Wall clock time and date at job start Tue Mar 31 2020 14:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37984 * 120.06820 * 2 1 4 4 C 1.38338 * 120.14055 * 179.97438 * 3 2 1 5 5 C 1.38373 * 120.29318 * 0.02749 * 4 3 2 6 6 C 1.37943 * 120.14353 * 359.74003 * 5 4 3 7 7 C 1.39545 * 120.07500 * 179.97438 * 2 1 3 8 8 C 1.47849 * 120.14674 * 359.97438 * 7 2 1 9 9 N 1.31260 * 126.47018 * 310.93612 * 8 7 2 10 10 N 1.28507 * 109.93650 * 179.97438 * 9 8 7 11 11 C 1.31381 * 110.08088 * 359.97438 * 10 9 8 12 12 N 1.38397 * 126.37423 * 179.97438 * 11 10 9 13 13 C 1.46843 * 111.00295 * 272.13360 * 12 11 10 14 14 C 1.53175 * 109.55697 * 185.83960 * 13 12 11 15 15 C 1.53113 * 109.20793 * 300.85688 * 14 13 12 16 16 C 1.53120 * 109.21606 * 57.62400 * 15 14 13 17 17 H 1.09000 * 109.50013 * 62.28962 * 16 15 14 18 18 C 1.50697 * 109.50792 * 182.37475 * 16 15 14 19 19 H 1.07993 * 119.99942 * 120.00107 * 18 16 15 20 20 C 1.37880 * 119.99857 * 299.99921 * 18 16 15 21 21 N 1.31515 * 119.99708 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 119.99928 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47252 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46650 * 120.00325 * 22 20 18 25 25 H 1.48498 * 109.47379 * 240.00262 * 22 20 18 26 26 C 1.46849 * 110.99742 * 36.34032 * 12 11 10 27 27 N 1.36470 * 107.25334 * 0.22816 * 11 10 9 28 28 C 1.46501 * 127.16330 * 179.74074 * 27 11 10 29 29 H 1.09003 * 109.47078 * 270.01599 * 1 2 3 30 30 H 1.08998 * 109.47704 * 30.01730 * 1 2 3 31 31 H 1.09007 * 109.47332 * 150.02336 * 1 2 3 32 32 H 1.07994 * 119.93036 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.85158 * 180.02562 * 4 3 2 34 34 H 1.07995 * 119.92912 * 179.97438 * 5 4 3 35 35 H 1.07998 * 120.07115 * 180.27809 * 6 5 4 36 36 H 1.08999 * 109.46022 * 305.84953 * 13 12 11 37 37 H 1.08994 * 109.46841 * 65.83221 * 13 12 11 38 38 H 1.09004 * 109.58984 * 180.90668 * 14 13 12 39 39 H 1.08997 * 109.48944 * 60.74714 * 14 13 12 40 40 H 1.09010 * 109.52520 * 297.68751 * 15 14 13 41 41 H 1.08997 * 109.52486 * 177.56591 * 15 14 13 42 42 H 0.97006 * 119.99781 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.46254 * 54.14862 * 26 12 11 44 44 H 1.09003 * 109.45659 * 294.17151 * 26 12 11 45 45 H 1.09009 * 109.46840 * 91.08387 * 28 27 11 46 46 H 1.08994 * 109.47033 * 211.07967 * 28 27 11 47 47 H 1.09000 * 109.47092 * 331.08397 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1942 0.0000 4 6 3.5817 1.1959 0.0005 5 6 4.2812 0.0020 0.0005 6 6 3.6021 -1.1987 0.0053 7 6 2.2063 -1.2076 0.0005 8 6 1.4720 -2.4908 0.0017 9 7 0.4845 -2.8240 0.7997 10 7 0.0802 -4.0123 0.5240 11 6 0.7846 -4.5098 -0.4671 12 7 0.6332 -5.7637 -1.0332 13 6 1.4369 -6.7640 -0.3192 14 6 1.3608 -8.1043 -1.0567 15 6 -0.1006 -8.5548 -1.1334 16 6 -0.9248 -7.4739 -1.8384 17 1 -0.5629 -7.3481 -2.8588 18 6 -2.3745 -7.8844 -1.8657 19 1 -3.1204 -7.2639 -1.3915 20 6 -2.7486 -9.0521 -2.4963 21 7 -1.8402 -9.8079 -3.0734 22 14 -4.5456 -9.5613 -2.5296 23 1 -5.3608 -8.5471 -1.8140 24 1 -5.0056 -9.6615 -3.9380 25 1 -4.6990 -10.8797 -1.8637 26 6 -0.7819 -6.1533 -1.0783 27 7 1.6970 -3.5624 -0.8309 28 6 2.7051 -3.6648 -1.8889 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6583 2.1294 -0.0004 33 1 4.1181 2.1333 0.0010 34 1 5.3611 0.0102 0.0005 35 1 4.1492 -2.1298 0.0098 36 1 2.4743 -6.4323 -0.2754 37 1 1.0512 -6.8846 0.6931 38 1 1.9441 -8.8513 -0.5184 39 1 1.7590 -7.9879 -2.0646 40 1 -0.4877 -8.7089 -0.1260 41 1 -0.1655 -9.4867 -1.6950 42 1 -2.1033 -10.6296 -3.5167 43 1 -1.3560 -5.3783 -1.5858 44 1 -1.1571 -6.2767 -0.0623 45 1 2.2908 -3.2860 -2.8233 46 1 3.5806 -3.0762 -1.6147 47 1 2.9939 -4.7081 -2.0159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597276444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:11 Heat of formation + Delta-G solvation = 105.796958 kcal Electronic energy + Delta-G solvation = -27702.296953 eV Core-core repulsion = 24079.061684 eV Total energy + Delta-G solvation = -3623.235268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.74618 -39.49421 -38.29921 -34.92187 -33.98016 -33.15494 -32.19678 -31.40149 -30.00605 -28.47034 -27.54544 -27.03157 -25.06004 -23.86752 -23.42437 -22.11077 -21.62236 -20.65853 -20.53982 -18.64384 -17.51086 -16.74560 -16.39167 -16.18847 -15.68004 -15.57569 -15.10204 -14.55447 -14.08935 -14.02359 -13.92397 -13.76500 -13.50549 -13.23779 -12.91376 -12.86056 -12.59877 -12.50663 -12.32514 -12.22515 -11.89729 -11.63485 -11.37056 -11.24386 -10.97916 -10.83242 -10.71342 -10.51644 -10.22663 -10.06142 -9.94569 -9.59921 -9.50952 -9.25427 -9.03776 -8.85962 -8.65748 -8.34931 -7.98787 -6.01732 -4.07287 0.75334 1.08238 1.92256 2.35932 2.97240 3.29902 3.38130 3.43281 3.47655 4.03769 4.17028 4.45476 4.55397 4.59311 4.62054 4.73043 5.03000 5.06773 5.14710 5.25154 5.29597 5.35395 5.41868 5.42212 5.55116 5.59070 5.63739 5.69987 5.76786 5.84130 5.96083 6.05627 6.09340 6.16745 6.18919 6.33368 6.36098 6.37577 6.51806 6.59874 6.66464 6.75052 6.85333 7.02536 7.26640 7.36631 7.67873 7.72840 7.97987 8.09015 8.40784 8.89665 8.96319 9.57472 11.04617 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023239 B = 0.002800 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.605927 B = 9998.263251 C =10733.914405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.042 4.042 3 C -0.121 4.121 4 C -0.106 4.106 5 C -0.126 4.126 6 C -0.099 4.099 7 C -0.009 4.009 8 C 0.197 3.803 9 N -0.265 5.265 10 N -0.315 5.315 11 C 0.374 3.626 12 N -0.466 5.466 13 C 0.072 3.928 14 C -0.115 4.115 15 C -0.114 4.114 16 C 0.056 3.944 17 H 0.035 0.965 18 C -0.512 4.512 19 H 0.057 0.943 20 C 0.064 3.936 21 N -0.889 5.889 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.083 3.917 27 N -0.469 5.469 28 C 0.079 3.921 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.096 0.904 42 H 0.260 0.740 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.712 18.089 3.238 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.044 4.044 3 C -0.139 4.139 4 C -0.124 4.124 5 C -0.144 4.144 6 C -0.118 4.118 7 C -0.011 4.011 8 C -0.067 4.067 9 N -0.106 5.106 10 N -0.160 5.160 11 C 0.019 3.981 12 N -0.192 5.192 13 C -0.055 4.055 14 C -0.153 4.153 15 C -0.152 4.152 16 C 0.037 3.963 17 H 0.053 0.947 18 C -0.551 4.551 19 H 0.075 0.925 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.042 4.042 27 N -0.162 5.162 28 C -0.064 4.064 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.847 17.962 3.720 22.983 hybrid contribution -0.123 -0.546 -0.416 0.698 sum 13.724 17.416 3.304 22.418 Atomic orbital electron populations 1.20829 0.90209 1.02638 1.03405 1.19986 0.96680 0.91437 0.96268 1.20992 0.94225 0.97294 1.01361 1.21260 0.94225 0.98188 0.98755 1.20999 0.99988 0.91980 1.01422 1.21179 0.92560 0.98604 0.99475 1.17330 0.91808 0.87733 1.04277 1.22464 0.99656 0.90108 0.94519 1.74401 1.08556 1.07177 1.20481 1.74757 1.24457 1.04259 1.12501 1.22783 0.90191 0.92259 0.92876 1.58909 1.14854 0.96025 1.49416 1.22172 0.95258 0.92112 0.95976 1.21735 1.00681 0.93229 0.99693 1.21714 0.90380 1.03171 0.99961 1.18725 0.95433 0.87418 0.94713 0.94681 1.21127 0.92216 1.06731 1.35049 0.92477 1.24915 0.97362 0.96394 0.95094 1.69889 1.32589 1.13966 1.36372 0.86536 0.85322 0.78491 0.77685 1.19712 1.21058 1.21028 1.22415 0.80921 1.00124 1.00779 1.46274 1.28778 1.12431 1.28688 1.22081 0.90057 1.05067 0.89205 0.89985 0.91652 0.91304 0.85388 0.85707 0.85566 0.85944 0.92497 0.93884 0.92578 0.91831 0.94558 0.88613 0.93058 0.91863 0.93640 0.90026 0.89766 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.19 36.00 0.33 -0.96 16 2 C -0.04 -0.47 5.91 -104.23 -0.62 -1.09 16 3 C -0.12 -1.05 9.69 -39.64 -0.38 -1.43 16 4 C -0.11 -0.79 10.04 -39.49 -0.40 -1.19 16 5 C -0.13 -0.98 10.03 -39.64 -0.40 -1.38 16 6 C -0.10 -0.96 8.62 -39.19 -0.34 -1.30 16 7 C -0.01 -0.11 5.67 -104.97 -0.60 -0.70 16 8 C 0.20 3.04 6.36 -153.78 -0.98 2.06 16 9 N -0.26 -4.88 11.14 32.59 0.36 -4.52 16 10 N -0.31 -6.38 11.68 30.31 0.35 -6.02 16 11 C 0.37 6.89 6.70 -318.91 -2.14 4.75 16 12 N -0.47 -8.82 4.66 -174.48 -0.81 -9.64 16 13 C 0.07 1.24 5.40 -3.76 -0.02 1.22 16 14 C -0.12 -2.10 6.11 -26.58 -0.16 -2.26 16 15 C -0.11 -2.59 5.02 -26.61 -0.13 -2.73 16 16 C 0.06 1.37 2.27 -91.69 -0.21 1.16 16 17 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 18 C -0.51 -13.91 8.56 -34.44 -0.29 -14.20 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -24.77 11.35 55.43 0.63 -24.14 16 22 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C 0.08 1.83 4.31 -3.83 -0.02 1.81 16 27 N -0.47 -7.07 3.23 -122.07 -0.39 -7.47 16 28 C 0.08 0.84 11.03 59.85 0.66 1.50 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.07 0.96 6.73 -51.92 -0.35 0.61 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 34 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.12 1.05 6.99 -52.49 -0.37 0.68 16 36 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.10 2.42 6.15 -51.93 -0.32 2.10 16 42 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.06 1.44 8.10 -51.93 -0.42 1.02 16 44 H 0.05 1.05 8.05 -51.93 -0.42 0.63 16 45 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 46 H 0.08 0.67 5.76 -51.93 -0.30 0.37 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -30.95 376.45 -12.20 -43.15 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.21 Total: -0.10 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -5.78 Total: -13.09 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.14 Total: -51.79 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.95 -12.20 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597276444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.945 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds