Wall clock time and date at job start Tue Mar 31 2020 14:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37981 * 120.07511 * 2 1 4 4 C 1.38331 * 120.14331 * 180.02562 * 3 2 1 5 5 C 1.38378 * 120.29521 * 359.97438 * 4 3 2 6 6 C 1.37948 * 120.13893 * 359.67764 * 5 4 3 7 7 C 1.39551 * 120.07322 * 180.02562 * 2 1 3 8 8 C 1.47855 * 120.14065 * 359.97438 * 7 2 1 9 9 N 1.31259 * 126.47177 * 311.27960 * 8 7 2 10 10 N 1.28514 * 109.93550 * 179.72926 * 9 8 7 11 11 C 1.31375 * 110.07764 * 0.45448 * 10 9 8 12 12 N 1.38401 * 126.36987 * 179.81873 * 11 10 9 13 13 C 1.46832 * 110.98595 * 123.90391 * 12 11 10 14 14 C 1.53037 * 109.51895 * 174.15305 * 13 12 11 15 15 C 1.53127 * 109.27418 * 59.18093 * 14 13 12 16 16 C 1.53113 * 109.16183 * 302.34070 * 15 14 13 17 17 H 1.09004 * 109.50739 * 297.72076 * 16 15 14 18 18 C 1.50700 * 109.53782 * 177.61415 * 16 15 14 19 19 H 1.07998 * 120.00274 * 240.17922 * 18 16 15 20 20 C 1.37884 * 119.99568 * 60.18201 * 18 16 15 21 21 N 1.31511 * 120.00040 * 359.97438 * 20 18 16 22 22 Si 1.86796 * 119.99927 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46982 * 59.99829 * 22 20 18 24 24 H 1.48498 * 109.47087 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47365 * 299.99979 * 22 20 18 26 26 C 1.46851 * 111.00383 * 359.69069 * 12 11 10 27 27 N 1.36470 * 107.25703 * 359.55927 * 11 10 9 28 28 C 1.46501 * 127.16375 * 180.22895 * 27 11 10 29 29 H 1.08993 * 109.47896 * 269.98197 * 1 2 3 30 30 H 1.09006 * 109.47011 * 29.98763 * 1 2 3 31 31 H 1.09004 * 109.46969 * 149.97788 * 1 2 3 32 32 H 1.07998 * 119.92932 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.85138 * 179.97438 * 4 3 2 34 34 H 1.07996 * 119.93529 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.07135 * 180.32118 * 6 5 4 36 36 H 1.09001 * 109.46411 * 54.13860 * 13 12 11 37 37 H 1.08994 * 109.46316 * 294.17159 * 13 12 11 38 38 H 1.08997 * 109.50289 * 299.24410 * 14 13 12 39 39 H 1.08998 * 109.50359 * 179.12198 * 14 13 12 40 40 H 1.09000 * 109.51923 * 182.43943 * 15 14 13 41 41 H 1.08998 * 109.52155 * 62.24946 * 15 14 13 42 42 H 0.96996 * 120.00091 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.45785 * 65.82004 * 26 12 11 44 44 H 1.09005 * 109.45539 * 305.84553 * 26 12 11 45 45 H 1.09000 * 109.47457 * 91.47595 * 28 27 11 46 46 H 1.08994 * 109.47156 * 211.47899 * 28 27 11 47 47 H 1.09002 * 109.47000 * 331.48066 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 -0.0005 5 6 4.2812 0.0017 -0.0005 6 6 3.6020 -1.1989 0.0067 7 6 2.2063 -1.2077 -0.0005 8 6 1.4718 -2.4909 -0.0005 9 7 0.4801 -2.8223 0.7930 10 7 0.0737 -4.0092 0.5142 11 6 0.7876 -4.5113 -0.4677 12 7 0.6393 -5.7665 -1.0317 13 6 0.4215 -5.6695 -2.4806 14 6 0.4077 -7.0730 -3.0906 15 6 -0.7092 -7.8953 -2.4415 16 6 -0.4854 -7.9400 -0.9275 17 1 0.4605 -8.4380 -0.7139 18 6 -1.6120 -8.6980 -0.2737 19 1 -2.2374 -8.2100 0.4591 20 6 -1.8441 -10.0146 -0.6112 21 7 -1.0827 -10.6087 -1.5038 22 14 -3.2409 -10.9540 0.1986 23 1 -4.5290 -10.2759 -0.0950 24 1 -3.2791 -12.3399 -0.3333 25 1 -3.0254 -10.9927 1.6674 26 6 -0.4456 -6.5114 -0.3802 27 7 1.6987 -3.5629 -0.8320 28 6 2.7086 -3.6654 -1.8883 29 1 -0.3634 -0.0003 1.0275 30 1 -0.3633 0.8901 -0.5137 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6585 2.1294 0.0004 33 1 4.1182 2.1330 -0.0010 34 1 5.3612 0.0098 -0.0014 35 1 4.1491 -2.1302 0.0119 36 1 1.2248 -5.0859 -2.9303 37 1 -0.5335 -5.1807 -2.6724 38 1 1.3675 -7.5573 -2.9110 39 1 0.2305 -7.0016 -4.1637 40 1 -0.6949 -8.9089 -2.8420 41 1 -1.6728 -7.4322 -2.6538 42 1 -1.2462 -11.5348 -1.7415 43 1 -1.3967 -6.0186 -0.5819 44 1 -0.2719 -6.5393 0.6956 45 1 2.2975 -3.2830 -2.8226 46 1 3.5853 -3.0802 -1.6108 47 1 2.9945 -4.7093 -2.0175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597276445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:14 Heat of formation + Delta-G solvation = 108.059604 kcal Electronic energy + Delta-G solvation = -27750.576732 eV Core-core repulsion = 24127.439579 eV Total energy + Delta-G solvation = -3623.137153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.73460 -39.48548 -38.40763 -35.01331 -33.97555 -33.15062 -32.18823 -31.46769 -30.02350 -28.45338 -27.66142 -27.03136 -25.11373 -23.85981 -23.43184 -22.16905 -21.56520 -20.73033 -20.37487 -18.77444 -17.51878 -16.74978 -16.39379 -16.20082 -15.60388 -15.56277 -15.15895 -14.57072 -14.29822 -14.21437 -13.86646 -13.76557 -13.42348 -13.32079 -12.98600 -12.88485 -12.62351 -12.55669 -12.32068 -12.20472 -11.93540 -11.58202 -11.37480 -11.21157 -10.95509 -10.86020 -10.74292 -10.33564 -10.28837 -10.05028 -9.98665 -9.93312 -9.53014 -9.27097 -9.07825 -8.88777 -8.74739 -8.33637 -7.75255 -6.01895 -4.07433 0.77521 1.09406 1.97949 2.37037 3.03207 3.33577 3.37335 3.41337 3.49423 3.99291 4.19034 4.45024 4.53721 4.58224 4.61241 4.73751 4.94608 5.03787 5.12150 5.12848 5.27190 5.28793 5.35345 5.42463 5.45868 5.55505 5.62433 5.68639 5.72028 5.77167 5.90460 6.06286 6.09116 6.14736 6.18139 6.29641 6.34954 6.36670 6.43978 6.56638 6.64375 6.76449 6.85096 6.97707 7.20881 7.32632 7.60680 7.71096 7.95840 8.06960 8.39415 8.95403 8.98601 9.57258 11.04654 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.002724 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.295270 B =10276.092256 C =10811.444704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.044 4.044 3 C -0.121 4.121 4 C -0.107 4.107 5 C -0.126 4.126 6 C -0.099 4.099 7 C -0.006 4.006 8 C 0.190 3.810 9 N -0.259 5.259 10 N -0.324 5.324 11 C 0.385 3.615 12 N -0.451 5.451 13 C 0.058 3.942 14 C -0.116 4.116 15 C -0.115 4.115 16 C 0.055 3.945 17 H 0.036 0.964 18 C -0.514 4.514 19 H 0.057 0.943 20 C 0.064 3.936 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.083 3.917 27 N -0.484 5.484 28 C 0.074 3.926 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.035 0.965 42 H 0.261 0.739 43 H 0.042 0.958 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.189 21.261 -3.818 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.046 4.046 3 C -0.139 4.139 4 C -0.125 4.125 5 C -0.144 4.144 6 C -0.119 4.119 7 C -0.009 4.009 8 C -0.075 4.075 9 N -0.099 5.099 10 N -0.170 5.170 11 C 0.029 3.971 12 N -0.174 5.174 13 C -0.068 4.068 14 C -0.154 4.154 15 C -0.153 4.153 16 C 0.036 3.964 17 H 0.054 0.946 18 C -0.552 4.552 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.042 4.042 27 N -0.180 5.180 28 C -0.069 4.069 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.564 20.821 -2.791 23.514 hybrid contribution -0.187 -0.395 -0.729 0.850 sum 10.376 20.426 -3.520 23.179 Atomic orbital electron populations 1.20816 0.90280 1.02461 1.03411 1.19981 0.96633 0.91462 0.96486 1.20980 0.94224 0.97272 1.01430 1.21250 0.94222 0.98168 0.98901 1.21006 0.99985 0.91991 1.01387 1.21201 0.92638 0.98610 0.99439 1.17327 0.91776 0.87758 1.03992 1.22364 1.00562 0.89961 0.94638 1.74358 1.08718 1.06855 1.19942 1.74771 1.22253 1.03480 1.16451 1.23078 0.89223 0.88663 0.96096 1.58801 1.47260 1.06291 1.05064 1.22342 0.99714 1.00004 0.84759 1.21720 1.02071 0.93427 0.98208 1.21735 0.94084 1.00983 0.98493 1.18746 0.98032 0.87965 0.91682 0.94552 1.21044 1.14667 0.96211 1.23307 0.92445 1.24912 0.96335 0.97428 0.95051 1.69861 1.38729 1.12261 1.32038 0.86635 0.82641 0.78761 0.79857 1.20265 1.21341 1.20175 1.22444 0.87886 0.95366 0.98483 1.46086 1.28950 1.13185 1.29797 1.22171 0.90572 1.05148 0.89026 0.89986 0.91766 0.91388 0.85453 0.85751 0.85590 0.85897 0.91801 0.94046 0.91640 0.92472 0.88513 0.94594 0.92929 0.93983 0.90478 0.90451 0.89386 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.18 36.01 0.33 -0.92 16 2 C -0.04 -0.49 5.91 -104.23 -0.62 -1.10 16 3 C -0.12 -1.05 9.69 -39.64 -0.38 -1.43 16 4 C -0.11 -0.81 10.04 -39.50 -0.40 -1.21 16 5 C -0.13 -1.00 10.03 -39.64 -0.40 -1.40 16 6 C -0.10 -0.99 8.63 -39.19 -0.34 -1.33 16 7 C -0.01 -0.07 5.67 -104.97 -0.60 -0.67 16 8 C 0.19 2.93 6.37 -153.78 -0.98 1.95 16 9 N -0.26 -4.83 11.11 32.59 0.36 -4.47 16 10 N -0.32 -6.65 11.22 30.31 0.34 -6.31 16 11 C 0.38 7.10 7.21 -318.91 -2.30 4.81 16 12 N -0.45 -8.52 4.69 -174.57 -0.82 -9.34 16 13 C 0.06 0.96 5.25 -3.84 -0.02 0.94 16 14 C -0.12 -2.05 6.09 -26.65 -0.16 -2.21 16 15 C -0.11 -2.57 5.03 -26.61 -0.13 -2.70 16 16 C 0.05 1.34 2.26 -91.69 -0.21 1.13 16 17 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.51 -13.93 8.56 -34.44 -0.29 -14.23 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 21 N -0.89 -24.76 11.36 55.43 0.63 -24.13 16 22 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.08 1.83 4.10 -3.83 -0.02 1.82 16 27 N -0.48 -7.22 3.23 -122.07 -0.39 -7.61 16 28 C 0.07 0.75 9.26 59.85 0.55 1.30 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.07 0.91 6.72 -51.93 -0.35 0.56 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.12 1.11 6.98 -52.48 -0.37 0.74 16 36 H 0.06 0.85 5.19 -51.93 -0.27 0.58 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 2.42 6.16 -51.93 -0.32 2.10 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.08 1.79 7.92 -51.93 -0.41 1.38 16 45 H 0.08 0.67 7.81 -51.93 -0.41 0.26 16 46 H 0.09 0.70 5.76 -51.93 -0.30 0.40 16 47 H 0.10 0.99 7.55 -51.93 -0.39 0.60 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -31.08 370.47 -12.37 -43.46 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.00 Total: 0.24 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -6.05 Total: -13.59 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.12 Total: -51.87 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.08 -12.37 -43.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597276445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.515 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds