Wall clock time and date at job start Tue Mar 31 2020 15:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30292 * 126.34442 * 2 1 4 4 N 1.28527 * 110.04831 * 179.73694 * 3 2 1 5 5 C 1.31214 * 109.86613 * 0.02562 * 4 3 2 6 6 N 1.38577 * 126.47789 * 179.97438 * 5 4 3 7 7 C 1.46843 * 111.00380 * 272.02780 * 6 5 4 8 8 C 1.53040 * 109.52761 * 185.83555 * 7 6 5 9 9 C 1.53115 * 109.28100 * 300.82415 * 8 7 6 10 10 C 1.53122 * 109.16081 * 57.65031 * 9 8 7 11 11 H 1.08999 * 109.50358 * 62.28573 * 10 9 8 12 12 C 1.50701 * 109.50341 * 182.40741 * 10 9 8 13 13 H 1.08001 * 119.99921 * 119.80093 * 12 10 9 14 14 C 1.37875 * 120.00096 * 299.80460 * 12 10 9 15 15 N 1.31522 * 119.99847 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00275 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47134 * 89.99995 * 16 14 12 18 18 H 1.48497 * 109.47148 * 209.99687 * 16 14 12 19 19 H 1.48499 * 109.47097 * 329.99992 * 16 14 12 20 20 C 1.46857 * 111.00122 * 36.23812 * 6 5 4 21 21 N 1.36456 * 107.05074 * 359.97438 * 5 4 3 22 22 C 1.46498 * 127.13540 * 180.02562 * 21 5 4 23 23 C 1.50702 * 109.47208 * 84.71135 * 22 21 5 24 24 C 1.38234 * 119.99654 * 272.49060 * 23 22 21 25 25 C 1.38239 * 119.99824 * 179.74211 * 24 23 22 26 26 C 1.38227 * 119.99600 * 0.53413 * 25 24 23 27 27 C 1.38235 * 120.00483 * 359.74236 * 26 25 24 28 28 C 1.38227 * 119.99927 * 92.76687 * 23 22 21 29 29 H 1.09000 * 109.47379 * 90.02006 * 1 2 3 30 30 H 1.09001 * 109.47562 * 210.02012 * 1 2 3 31 31 H 1.08997 * 109.47095 * 330.01974 * 1 2 3 32 32 H 1.09000 * 109.46248 * 305.85703 * 7 6 5 33 33 H 1.09003 * 109.45874 * 65.82242 * 7 6 5 34 34 H 1.08997 * 109.50556 * 180.87371 * 8 7 6 35 35 H 1.09006 * 109.53211 * 60.78400 * 8 7 6 36 36 H 1.09002 * 109.52209 * 297.75212 * 9 8 7 37 37 H 1.08997 * 109.57691 * 177.58631 * 9 8 7 38 38 H 0.96998 * 119.99873 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.45788 * 294.17914 * 20 6 5 40 40 H 1.09003 * 109.45801 * 54.15743 * 20 6 5 41 41 H 1.09001 * 109.46934 * 204.70859 * 22 21 5 42 42 H 1.09002 * 109.47161 * 324.70338 * 22 21 5 43 43 H 1.08004 * 119.99940 * 359.97438 * 24 23 22 44 44 H 1.08002 * 119.99502 * 180.29404 * 25 24 23 45 45 H 1.08003 * 119.99579 * 179.76947 * 26 25 24 46 46 H 1.07998 * 120.00217 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.00809 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5128 0.6888 0.0055 5 6 3.5945 -0.6208 0.0089 6 7 4.7579 -1.3736 0.0145 7 6 5.2308 -1.6220 -1.3533 8 6 6.4289 -2.5735 -1.3155 9 6 7.5454 -1.9474 -0.4754 10 6 7.0127 -1.6542 0.9299 11 1 6.7197 -2.5878 1.4102 12 6 8.0878 -0.9835 1.7457 13 1 7.9216 0.0038 2.1506 14 6 9.2836 -1.6304 1.9751 15 7 9.4862 -2.8326 1.4816 16 14 10.6165 -0.7989 2.9857 17 1 10.4396 -1.1451 4.4189 18 1 11.9495 -1.2638 2.5251 19 1 10.5201 0.6733 2.8166 20 6 5.7978 -0.7293 0.8270 21 7 2.3174 -1.1014 0.0057 22 6 1.9009 -2.5059 0.0080 23 6 1.8787 -3.0209 1.4242 24 6 3.0261 -3.5493 1.9855 25 6 3.0071 -4.0168 3.2863 26 6 1.8379 -3.9660 4.0219 27 6 0.6890 -3.4429 3.4586 28 6 0.7095 -2.9701 2.1597 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8898 0.5141 31 1 -0.3633 0.8901 0.5135 32 1 4.4286 -2.0712 -1.9389 33 1 5.5301 -0.6791 -1.8109 34 1 6.7892 -2.7454 -2.3297 35 1 6.1272 -3.5220 -0.8710 36 1 7.8745 -1.0185 -0.9412 37 1 8.3849 -2.6395 -0.4097 38 1 10.3273 -3.2878 1.6433 39 1 6.0945 0.2094 0.3592 40 1 5.4075 -0.5303 1.8251 41 1 0.9041 -2.5900 -0.4248 42 1 2.6039 -3.0943 -0.5817 43 1 3.9384 -3.5934 1.4090 44 1 3.9048 -4.4252 3.7264 45 1 1.8222 -4.3347 5.0369 46 1 -0.2243 -3.4028 4.0335 47 1 -0.1880 -2.5610 1.7199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597293818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:17 Heat of formation + Delta-G solvation = 90.247732 kcal Electronic energy + Delta-G solvation = -28536.607721 eV Core-core repulsion = 24912.698188 eV Total energy + Delta-G solvation = -3623.909534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.00623 -40.15205 -39.93535 -36.34581 -35.76174 -33.88708 -32.57869 -31.99665 -31.81495 -31.67081 -28.19913 -27.53480 -27.02522 -25.38961 -23.54651 -23.38124 -22.86170 -22.18523 -21.44741 -20.33379 -18.85729 -18.12052 -17.81827 -17.21703 -16.96286 -16.52173 -16.12260 -16.06309 -15.67691 -15.33202 -15.18009 -14.55800 -14.46256 -14.34792 -14.29227 -14.23372 -13.68855 -13.63790 -13.51092 -13.35056 -13.22166 -12.89618 -12.72797 -12.63094 -12.59934 -12.33147 -11.96682 -11.87463 -11.83824 -11.65968 -11.38681 -11.10614 -11.08048 -10.80212 -10.42022 -10.26406 -9.83272 -9.79773 -9.47356 -8.11438 -6.24037 0.21647 0.49921 0.75991 1.37599 1.39306 1.41383 1.51096 1.80045 2.40950 2.70354 2.97020 3.16304 3.50557 3.61491 3.67152 3.87772 3.98963 4.07049 4.12834 4.14089 4.26078 4.33275 4.38685 4.42088 4.49130 4.56504 4.59733 4.67054 4.73658 4.77858 4.82138 4.93606 4.97465 5.00082 5.03417 5.05659 5.09983 5.17607 5.27465 5.44195 5.51698 5.60736 5.62107 5.64984 5.68507 5.76634 5.98193 6.08625 6.10839 6.33053 6.37113 6.83941 7.43222 7.74012 8.93300 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.004240 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.944335 B = 6601.929067 C = 7691.308719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.187 3.813 3 N -0.338 5.338 4 N -0.363 5.363 5 C 0.353 3.647 6 N -0.453 5.453 7 C 0.074 3.926 8 C -0.103 4.103 9 C -0.106 4.106 10 C 0.063 3.937 11 H 0.009 0.991 12 C -0.539 4.539 13 H 0.042 0.958 14 C 0.025 3.975 15 N -0.908 5.908 16 Si 0.948 3.052 17 H -0.276 1.276 18 H -0.278 1.278 19 H -0.275 1.275 20 C 0.108 3.892 21 N -0.460 5.460 22 C 0.152 3.848 23 C -0.126 4.126 24 C -0.103 4.103 25 C -0.144 4.144 26 C -0.116 4.116 27 C -0.129 4.129 28 C -0.100 4.100 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.028 0.972 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.069 0.931 38 H 0.262 0.738 39 H 0.021 0.979 40 H 0.039 0.961 41 H 0.145 0.855 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.139 0.861 46 H 0.152 0.848 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.799 -5.597 -3.114 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 N -0.178 5.178 4 N -0.206 5.206 5 C -0.005 4.005 6 N -0.179 5.179 7 C -0.052 4.052 8 C -0.141 4.141 9 C -0.144 4.144 10 C 0.044 3.956 11 H 0.027 0.973 12 C -0.578 4.578 13 H 0.060 0.940 14 C -0.175 4.175 15 N -0.547 5.547 16 Si 0.774 3.226 17 H -0.201 1.201 18 H -0.203 1.203 19 H -0.200 1.200 20 C -0.019 4.019 21 N -0.154 5.154 22 C 0.032 3.968 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.162 4.162 26 C -0.134 4.134 27 C -0.147 4.147 28 C -0.118 4.118 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.163 0.837 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.157 0.843 46 H 0.170 0.830 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.341 -4.755 -2.949 23.031 hybrid contribution 1.572 -0.086 0.571 1.675 sum -20.769 -4.842 -2.378 21.458 Atomic orbital electron populations 1.20525 0.79655 1.06024 1.05863 1.25809 0.98403 0.81487 1.02441 1.73882 0.96496 1.26269 1.21172 1.74558 1.13359 1.09932 1.22790 1.22646 0.86595 0.88486 1.02812 1.58874 1.01293 1.43425 1.14267 1.22177 0.98352 0.98871 0.85835 1.21581 0.93925 0.98047 1.00530 1.21504 0.98531 0.98971 0.95442 1.18546 0.89834 0.93422 0.93752 0.97323 1.21383 1.00766 1.02439 1.33201 0.93983 1.25554 0.99944 0.95408 0.96594 1.69984 1.25570 1.13591 1.45518 0.85707 0.78900 0.78820 0.79147 1.20149 1.20313 1.19972 1.21856 0.90466 0.95661 0.93924 1.46563 1.04637 1.09215 1.54947 1.21008 1.04774 0.76244 0.94799 1.19964 0.94622 1.01677 0.96402 1.21292 0.98035 0.96895 0.95914 1.21368 0.99078 1.00925 0.94831 1.21515 0.92762 0.98636 1.00507 1.21494 0.99009 0.98540 0.95622 1.21413 0.97632 0.98297 0.94490 0.87256 0.87674 0.88244 0.89018 0.95327 0.89843 0.91547 0.95948 0.91294 0.92830 0.96027 0.94284 0.83698 0.87800 0.87089 0.86570 0.84305 0.82983 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.05 71.24 0.72 -0.05 16 2 C 0.19 4.92 8.07 137.64 1.11 6.03 16 3 N -0.34 -12.47 12.18 -49.54 -0.60 -13.07 16 4 N -0.36 -15.35 11.69 -58.01 -0.68 -16.03 16 5 C 0.35 12.96 6.71 260.11 1.75 14.70 16 6 N -0.45 -17.26 4.66 -706.13 -3.29 -20.54 16 7 C 0.07 2.53 5.40 86.33 0.47 2.99 16 8 C -0.10 -3.67 6.09 30.65 0.19 -3.49 16 9 C -0.11 -4.98 5.03 30.67 0.15 -4.82 16 10 C 0.06 3.25 2.26 -11.49 -0.03 3.22 16 11 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 12 C -0.54 -30.72 8.56 25.60 0.22 -30.50 16 13 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 14 C 0.02 1.38 5.31 84.65 0.45 1.82 16 15 N -0.91 -51.60 11.36 21.45 0.24 -51.35 16 16 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 20 C 0.11 5.06 4.31 86.32 0.37 5.43 16 21 N -0.46 -12.50 2.79 -518.91 -1.45 -13.95 16 22 C 0.15 2.86 6.08 85.63 0.52 3.38 16 23 C -0.13 -2.74 5.46 -19.87 -0.11 -2.84 16 24 C -0.10 -2.88 9.71 22.27 0.22 -2.67 16 25 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16 26 C -0.12 -2.43 10.05 22.27 0.22 -2.20 16 27 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 28 C -0.10 -1.65 9.69 22.27 0.22 -1.43 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.67 6.52 -2.39 -0.02 0.65 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 2.51 8.10 -2.39 -0.02 2.49 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 3.60 6.16 -2.39 -0.01 3.58 16 38 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 39 H 0.02 1.08 8.06 -2.39 -0.02 1.06 16 40 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 41 H 0.15 1.36 7.54 -2.39 -0.02 1.34 16 42 H 0.10 2.00 8.10 -2.39 -0.02 1.98 16 43 H 0.11 3.64 8.04 -2.91 -0.02 3.61 16 44 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 45 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 46 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 47 H 0.16 1.34 6.81 -2.91 -0.02 1.32 16 Total: -1.00 -74.35 381.07 4.11 -70.24 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.95 Total: 14.24 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 6.91 Total: -16.00 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -5.77 Total: -114.95 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -74.35 4.11 -70.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597293818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.485 kcal (2) G-P(sol) polarization free energy of solvation -74.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds