Wall clock time and date at job start Tue Mar 31 2020 15:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30300 * 126.34013 * 2 1 4 4 N 1.28534 * 110.05130 * 180.02562 * 3 2 1 5 5 C 1.31218 * 109.85420 * 359.74712 * 4 3 2 6 6 N 1.38585 * 126.47141 * 180.25775 * 5 4 3 7 7 C 1.46849 * 111.00006 * 242.46657 * 6 5 4 8 8 C 1.53040 * 109.52374 * 174.15775 * 7 6 5 9 9 C 1.53127 * 109.27720 * 59.17693 * 8 7 6 10 10 C 1.53117 * 109.15792 * 302.34726 * 9 8 7 11 11 H 1.09001 * 109.50614 * 297.70660 * 10 9 8 12 12 C 1.50703 * 109.49887 * 177.63458 * 10 9 8 13 13 H 1.08004 * 119.99967 * 239.99989 * 12 10 9 14 14 C 1.37876 * 120.00042 * 59.99642 * 12 10 9 15 15 N 1.31515 * 120.00327 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00044 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46762 * 90.00436 * 16 14 12 18 18 H 1.48499 * 109.46938 * 210.00156 * 16 14 12 19 19 H 1.48496 * 109.47406 * 330.00479 * 16 14 12 20 20 C 1.46844 * 111.00215 * 118.25228 * 6 5 4 21 21 N 1.36448 * 107.05881 * 0.40291 * 5 4 3 22 22 C 1.46499 * 127.13671 * 179.88016 * 21 5 4 23 23 C 1.50702 * 109.47689 * 96.63457 * 22 21 5 24 24 C 1.38232 * 119.99847 * 70.39147 * 23 22 21 25 25 C 1.38238 * 119.99765 * 180.02562 * 24 23 22 26 26 C 1.38237 * 120.00119 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99588 * 0.02802 * 26 25 24 28 28 C 1.38230 * 119.99876 * 250.42308 * 23 22 21 29 29 H 1.09001 * 109.46620 * 269.94925 * 1 2 3 30 30 H 1.08996 * 109.47613 * 29.95230 * 1 2 3 31 31 H 1.08998 * 109.46635 * 149.96162 * 1 2 3 32 32 H 1.08998 * 109.46332 * 294.17218 * 7 6 5 33 33 H 1.09003 * 109.46425 * 54.15502 * 7 6 5 34 34 H 1.08993 * 109.50196 * 179.11957 * 8 7 6 35 35 H 1.09004 * 109.50034 * 299.23739 * 8 7 6 36 36 H 1.09003 * 109.51803 * 62.25425 * 9 8 7 37 37 H 1.09000 * 109.51705 * 182.44065 * 9 8 7 38 38 H 0.96996 * 120.00335 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.46132 * 305.85763 * 20 6 5 40 40 H 1.09005 * 109.46180 * 65.82726 * 20 6 5 41 41 H 1.09001 * 109.47298 * 336.63016 * 22 21 5 42 42 H 1.09000 * 109.46766 * 216.63184 * 22 21 5 43 43 H 1.07993 * 120.00396 * 0.02562 * 24 23 22 44 44 H 1.07998 * 119.99864 * 179.69840 * 25 24 23 45 45 H 1.07998 * 120.00085 * 179.97438 * 26 25 24 46 46 H 1.08009 * 119.99530 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00192 * 359.97234 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5129 0.6891 -0.0005 5 6 3.5945 -0.6206 0.0045 6 7 4.7580 -1.3734 0.0107 7 6 4.8591 -2.1959 -1.2017 8 6 6.2177 -2.8997 -1.2304 9 6 6.3594 -3.7765 0.0170 10 6 6.2020 -2.9036 1.2651 11 1 6.9974 -2.1588 1.2910 12 6 6.2822 -3.7682 2.4969 13 1 5.4489 -3.8096 3.1827 14 6 7.4193 -4.5063 2.7483 15 7 8.4342 -4.4556 1.9134 16 14 7.5189 -5.5774 4.2755 17 1 7.0068 -6.9356 3.9617 18 1 8.9319 -5.6722 4.7222 19 1 6.6972 -4.9761 5.3564 20 6 4.8439 -2.1997 1.2216 21 7 2.3175 -1.1012 -0.0007 22 6 1.9012 -2.5058 -0.0004 23 6 1.5944 -2.9387 1.4101 24 6 0.4725 -2.4513 2.0541 25 6 0.1914 -2.8480 3.3481 26 6 1.0318 -3.7324 3.9980 27 6 2.1537 -4.2197 3.3539 28 6 2.4352 -3.8226 2.0601 29 1 -0.3632 -0.0009 1.0277 30 1 -0.3634 0.8903 -0.5131 31 1 -0.3632 -0.8896 -0.5144 32 1 4.0639 -2.9413 -1.2022 33 1 4.7612 -1.5597 -2.0814 34 1 6.2862 -3.5223 -2.1225 35 1 7.0133 -2.1547 -1.2439 36 1 5.5874 -4.5460 0.0108 37 1 7.3430 -4.2460 0.0223 38 1 9.2342 -4.9746 2.0904 39 1 4.7347 -1.5663 2.1018 40 1 4.0486 -2.9451 1.2097 41 1 2.7042 -3.1229 -0.4033 42 1 1.0101 -2.6207 -0.6176 43 1 -0.1844 -1.7607 1.5463 44 1 -0.6825 -2.4634 3.8530 45 1 0.8124 -4.0420 5.0091 46 1 2.8106 -4.9104 3.8618 47 1 3.3117 -4.2033 1.5570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597293820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:21 Heat of formation + Delta-G solvation = 120.773743 kcal Electronic energy + Delta-G solvation = -29284.282814 eV Core-core repulsion = 25661.696988 eV Total energy + Delta-G solvation = -3622.585826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.83122 -39.46322 -38.42919 -35.25056 -34.00908 -32.35745 -31.61497 -30.97029 -30.79790 -29.99749 -27.35467 -26.59087 -25.13200 -23.69556 -22.83644 -21.98407 -21.64856 -20.84331 -20.41946 -18.94554 -17.29320 -17.15946 -16.43116 -15.98437 -15.63595 -15.29278 -15.13302 -14.62880 -14.44226 -14.27899 -13.66510 -13.55472 -13.30593 -13.26473 -12.97063 -12.73373 -12.61932 -12.53659 -12.51862 -12.31358 -11.94736 -11.46834 -11.27442 -11.04907 -10.98692 -10.88134 -10.82607 -10.29209 -10.22102 -10.03860 -9.95756 -9.67043 -9.33816 -8.97276 -8.94171 -8.87149 -8.62611 -8.45175 -8.14826 -6.08322 -4.15314 1.12619 1.37687 1.93350 2.59694 3.10927 3.22210 3.31126 3.32492 3.73191 3.84746 4.33644 4.36273 4.43771 4.48027 4.84104 4.86961 4.88261 5.01496 5.12524 5.22260 5.27580 5.33283 5.42689 5.46143 5.50971 5.58967 5.72502 5.78761 5.85568 5.87713 5.96539 6.05682 6.15670 6.22849 6.30859 6.37949 6.46703 6.48336 6.51144 6.55474 6.68919 6.81744 6.93446 6.95791 7.19852 7.31459 7.63164 7.67149 7.92648 8.02038 8.31200 8.87719 9.07338 9.49721 10.97865 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011677 B = 0.005454 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.334709 B = 5132.176119 C = 6858.604997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.166 3.834 3 N -0.293 5.293 4 N -0.275 5.275 5 C 0.365 3.635 6 N -0.444 5.444 7 C 0.061 3.939 8 C -0.118 4.118 9 C -0.113 4.113 10 C 0.057 3.943 11 H 0.039 0.961 12 C -0.515 4.515 13 H 0.055 0.945 14 C 0.067 3.933 15 N -0.885 5.885 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.050 3.950 21 N -0.494 5.494 22 C 0.139 3.861 23 C -0.123 4.123 24 C -0.108 4.108 25 C -0.127 4.127 26 C -0.110 4.110 27 C -0.111 4.111 28 C -0.089 4.089 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.097 0.903 38 H 0.261 0.739 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.129 0.871 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.265 -0.783 -3.535 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 N -0.134 5.134 4 N -0.116 5.116 5 C 0.010 3.990 6 N -0.168 5.168 7 C -0.066 4.066 8 C -0.156 4.156 9 C -0.151 4.151 10 C 0.038 3.962 11 H 0.057 0.943 12 C -0.554 4.554 13 H 0.073 0.927 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.075 4.075 21 N -0.191 5.191 22 C 0.016 3.984 23 C -0.124 4.124 24 C -0.127 4.127 25 C -0.145 4.145 26 C -0.128 4.128 27 C -0.129 4.129 28 C -0.107 4.107 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.147 0.853 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.204 0.930 -3.584 16.622 hybrid contribution -0.794 -2.476 0.950 2.768 sum -16.998 -1.546 -2.634 17.270 Atomic orbital electron populations 1.20260 0.84606 1.04051 1.03519 1.24587 0.96347 0.83333 1.05877 1.74121 0.96541 1.23974 1.18797 1.74504 1.10882 1.06752 1.19467 1.23553 0.81289 0.91857 1.02294 1.59268 1.24518 1.27703 1.05349 1.22306 0.99195 0.94451 0.90611 1.21723 0.94844 0.99158 0.99840 1.21723 1.03590 0.97104 0.92651 1.18698 0.89929 0.93857 0.93736 0.94322 1.21009 1.01143 1.26333 1.06890 0.92703 1.24894 0.95557 0.96701 0.96333 1.69867 1.05193 1.41173 1.36072 0.86662 0.77467 0.80743 0.83558 1.20707 1.21154 1.19921 1.23083 1.02356 0.94188 0.87862 1.47682 1.08254 1.07516 1.55688 1.20981 1.02882 0.79260 0.95251 1.19849 0.96840 1.00046 0.95635 1.21117 0.96820 0.99302 0.95424 1.21073 1.00004 0.98547 0.94869 1.21255 0.94786 0.97012 0.99757 1.21261 0.96935 0.99925 0.94826 1.21455 0.97759 0.96093 0.95392 0.89818 0.88871 0.90764 0.95032 0.91409 0.92557 0.91260 0.95025 0.88451 0.92880 0.91867 0.93046 0.87420 0.88126 0.85972 0.86077 0.86014 0.85260 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 8.75 36.01 0.32 -0.27 16 2 C 0.17 2.44 7.88 -154.02 -1.21 1.23 16 3 N -0.29 -5.45 12.18 32.99 0.40 -5.05 16 4 N -0.28 -5.73 12.23 30.31 0.37 -5.36 16 5 C 0.36 6.87 6.63 -318.87 -2.11 4.75 16 6 N -0.44 -8.58 4.70 -174.55 -0.82 -9.40 16 7 C 0.06 1.03 5.19 -3.83 -0.02 1.01 16 8 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 9 C -0.11 -2.40 5.02 -26.61 -0.13 -2.54 16 10 C 0.06 1.33 2.26 -91.69 -0.21 1.12 16 11 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 12 C -0.52 -12.99 8.57 -34.44 -0.29 -13.29 16 13 H 0.05 1.36 7.75 -52.48 -0.41 0.95 16 14 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.88 -23.89 11.35 55.43 0.63 -23.26 16 16 Si 0.89 20.11 29.54 -169.99 -5.02 15.08 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.05 1.02 4.40 -3.84 -0.02 1.01 16 21 N -0.49 -7.47 2.79 -115.37 -0.32 -7.79 16 22 C 0.14 1.69 5.26 -5.19 -0.03 1.66 16 23 C -0.12 -1.58 5.30 -104.63 -0.55 -2.13 16 24 C -0.11 -1.23 9.51 -39.58 -0.38 -1.61 16 25 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 26 C -0.11 -1.30 10.05 -39.58 -0.40 -1.69 16 27 C -0.11 -1.52 10.05 -39.58 -0.40 -1.92 16 28 C -0.09 -1.28 8.01 -39.59 -0.32 -1.59 16 29 H 0.08 0.67 6.86 -51.93 -0.36 0.31 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.50 7.37 -51.93 -0.38 0.12 16 32 H 0.03 0.48 5.25 -51.93 -0.27 0.20 16 33 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 2.37 6.15 -51.93 -0.32 2.05 16 38 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.06 1.43 8.10 -51.93 -0.42 1.01 16 40 H 0.05 0.94 1.65 -51.93 -0.09 0.86 16 41 H 0.11 1.36 4.28 -51.93 -0.22 1.14 16 42 H 0.10 0.90 7.48 -51.93 -0.39 0.51 16 43 H 0.12 1.12 4.84 -52.49 -0.25 0.87 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 47 H 0.14 2.24 6.09 -52.49 -0.32 1.92 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -30.49 359.52 -12.12 -42.61 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.37 Total: 4.44 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -6.41 Total: -16.69 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.26 Total: -50.87 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.49 -12.12 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597293820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.387 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds