Wall clock time and date at job start Tue Mar 31 2020 14:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37981 * 120.07511 * 2 1 4 4 C 1.38331 * 120.14331 * 180.02562 * 3 2 1 5 5 C 1.38378 * 120.29521 * 359.97438 * 4 3 2 6 6 C 1.37948 * 120.13893 * 359.67764 * 5 4 3 7 7 C 1.39551 * 120.07322 * 180.02562 * 2 1 3 8 8 C 1.47855 * 120.14065 * 359.97438 * 7 2 1 9 9 N 1.31259 * 126.47177 * 311.27960 * 8 7 2 10 10 N 1.28514 * 109.93550 * 179.72926 * 9 8 7 11 11 C 1.31375 * 110.07764 * 0.45448 * 10 9 8 12 12 N 1.38401 * 126.36987 * 179.81873 * 11 10 9 13 13 C 1.46832 * 110.98595 * 123.90391 * 12 11 10 14 14 C 1.53037 * 109.51895 * 174.15305 * 13 12 11 15 15 C 1.53127 * 109.27418 * 59.18093 * 14 13 12 16 16 C 1.53113 * 109.16183 * 302.34070 * 15 14 13 17 17 H 1.09004 * 109.50739 * 297.72076 * 16 15 14 18 18 C 1.50700 * 109.53782 * 177.61415 * 16 15 14 19 19 H 1.07998 * 120.00274 * 240.17922 * 18 16 15 20 20 C 1.37884 * 119.99568 * 60.18201 * 18 16 15 21 21 N 1.31511 * 120.00040 * 359.97438 * 20 18 16 22 22 Si 1.86796 * 119.99927 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46982 * 59.99829 * 22 20 18 24 24 H 1.48498 * 109.47087 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47365 * 299.99979 * 22 20 18 26 26 C 1.46851 * 111.00383 * 359.69069 * 12 11 10 27 27 N 1.36470 * 107.25703 * 359.55927 * 11 10 9 28 28 C 1.46501 * 127.16375 * 180.22895 * 27 11 10 29 29 H 1.08993 * 109.47896 * 269.98197 * 1 2 3 30 30 H 1.09006 * 109.47011 * 29.98763 * 1 2 3 31 31 H 1.09004 * 109.46969 * 149.97788 * 1 2 3 32 32 H 1.07998 * 119.92932 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.85138 * 179.97438 * 4 3 2 34 34 H 1.07996 * 119.93529 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.07135 * 180.32118 * 6 5 4 36 36 H 1.09001 * 109.46411 * 54.13860 * 13 12 11 37 37 H 1.08994 * 109.46316 * 294.17159 * 13 12 11 38 38 H 1.08997 * 109.50289 * 299.24410 * 14 13 12 39 39 H 1.08998 * 109.50359 * 179.12198 * 14 13 12 40 40 H 1.09000 * 109.51923 * 182.43943 * 15 14 13 41 41 H 1.08998 * 109.52155 * 62.24946 * 15 14 13 42 42 H 0.96996 * 120.00091 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.45785 * 65.82004 * 26 12 11 44 44 H 1.09005 * 109.45539 * 305.84553 * 26 12 11 45 45 H 1.09000 * 109.47457 * 91.47595 * 28 27 11 46 46 H 1.08994 * 109.47156 * 211.47899 * 28 27 11 47 47 H 1.09002 * 109.47000 * 331.48066 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 -0.0005 5 6 4.2812 0.0017 -0.0005 6 6 3.6020 -1.1989 0.0067 7 6 2.2063 -1.2077 -0.0005 8 6 1.4718 -2.4909 -0.0005 9 7 0.4801 -2.8223 0.7930 10 7 0.0737 -4.0092 0.5142 11 6 0.7876 -4.5113 -0.4677 12 7 0.6393 -5.7665 -1.0317 13 6 0.4215 -5.6695 -2.4806 14 6 0.4077 -7.0730 -3.0906 15 6 -0.7092 -7.8953 -2.4415 16 6 -0.4854 -7.9400 -0.9275 17 1 0.4605 -8.4380 -0.7139 18 6 -1.6120 -8.6980 -0.2737 19 1 -2.2374 -8.2100 0.4591 20 6 -1.8441 -10.0146 -0.6112 21 7 -1.0827 -10.6087 -1.5038 22 14 -3.2409 -10.9540 0.1986 23 1 -4.5290 -10.2759 -0.0950 24 1 -3.2791 -12.3399 -0.3333 25 1 -3.0254 -10.9927 1.6674 26 6 -0.4456 -6.5114 -0.3802 27 7 1.6987 -3.5629 -0.8320 28 6 2.7086 -3.6654 -1.8883 29 1 -0.3634 -0.0003 1.0275 30 1 -0.3633 0.8901 -0.5137 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6585 2.1294 0.0004 33 1 4.1182 2.1330 -0.0010 34 1 5.3612 0.0098 -0.0014 35 1 4.1491 -2.1302 0.0119 36 1 1.2248 -5.0859 -2.9303 37 1 -0.5335 -5.1807 -2.6724 38 1 1.3675 -7.5573 -2.9110 39 1 0.2305 -7.0016 -4.1637 40 1 -0.6949 -8.9089 -2.8420 41 1 -1.6728 -7.4322 -2.6538 42 1 -1.2462 -11.5348 -1.7415 43 1 -1.3967 -6.0186 -0.5819 44 1 -0.2719 -6.5393 0.6956 45 1 2.2975 -3.2830 -2.8226 46 1 3.5853 -3.0802 -1.6108 47 1 2.9945 -4.7093 -2.0175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597276445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:13 Heat of formation + Delta-G solvation = 93.017158 kcal Electronic energy + Delta-G solvation = -27751.229021 eV Core-core repulsion = 24127.439579 eV Total energy + Delta-G solvation = -3623.789442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.01526 -40.34143 -39.86964 -36.29322 -35.62712 -34.12696 -33.60446 -32.48785 -31.82777 -29.64451 -28.68111 -27.84919 -27.06513 -25.40423 -24.46773 -23.33391 -22.81459 -22.06979 -21.39798 -20.47529 -18.90564 -18.11626 -17.55307 -17.45355 -17.01121 -16.56507 -16.34443 -16.06617 -15.65259 -15.53853 -14.81045 -14.72879 -14.70399 -14.47230 -14.31031 -14.20771 -14.12307 -13.78658 -13.43580 -13.18283 -12.98249 -12.87925 -12.79645 -12.67728 -12.58294 -12.19917 -12.04479 -11.95653 -11.85382 -11.70695 -11.41409 -11.27026 -11.12973 -11.05164 -10.72623 -10.40972 -9.91231 -9.66700 -9.11778 -8.11694 -6.24523 -0.04833 0.41559 0.79138 1.21869 1.41782 1.42615 1.50577 1.73542 2.40996 2.65860 2.76487 3.16131 3.22208 3.58034 3.81906 3.86687 3.88799 3.99261 4.02073 4.14269 4.21929 4.30716 4.37409 4.39431 4.42274 4.50011 4.53729 4.62299 4.71862 4.74089 4.75022 4.79885 4.83150 4.90745 4.95180 4.99883 5.04145 5.24612 5.25580 5.33999 5.44754 5.52659 5.56167 5.60720 5.65108 5.68074 5.95919 6.00183 6.09502 6.19004 6.35299 6.83508 7.42775 7.66376 8.93271 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.002724 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.295270 B =10276.092256 C =10811.444704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.059 4.059 3 C -0.121 4.121 4 C -0.096 4.096 5 C -0.120 4.120 6 C -0.101 4.101 7 C -0.040 4.040 8 C 0.216 3.784 9 N -0.302 5.302 10 N -0.368 5.368 11 C 0.368 3.632 12 N -0.451 5.451 13 C 0.061 3.939 14 C -0.105 4.105 15 C -0.108 4.108 16 C 0.057 3.943 17 H 0.006 0.994 18 C -0.540 4.540 19 H 0.046 0.954 20 C 0.022 3.978 21 N -0.910 5.910 22 Si 0.952 3.048 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.275 1.275 26 C 0.106 3.894 27 N -0.477 5.477 28 C 0.062 3.938 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.036 0.964 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.026 0.974 42 H 0.263 0.737 43 H 0.026 0.974 44 H 0.053 0.947 45 H 0.099 0.901 46 H 0.114 0.886 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.598 24.082 -5.190 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.061 4.061 3 C -0.138 4.138 4 C -0.114 4.114 5 C -0.138 4.138 6 C -0.121 4.121 7 C -0.042 4.042 8 C -0.051 4.051 9 N -0.141 5.141 10 N -0.213 5.213 11 C 0.010 3.990 12 N -0.174 5.174 13 C -0.065 4.065 14 C -0.143 4.143 15 C -0.146 4.146 16 C 0.038 3.962 17 H 0.025 0.975 18 C -0.579 4.579 19 H 0.064 0.936 20 C -0.178 4.178 21 N -0.549 5.549 22 Si 0.777 3.223 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.201 1.201 26 C -0.021 4.021 27 N -0.172 5.172 28 C -0.079 4.079 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.148 0.852 36 H 0.123 0.877 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.118 0.882 46 H 0.132 0.868 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.994 23.659 -4.178 27.314 hybrid contribution -0.814 -1.087 -0.290 1.389 sum 12.179 22.571 -4.468 26.034 Atomic orbital electron populations 1.20740 0.91083 1.02091 1.02581 1.20086 0.96357 0.92170 0.97486 1.21275 0.95059 0.97055 1.00447 1.21706 0.93820 0.99523 0.96344 1.21387 1.01524 0.91170 0.99725 1.21337 0.91469 1.00048 0.99249 1.17491 0.92856 0.86491 1.07387 1.23018 0.98762 0.90686 0.92628 1.74268 1.11117 1.06538 1.22167 1.74632 1.24150 1.04731 1.17802 1.22887 0.90470 0.89085 0.96514 1.58733 1.45739 1.06830 1.06140 1.22440 1.01027 0.99700 0.83360 1.21611 0.99875 0.93109 0.99719 1.21528 0.95678 1.00381 0.97060 1.18623 0.95566 0.88688 0.93323 0.97544 1.21366 1.15609 0.97187 1.23702 0.93566 1.25604 0.98509 0.98119 0.95552 1.69974 1.39762 1.12475 1.32653 0.85711 0.79928 0.77755 0.78869 1.19821 1.20388 1.20056 1.21915 0.88391 0.94491 0.97277 1.46292 1.28747 1.11880 1.30239 1.22591 0.90482 1.06213 0.88620 0.91164 0.89279 0.94489 0.83116 0.82364 0.82571 0.85235 0.87678 0.94729 0.91546 0.89176 0.91189 0.95554 0.92774 0.95548 0.92830 0.88221 0.86759 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.40 9.18 71.24 0.65 -1.75 16 2 C -0.06 -1.22 5.91 -19.61 -0.12 -1.34 16 3 C -0.12 -1.66 9.69 22.23 0.22 -1.45 16 4 C -0.10 -0.99 10.04 22.33 0.22 -0.76 16 5 C -0.12 -1.38 10.03 22.23 0.22 -1.15 16 6 C -0.10 -1.73 8.63 22.52 0.19 -1.53 16 7 C -0.04 -0.93 5.67 -20.09 -0.11 -1.04 16 8 C 0.22 6.70 6.37 136.22 0.87 7.57 16 9 N -0.30 -11.84 11.11 -50.80 -0.56 -12.41 16 10 N -0.37 -16.00 11.22 -58.02 -0.65 -16.65 16 11 C 0.37 13.95 7.21 260.13 1.88 15.82 16 12 N -0.45 -17.48 4.69 -706.21 -3.32 -20.80 16 13 C 0.06 1.94 5.25 86.33 0.45 2.39 16 14 C -0.11 -3.62 6.09 30.65 0.19 -3.43 16 15 C -0.11 -4.99 5.03 30.67 0.15 -4.83 16 16 C 0.06 2.93 2.26 -11.49 -0.03 2.91 16 17 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 18 C -0.54 -30.75 8.56 25.60 0.22 -30.53 16 19 H 0.05 2.66 7.74 -2.91 -0.02 2.63 16 20 C 0.02 1.21 5.31 84.66 0.45 1.66 16 21 N -0.91 -51.92 11.36 21.45 0.24 -51.68 16 22 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 C 0.11 4.95 4.10 86.33 0.35 5.31 16 27 N -0.48 -13.94 3.23 -540.11 -1.74 -15.68 16 28 C 0.06 1.09 9.26 127.77 1.18 2.27 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 1.43 8.09 -2.38 -0.02 1.41 16 31 H 0.04 1.03 6.72 -2.38 -0.02 1.02 16 32 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 34 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.13 1.96 6.98 -2.91 -0.02 1.94 16 36 H 0.11 2.50 5.19 -2.39 -0.01 2.49 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.07 3.61 6.16 -2.39 -0.01 3.59 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 43 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 2.70 7.92 -2.38 -0.02 2.68 16 45 H 0.10 1.36 7.81 -2.39 -0.02 1.34 16 46 H 0.11 1.43 5.76 -2.39 -0.01 1.42 16 47 H 0.10 1.78 7.55 -2.39 -0.02 1.76 16 Total: -1.00 -73.32 370.47 3.96 -69.36 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.97 Total: 11.26 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 7.00 Total: -9.88 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -6.03 Total: -117.21 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -73.32 3.96 -69.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597276445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.380 kcal (2) G-P(sol) polarization free energy of solvation -73.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds