.51727 -40.55835 -39.79791 -36.20314 -35.32052 -33.99150 -33.85520 -31.76040 -31.65470 -31.05104 -28.15219 -27.64431 -26.92874 -25.10550 -24.11929 -23.24527 -23.05008 -22.43159 -21.57296 -20.29496 -19.10819 -18.45144 -17.76583 -16.90847 -16.80736 -16.41714 -16.16925 -16.11239 -15.75303 -15.36006 -15.11714 -14.98283 -14.84711 -14.39304 -14.27684 -14.22645 -13.89030 -13.55095 -13.34606 -13.29794 -13.01135 -12.89417 -12.76549 -12.60779 -12.52678 -12.36291 -12.31109 -11.96813 -11.82637 -11.70432 -11.56311 -11.42289 -10.92031 -10.67604 -10.40498 -10.29672 -9.96982 -9.73503 -9.29477 -8.08491 -6.22395 -0.28150 0.20157 0.71230 1.29165 1.38130 1.38986 1.40100 1.50433 2.41424 2.53476 3.12958 3.18606 3.36075 3.60333 3.61748 3.82813 3.96928 3.99708 4.16372 4.21437 4.23916 4.28004 4.34853 4.36825 4.49700 4.51689 4.55317 4.62374 4.70998 4.75819 4.80903 4.82431 4.92899 4.98744 5.01637 5.06941 5.10574 5.16365 5.21414 5.32896 5.37685 5.38012 5.50062 5.58284 5.61983 5.91701 5.94770 6.08444 6.17747 6.27717 6.44128 6.89817 7.37161 7.45206 8.96549 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010623 B = 0.004141 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.247022 B = 6760.794374 C = 8379.834929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.078 4.078 3 C -0.111 4.111 4 C -0.092 4.092 5 C -0.106 4.106 6 C -0.105 4.105 7 C 0.075 3.925 8 N -0.240 5.240 9 C -0.032 4.032 10 C -0.052 4.052 11 C 0.138 3.862 12 N -0.527 5.527 13 C 0.073 3.927 14 C -0.112 4.112 15 C -0.101 4.101 16 C 0.053 3.947 17 H 0.004 0.996 18 C -0.532 4.532 19 H 0.049 0.951 20 C 0.015 3.985 21 N -0.915 5.915 22 Si 0.951 3.049 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.277 1.277 26 C 0.088 3.912 27 N -0.284 5.284 28 N -0.103 5.103 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.090 0.910 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.145 0.855 36 H 0.213 0.787 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.014 0.986 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.007 0.993 44 H 0.059 0.941 45 H 0.260 0.740 46 H 0.068 0.932 47 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.692 9.216 -14.837 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.080 4.080 3 C -0.129 4.129 4 C -0.110 4.110 5 C -0.124 4.124 6 C -0.126 4.126 7 C -0.014 4.014 8 N -0.028 5.028 9 C -0.182 4.182 10 C -0.191 4.191 11 C 0.008 3.992 12 N -0.249 5.249 13 C -0.055 4.055 14 C -0.149 4.149 15 C -0.139 4.139 16 C 0.034 3.966 17 H 0.022 0.978 18 C -0.571 4.571 19 H 0.068 0.932 20 C -0.184 4.184 21 N -0.554 5.554 22 Si 0.777 3.223 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.203 1.203 26 C -0.040 4.040 27 N -0.152 5.152 28 N -0.081 5.081 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.174 0.826 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.163 0.837 36 H 0.230 0.770 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.032 0.968 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.026 0.974 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 13.566 9.138 -15.630 22.623 hybrid contribution 0.230 1.000 1.398 1.735 sum 13.796 10.138 -14.232 22.263 Atomic orbital electron populations 1.20745 0.90937 1.02418 1.02626 1.20041 0.96680 0.92247 0.99004 1.21346 0.95310 0.96739 0.99535 1.21807 0.93603 1.00052 0.95567 1.21479 1.02027 0.90499 0.98430 1.21312 0.90071 1.01512 0.99659 1.17911 0.91835 0.81478 1.10194 1.44694 1.22231 1.12072 1.23795 1.24094 1.05741 0.87552 1.00783 1.23315 0.95986 1.01725 0.98060 1.20891 0.97681 0.88024 0.92594 1.62368 1.02179 1.48839 1.11480 1.21928 0.88821 0.98731 0.96039 1.21607 0.97478 0.99792 0.96066 1.21438 1.00873 0.94889 0.96716 1.18595 0.91347 0.95224 0.91455 0.97812 1.21496 1.12299 1.19029 1.04242 0.93231 1.25698 0.94955 0.97744 0.99995 1.70042 1.17884 1.39660 1.27852 0.85616 0.78164 0.79246 0.79306 1.19133 1.20914 1.20259 1.21937 0.99242 0.90966 0.91838 1.74995 1.23156 1.01633 1.15367 1.78295 1.02496 1.10673 1.16608 0.90292 0.95204 0.89134 0.82568 0.81455 0.81347 0.83711 0.76995 0.88013 0.86565 0.96815 0.89793 0.92002 0.92245 0.97407 0.92237 0.93084 0.91337 0.97844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.82 8.86 71.24 0.63 -2.19 16 2 C -0.08 -1.79 5.89 -19.75 -0.12 -1.91 16 3 C -0.11 -1.72 9.67 22.25 0.22 -1.51 16 4 C -0.09 -1.02 10.04 22.29 0.22 -0.79 16 5 C -0.11 -1.24 10.04 22.25 0.22 -1.01 16 6 C -0.11 -1.84 9.64 22.38 0.22 -1.62 16 7 C 0.08 1.85 6.18 38.07 0.24 2.09 16 8 N -0.24 -7.16 2.97 -187.05 -0.55 -7.72 16 9 C -0.03 -0.92 10.28 83.37 0.86 -0.06 16 10 C -0.05 -1.64 4.82 41.60 0.20 -1.44 16 11 C 0.14 3.98 5.94 85.56 0.51 4.49 16 12 N -0.53 -19.39 4.86 -900.93 -4.38 -23.77 16 13 C 0.07 2.77 5.10 86.32 0.44 3.21 16 14 C -0.11 -4.67 6.09 30.64 0.19 -4.49 16 15 C -0.10 -5.15 5.02 30.67 0.15 -4.99 16 16 C 0.05 2.73 2.26 -11.49 -0.03 2.71 16 17 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 18 C -0.53 -29.90 8.56 25.60 0.22 -29.68 16 19 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 20 C 0.01 0.83 5.30 84.65 0.45 1.28 16 21 N -0.91 -53.92 11.35 21.44 0.24 -53.68 16 22 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.09 3.74 4.06 86.32 0.35 4.09 16 27 N -0.28 -10.26 11.59 -48.59 -0.56 -10.83 16 28 N -0.10 -3.60 11.40 37.02 0.42 -3.17 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.03 0.97 7.17 -2.39 -0.02 0.96 16 31 H 0.09 1.86 8.05 -2.38 -0.02 1.84 16 32 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 35 H 0.15 2.08 8.03 -2.91 -0.02 2.05 16 36 H 0.21 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.10 2.66 8.06 -2.39 -0.02 2.64 16 38 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 39 H 0.01 0.57 6.88 -2.38 -0.02 0.56 16 40 H 0.08 2.80 8.06 -2.39 -0.02 2.78 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.06 3.38 6.15 -2.39 -0.01 3.37 16 45 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 46 H 0.07 2.74 8.12 -2.39 -0.02 2.72 16 47 H 0.00 0.15 6.74 -2.39 -0.02 0.14 16 Total: -1.00 -71.89 375.22 3.12 -68.77 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.95 Total: 16.11 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 4.97 Total: -31.83 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -4.83 Total: -99.16 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.89 3.12 -68.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.428 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds