Wall clock time and date at job start Tue Mar 31 2020 15:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30292 * 126.34442 * 2 1 4 4 N 1.28527 * 110.04831 * 179.73694 * 3 2 1 5 5 C 1.31214 * 109.86613 * 0.02562 * 4 3 2 6 6 N 1.38577 * 126.47789 * 179.97438 * 5 4 3 7 7 C 1.46843 * 111.00380 * 272.02780 * 6 5 4 8 8 C 1.53040 * 109.52761 * 185.83555 * 7 6 5 9 9 C 1.53115 * 109.28100 * 300.82415 * 8 7 6 10 10 C 1.53122 * 109.16081 * 57.65031 * 9 8 7 11 11 H 1.08999 * 109.50358 * 62.28573 * 10 9 8 12 12 C 1.50701 * 109.50341 * 182.40741 * 10 9 8 13 13 H 1.08001 * 119.99921 * 119.80093 * 12 10 9 14 14 C 1.37875 * 120.00096 * 299.80460 * 12 10 9 15 15 N 1.31522 * 119.99847 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00275 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47134 * 89.99995 * 16 14 12 18 18 H 1.48497 * 109.47148 * 209.99687 * 16 14 12 19 19 H 1.48499 * 109.47097 * 329.99992 * 16 14 12 20 20 C 1.46857 * 111.00122 * 36.23812 * 6 5 4 21 21 N 1.36456 * 107.05074 * 359.97438 * 5 4 3 22 22 C 1.46498 * 127.13540 * 180.02562 * 21 5 4 23 23 C 1.50702 * 109.47208 * 84.71135 * 22 21 5 24 24 C 1.38234 * 119.99654 * 272.49060 * 23 22 21 25 25 C 1.38239 * 119.99824 * 179.74211 * 24 23 22 26 26 C 1.38227 * 119.99600 * 0.53413 * 25 24 23 27 27 C 1.38235 * 120.00483 * 359.74236 * 26 25 24 28 28 C 1.38227 * 119.99927 * 92.76687 * 23 22 21 29 29 H 1.09000 * 109.47379 * 90.02006 * 1 2 3 30 30 H 1.09001 * 109.47562 * 210.02012 * 1 2 3 31 31 H 1.08997 * 109.47095 * 330.01974 * 1 2 3 32 32 H 1.09000 * 109.46248 * 305.85703 * 7 6 5 33 33 H 1.09003 * 109.45874 * 65.82242 * 7 6 5 34 34 H 1.08997 * 109.50556 * 180.87371 * 8 7 6 35 35 H 1.09006 * 109.53211 * 60.78400 * 8 7 6 36 36 H 1.09002 * 109.52209 * 297.75212 * 9 8 7 37 37 H 1.08997 * 109.57691 * 177.58631 * 9 8 7 38 38 H 0.96998 * 119.99873 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.45788 * 294.17914 * 20 6 5 40 40 H 1.09003 * 109.45801 * 54.15743 * 20 6 5 41 41 H 1.09001 * 109.46934 * 204.70859 * 22 21 5 42 42 H 1.09002 * 109.47161 * 324.70338 * 22 21 5 43 43 H 1.08004 * 119.99940 * 359.97438 * 24 23 22 44 44 H 1.08002 * 119.99502 * 180.29404 * 25 24 23 45 45 H 1.08003 * 119.99579 * 179.76947 * 26 25 24 46 46 H 1.07998 * 120.00217 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.00809 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5128 0.6888 0.0055 5 6 3.5945 -0.6208 0.0089 6 7 4.7579 -1.3736 0.0145 7 6 5.2308 -1.6220 -1.3533 8 6 6.4289 -2.5735 -1.3155 9 6 7.5454 -1.9474 -0.4754 10 6 7.0127 -1.6542 0.9299 11 1 6.7197 -2.5878 1.4102 12 6 8.0878 -0.9835 1.7457 13 1 7.9216 0.0038 2.1506 14 6 9.2836 -1.6304 1.9751 15 7 9.4862 -2.8326 1.4816 16 14 10.6165 -0.7989 2.9857 17 1 10.4396 -1.1451 4.4189 18 1 11.9495 -1.2638 2.5251 19 1 10.5201 0.6733 2.8166 20 6 5.7978 -0.7293 0.8270 21 7 2.3174 -1.1014 0.0057 22 6 1.9009 -2.5059 0.0080 23 6 1.8787 -3.0209 1.4242 24 6 3.0261 -3.5493 1.9855 25 6 3.0071 -4.0168 3.2863 26 6 1.8379 -3.9660 4.0219 27 6 0.6890 -3.4429 3.4586 28 6 0.7095 -2.9701 2.1597 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8898 0.5141 31 1 -0.3633 0.8901 0.5135 32 1 4.4286 -2.0712 -1.9389 33 1 5.5301 -0.6791 -1.8109 34 1 6.7892 -2.7454 -2.3297 35 1 6.1272 -3.5220 -0.8710 36 1 7.8745 -1.0185 -0.9412 37 1 8.3849 -2.6395 -0.4097 38 1 10.3273 -3.2878 1.6433 39 1 6.0945 0.2094 0.3592 40 1 5.4075 -0.5303 1.8251 41 1 0.9041 -2.5900 -0.4248 42 1 2.6039 -3.0943 -0.5817 43 1 3.9384 -3.5934 1.4090 44 1 3.9048 -4.4252 3.7264 45 1 1.8222 -4.3347 5.0369 46 1 -0.2243 -3.4028 4.0335 47 1 -0.1880 -2.5610 1.7199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597293818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:18 Heat of formation + Delta-G solvation = 104.950483 kcal Electronic energy + Delta-G solvation = -28535.970162 eV Core-core repulsion = 24912.698188 eV Total energy + Delta-G solvation = -3623.271974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.75106 -39.27772 -38.31863 -35.25417 -33.97388 -32.29209 -31.52196 -30.96961 -30.70490 -29.96384 -27.04217 -26.59099 -25.03058 -23.80439 -22.64848 -21.99223 -21.54678 -20.85845 -20.33092 -18.60573 -17.42359 -16.91689 -16.39105 -15.94338 -15.61693 -15.20801 -15.10632 -14.61852 -14.22840 -14.01179 -13.75324 -13.43968 -13.39818 -13.05509 -12.88260 -12.81071 -12.63145 -12.57230 -12.43794 -12.37890 -11.85885 -11.48815 -11.25656 -11.02371 -10.96825 -10.81337 -10.71886 -10.31152 -10.23070 -9.97233 -9.92710 -9.57166 -9.24554 -9.02778 -8.95445 -8.90903 -8.70935 -8.35028 -7.99395 -6.01319 -4.06564 1.12219 1.38234 1.95469 2.52288 3.09845 3.31109 3.37867 3.42616 3.74448 4.15239 4.41081 4.44902 4.47937 4.52594 4.76185 4.92679 5.04614 5.11527 5.20244 5.28894 5.29506 5.33191 5.45458 5.52737 5.53834 5.63557 5.75028 5.85708 5.88960 5.91625 5.99982 6.05955 6.24095 6.36143 6.38151 6.41025 6.51560 6.53459 6.55990 6.67005 6.79991 6.88922 6.95262 7.04987 7.28789 7.38836 7.71781 7.75147 7.98451 8.09335 8.41861 8.96437 9.02962 9.58134 11.04942 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.004240 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.944335 B = 6601.929067 C = 7691.308719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.163 3.837 3 N -0.290 5.290 4 N -0.318 5.318 5 C 0.371 3.629 6 N -0.463 5.463 7 C 0.071 3.929 8 C -0.115 4.115 9 C -0.114 4.114 10 C 0.059 3.941 11 H 0.034 0.966 12 C -0.513 4.513 13 H 0.056 0.944 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.084 3.916 21 N -0.468 5.468 22 C 0.158 3.842 23 C -0.118 4.118 24 C -0.077 4.077 25 C -0.118 4.118 26 C -0.111 4.111 27 C -0.130 4.130 28 C -0.105 4.105 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.095 0.905 38 H 0.260 0.740 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.139 0.861 44 H 0.127 0.873 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.231 -4.905 -2.560 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 N -0.131 5.131 4 N -0.161 5.161 5 C 0.015 3.985 6 N -0.189 5.189 7 C -0.056 4.056 8 C -0.153 4.153 9 C -0.152 4.152 10 C 0.040 3.960 11 H 0.052 0.948 12 C -0.551 4.551 13 H 0.074 0.926 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.042 4.042 21 N -0.162 5.162 22 C 0.035 3.965 23 C -0.119 4.119 24 C -0.096 4.096 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.148 4.148 28 C -0.124 4.124 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.156 0.844 44 H 0.145 0.855 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.754 -4.047 -2.386 19.334 hybrid contribution 0.572 -0.275 0.352 0.726 sum -18.182 -4.322 -2.034 18.799 Atomic orbital electron populations 1.20154 0.84234 1.04133 1.03486 1.24675 0.96387 0.82724 1.06679 1.73971 0.96733 1.24171 1.18207 1.74686 1.11587 1.08359 1.21478 1.22782 0.85630 0.88712 1.01407 1.58972 1.01864 1.44163 1.13909 1.22145 0.97617 0.99561 0.86300 1.21704 0.95309 0.98303 0.99975 1.21708 0.97718 1.00021 0.95730 1.18696 0.89540 0.94598 0.93209 0.94766 1.21090 0.99301 1.02615 1.32129 0.92622 1.24891 0.98195 0.94822 0.95705 1.69877 1.25066 1.12811 1.45050 0.86615 0.81196 0.79929 0.80420 1.20727 1.21258 1.19871 1.22386 0.90198 0.97064 0.94540 1.46388 1.06236 1.07678 1.55937 1.20627 1.02325 0.78514 0.95010 1.19844 0.94666 1.01705 0.95695 1.21360 0.97880 0.94842 0.95476 1.21291 0.98247 0.99622 0.94463 1.21240 0.93062 0.98846 0.99757 1.21058 0.98438 0.99979 0.95286 1.20981 0.97189 0.99516 0.94669 0.90039 0.90847 0.88911 0.92549 0.93999 0.92686 0.91905 0.94613 0.88690 0.93042 0.93842 0.92012 0.88439 0.87722 0.84361 0.85463 0.86107 0.86161 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.05 36.01 0.36 -0.17 16 2 C 0.16 2.36 8.07 -154.02 -1.24 1.11 16 3 N -0.29 -5.41 12.18 32.99 0.40 -5.01 16 4 N -0.32 -6.55 11.69 30.31 0.35 -6.20 16 5 C 0.37 6.77 6.71 -318.88 -2.14 4.63 16 6 N -0.46 -8.54 4.66 -174.54 -0.81 -9.35 16 7 C 0.07 1.21 5.40 -3.83 -0.02 1.19 16 8 C -0.11 -2.05 6.09 -26.65 -0.16 -2.21 16 9 C -0.11 -2.55 5.03 -26.61 -0.13 -2.68 16 10 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 11 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.51 -13.83 8.56 -34.44 -0.29 -14.12 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.07 1.76 5.31 -17.82 -0.09 1.67 16 15 N -0.89 -24.50 11.36 55.43 0.63 -23.87 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 20 C 0.08 1.83 4.31 -3.83 -0.02 1.82 16 21 N -0.47 -6.83 2.79 -115.37 -0.32 -7.16 16 22 C 0.16 1.73 6.08 -5.19 -0.03 1.70 16 23 C -0.12 -1.41 5.46 -104.63 -0.57 -1.98 16 24 C -0.08 -1.06 9.71 -39.58 -0.38 -1.44 16 25 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 26 C -0.11 -1.23 10.05 -39.59 -0.40 -1.63 16 27 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 28 C -0.10 -1.09 9.69 -39.59 -0.38 -1.47 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.49 6.52 -51.93 -0.34 0.15 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 38 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.04 1.02 8.06 -51.93 -0.42 0.60 16 40 H 0.06 1.43 8.10 -51.93 -0.42 1.01 16 41 H 0.10 0.75 7.54 -51.93 -0.39 0.36 16 42 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 43 H 0.14 2.10 8.04 -52.48 -0.42 1.68 16 44 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 47 H 0.12 0.91 6.81 -52.49 -0.36 0.55 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -31.33 381.07 -12.82 -44.15 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -7.28 Total: 1.61 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -6.51 Total: -16.04 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.25 Total: -51.59 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.33 -12.82 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597293818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.099 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds