Wall clock time and date at job start Tue Mar 31 2020 14:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37984 * 120.06820 * 2 1 4 4 C 1.38338 * 120.14055 * 179.97438 * 3 2 1 5 5 C 1.38373 * 120.29318 * 0.02749 * 4 3 2 6 6 C 1.37943 * 120.14353 * 359.74003 * 5 4 3 7 7 C 1.39545 * 120.07500 * 179.97438 * 2 1 3 8 8 C 1.47849 * 120.14674 * 359.97438 * 7 2 1 9 9 N 1.31260 * 126.47018 * 310.93612 * 8 7 2 10 10 N 1.28507 * 109.93650 * 179.97438 * 9 8 7 11 11 C 1.31381 * 110.08088 * 359.97438 * 10 9 8 12 12 N 1.38397 * 126.37423 * 179.97438 * 11 10 9 13 13 C 1.46843 * 111.00295 * 272.13360 * 12 11 10 14 14 C 1.53175 * 109.55697 * 185.83960 * 13 12 11 15 15 C 1.53113 * 109.20793 * 300.85688 * 14 13 12 16 16 C 1.53120 * 109.21606 * 57.62400 * 15 14 13 17 17 H 1.09000 * 109.50013 * 62.28962 * 16 15 14 18 18 C 1.50697 * 109.50792 * 182.37475 * 16 15 14 19 19 H 1.07993 * 119.99942 * 120.00107 * 18 16 15 20 20 C 1.37880 * 119.99857 * 299.99921 * 18 16 15 21 21 N 1.31515 * 119.99708 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 119.99928 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47252 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46650 * 120.00325 * 22 20 18 25 25 H 1.48498 * 109.47379 * 240.00262 * 22 20 18 26 26 C 1.46849 * 110.99742 * 36.34032 * 12 11 10 27 27 N 1.36470 * 107.25334 * 0.22816 * 11 10 9 28 28 C 1.46501 * 127.16330 * 179.74074 * 27 11 10 29 29 H 1.09003 * 109.47078 * 270.01599 * 1 2 3 30 30 H 1.08998 * 109.47704 * 30.01730 * 1 2 3 31 31 H 1.09007 * 109.47332 * 150.02336 * 1 2 3 32 32 H 1.07994 * 119.93036 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.85158 * 180.02562 * 4 3 2 34 34 H 1.07995 * 119.92912 * 179.97438 * 5 4 3 35 35 H 1.07998 * 120.07115 * 180.27809 * 6 5 4 36 36 H 1.08999 * 109.46022 * 305.84953 * 13 12 11 37 37 H 1.08994 * 109.46841 * 65.83221 * 13 12 11 38 38 H 1.09004 * 109.58984 * 180.90668 * 14 13 12 39 39 H 1.08997 * 109.48944 * 60.74714 * 14 13 12 40 40 H 1.09010 * 109.52520 * 297.68751 * 15 14 13 41 41 H 1.08997 * 109.52486 * 177.56591 * 15 14 13 42 42 H 0.97006 * 119.99781 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.46254 * 54.14862 * 26 12 11 44 44 H 1.09003 * 109.45659 * 294.17151 * 26 12 11 45 45 H 1.09009 * 109.46840 * 91.08387 * 28 27 11 46 46 H 1.08994 * 109.47033 * 211.07967 * 28 27 11 47 47 H 1.09000 * 109.47092 * 331.08397 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1942 0.0000 4 6 3.5817 1.1959 0.0005 5 6 4.2812 0.0020 0.0005 6 6 3.6021 -1.1987 0.0053 7 6 2.2063 -1.2076 0.0005 8 6 1.4720 -2.4908 0.0017 9 7 0.4845 -2.8240 0.7997 10 7 0.0802 -4.0123 0.5240 11 6 0.7846 -4.5098 -0.4671 12 7 0.6332 -5.7637 -1.0332 13 6 1.4369 -6.7640 -0.3192 14 6 1.3608 -8.1043 -1.0567 15 6 -0.1006 -8.5548 -1.1334 16 6 -0.9248 -7.4739 -1.8384 17 1 -0.5629 -7.3481 -2.8588 18 6 -2.3745 -7.8844 -1.8657 19 1 -3.1204 -7.2639 -1.3915 20 6 -2.7486 -9.0521 -2.4963 21 7 -1.8402 -9.8079 -3.0734 22 14 -4.5456 -9.5613 -2.5296 23 1 -5.3608 -8.5471 -1.8140 24 1 -5.0056 -9.6615 -3.9380 25 1 -4.6990 -10.8797 -1.8637 26 6 -0.7819 -6.1533 -1.0783 27 7 1.6970 -3.5624 -0.8309 28 6 2.7051 -3.6648 -1.8889 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6583 2.1294 -0.0004 33 1 4.1181 2.1333 0.0010 34 1 5.3611 0.0102 0.0005 35 1 4.1492 -2.1298 0.0098 36 1 2.4743 -6.4323 -0.2754 37 1 1.0512 -6.8846 0.6931 38 1 1.9441 -8.8513 -0.5184 39 1 1.7590 -7.9879 -2.0646 40 1 -0.4877 -8.7089 -0.1260 41 1 -0.1655 -9.4867 -1.6950 42 1 -2.1033 -10.6296 -3.5167 43 1 -1.3560 -5.3783 -1.5858 44 1 -1.1571 -6.2767 -0.0623 45 1 2.2908 -3.2860 -2.8233 46 1 3.5806 -3.0762 -1.6147 47 1 2.9939 -4.7081 -2.0159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597276444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:10 Heat of formation + Delta-G solvation = 91.026245 kcal Electronic energy + Delta-G solvation = -27702.937459 eV Core-core repulsion = 24079.061684 eV Total energy + Delta-G solvation = -3623.875775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.02838 -40.32239 -39.82266 -36.16012 -35.69101 -34.12437 -33.59308 -32.46632 -31.84307 -29.65781 -28.58638 -27.85777 -27.04530 -25.43513 -24.40161 -23.30752 -22.97526 -22.02335 -21.51887 -20.34904 -18.90933 -18.12259 -17.59700 -17.36402 -17.13022 -16.53925 -16.32823 -16.07590 -15.54615 -15.40059 -14.88290 -14.75096 -14.56727 -14.46099 -14.41494 -14.19469 -14.06695 -13.70853 -13.50625 -13.20210 -13.00049 -12.89183 -12.79930 -12.71728 -12.60642 -12.17175 -12.05111 -11.95736 -11.86151 -11.80056 -11.43944 -11.22121 -11.10406 -10.85575 -10.56064 -10.42542 -9.94456 -9.70662 -9.31972 -8.11634 -6.24487 -0.07271 0.40944 0.73310 1.18678 1.39251 1.41787 1.53170 1.68529 2.40963 2.69625 2.75738 3.16077 3.18317 3.66411 3.83577 3.86452 3.87575 4.04931 4.09665 4.14037 4.26432 4.33535 4.38239 4.40627 4.45610 4.53329 4.55378 4.62114 4.71988 4.73525 4.77218 4.78836 4.84152 4.90464 4.97109 4.99643 5.05526 5.23903 5.25820 5.34926 5.45059 5.51355 5.55213 5.61244 5.64478 5.69859 5.97094 5.99436 6.10333 6.22762 6.36254 6.84053 7.42958 7.57972 8.93454 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023239 B = 0.002800 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.605927 B = 9998.263251 C =10733.914405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.060 4.060 3 C -0.121 4.121 4 C -0.095 4.095 5 C -0.120 4.120 6 C -0.099 4.099 7 C -0.043 4.043 8 C 0.222 3.778 9 N -0.304 5.304 10 N -0.354 5.354 11 C 0.356 3.644 12 N -0.460 5.460 13 C 0.075 3.925 14 C -0.103 4.103 15 C -0.108 4.108 16 C 0.059 3.941 17 H 0.009 0.991 18 C -0.538 4.538 19 H 0.045 0.955 20 C 0.021 3.979 21 N -0.909 5.909 22 Si 0.952 3.048 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.277 1.277 26 C 0.104 3.896 27 N -0.463 5.463 28 C 0.071 3.929 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.034 0.966 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.133 0.867 36 H 0.092 0.908 37 H 0.031 0.969 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.023 0.977 41 H 0.070 0.930 42 H 0.263 0.737 43 H 0.045 0.955 44 H 0.027 0.973 45 H 0.087 0.913 46 H 0.116 0.884 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.688 20.226 3.070 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.113 4.113 5 C -0.138 4.138 6 C -0.119 4.119 7 C -0.046 4.046 8 C -0.044 4.044 9 N -0.144 5.144 10 N -0.199 5.199 11 C -0.001 4.001 12 N -0.185 5.185 13 C -0.052 4.052 14 C -0.141 4.141 15 C -0.146 4.146 16 C 0.040 3.960 17 H 0.027 0.973 18 C -0.577 4.577 19 H 0.063 0.937 20 C -0.178 4.178 21 N -0.548 5.548 22 Si 0.777 3.223 23 H -0.198 1.198 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.023 4.023 27 N -0.155 5.155 28 C -0.070 4.070 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.168 0.832 33 H 0.177 0.823 34 H 0.176 0.824 35 H 0.151 0.849 36 H 0.110 0.890 37 H 0.049 0.951 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.106 0.894 46 H 0.134 0.866 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.847 20.108 3.546 26.471 hybrid contribution -0.951 -1.031 -0.372 1.451 sum 15.896 19.077 3.174 25.034 Atomic orbital electron populations 1.20747 0.91211 1.02007 1.02634 1.20081 0.96288 0.92270 0.97493 1.21275 0.95125 0.97006 1.00482 1.21720 0.93755 0.99626 0.96224 1.21400 1.01590 0.91129 0.99647 1.21346 0.91282 1.00180 0.99073 1.17507 0.93003 0.86398 1.07647 1.23107 0.98014 0.90733 0.92565 1.74313 1.10748 1.06875 1.22515 1.74624 1.25881 1.05439 1.13953 1.22613 0.91578 0.92394 0.93498 1.58840 1.12799 0.96885 1.49984 1.22217 0.96727 0.91368 0.94870 1.21618 0.97525 0.94355 1.00617 1.21519 0.93430 1.01361 0.98279 1.18598 0.94480 0.89180 0.93727 0.97291 1.21419 0.93566 1.07144 1.35546 0.93696 1.25602 1.01215 0.96289 0.94698 1.69993 1.34147 1.14170 1.36540 0.85604 0.80685 0.78107 0.77859 1.19828 1.20326 1.20267 1.21934 0.83107 0.98376 0.98838 1.46455 1.28644 1.11383 1.29065 1.22444 0.90040 1.06243 0.88310 0.90953 0.89351 0.94733 0.83176 0.82325 0.82394 0.84882 0.88995 0.95087 0.89654 0.91437 0.95776 0.91198 0.92799 0.93643 0.95507 0.89395 0.86597 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 9.19 71.23 0.65 -1.87 16 2 C -0.06 -1.26 5.91 -19.61 -0.12 -1.37 16 3 C -0.12 -1.71 9.69 22.23 0.22 -1.49 16 4 C -0.10 -0.98 10.04 22.33 0.22 -0.76 16 5 C -0.12 -1.32 10.03 22.23 0.22 -1.10 16 6 C -0.10 -1.63 8.62 22.53 0.19 -1.44 16 7 C -0.04 -1.00 5.67 -20.09 -0.11 -1.12 16 8 C 0.22 6.88 6.36 136.22 0.87 7.74 16 9 N -0.30 -11.73 11.14 -50.81 -0.57 -12.30 16 10 N -0.35 -15.09 11.68 -58.02 -0.68 -15.77 16 11 C 0.36 13.44 6.70 260.12 1.74 15.18 16 12 N -0.46 -17.79 4.66 -705.92 -3.29 -21.08 16 13 C 0.07 2.55 5.40 86.37 0.47 3.01 16 14 C -0.10 -3.68 6.11 30.69 0.19 -3.49 16 15 C -0.11 -5.04 5.02 30.67 0.15 -4.88 16 16 C 0.06 3.03 2.27 -11.49 -0.03 3.00 16 17 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 18 C -0.54 -30.53 8.56 25.60 0.22 -30.31 16 19 H 0.04 2.58 7.74 -2.91 -0.02 2.56 16 20 C 0.02 1.19 5.30 84.66 0.45 1.64 16 21 N -0.91 -51.76 11.35 21.45 0.24 -51.52 16 22 Si 0.95 44.32 29.54 68.60 2.03 46.34 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 26 C 0.10 4.85 4.31 86.33 0.37 5.22 16 27 N -0.46 -13.84 3.23 -540.10 -1.75 -15.58 16 28 C 0.07 1.37 11.03 127.77 1.41 2.78 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 31 H 0.03 1.01 6.73 -2.38 -0.02 1.00 16 32 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 34 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.13 1.82 6.99 -2.91 -0.02 1.80 16 36 H 0.09 2.53 8.10 -2.39 -0.02 2.52 16 37 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.07 3.64 6.15 -2.39 -0.01 3.63 16 42 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 43 H 0.04 2.22 8.10 -2.39 -0.02 2.20 16 44 H 0.03 1.32 8.05 -2.39 -0.02 1.30 16 45 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.12 1.49 5.76 -2.39 -0.01 1.47 16 47 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -71.99 376.45 4.07 -67.92 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.96 Total: 11.23 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 7.12 Total: -9.24 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -6.04 Total: -116.26 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -71.99 4.07 -67.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597276444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.950 kcal (2) G-P(sol) polarization free energy of solvation -71.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds