Wall clock time and date at job start Tue Mar 31 2020 15:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30300 * 126.34013 * 2 1 4 4 N 1.28534 * 110.05130 * 180.02562 * 3 2 1 5 5 C 1.31218 * 109.85420 * 359.74712 * 4 3 2 6 6 N 1.38585 * 126.47141 * 180.25775 * 5 4 3 7 7 C 1.46849 * 111.00006 * 242.46657 * 6 5 4 8 8 C 1.53040 * 109.52374 * 174.15775 * 7 6 5 9 9 C 1.53127 * 109.27720 * 59.17693 * 8 7 6 10 10 C 1.53117 * 109.15792 * 302.34726 * 9 8 7 11 11 H 1.09001 * 109.50614 * 297.70660 * 10 9 8 12 12 C 1.50703 * 109.49887 * 177.63458 * 10 9 8 13 13 H 1.08004 * 119.99967 * 239.99989 * 12 10 9 14 14 C 1.37876 * 120.00042 * 59.99642 * 12 10 9 15 15 N 1.31515 * 120.00327 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00044 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46762 * 90.00436 * 16 14 12 18 18 H 1.48499 * 109.46938 * 210.00156 * 16 14 12 19 19 H 1.48496 * 109.47406 * 330.00479 * 16 14 12 20 20 C 1.46844 * 111.00215 * 118.25228 * 6 5 4 21 21 N 1.36448 * 107.05881 * 0.40291 * 5 4 3 22 22 C 1.46499 * 127.13671 * 179.88016 * 21 5 4 23 23 C 1.50702 * 109.47689 * 96.63457 * 22 21 5 24 24 C 1.38232 * 119.99847 * 70.39147 * 23 22 21 25 25 C 1.38238 * 119.99765 * 180.02562 * 24 23 22 26 26 C 1.38237 * 120.00119 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99588 * 0.02802 * 26 25 24 28 28 C 1.38230 * 119.99876 * 250.42308 * 23 22 21 29 29 H 1.09001 * 109.46620 * 269.94925 * 1 2 3 30 30 H 1.08996 * 109.47613 * 29.95230 * 1 2 3 31 31 H 1.08998 * 109.46635 * 149.96162 * 1 2 3 32 32 H 1.08998 * 109.46332 * 294.17218 * 7 6 5 33 33 H 1.09003 * 109.46425 * 54.15502 * 7 6 5 34 34 H 1.08993 * 109.50196 * 179.11957 * 8 7 6 35 35 H 1.09004 * 109.50034 * 299.23739 * 8 7 6 36 36 H 1.09003 * 109.51803 * 62.25425 * 9 8 7 37 37 H 1.09000 * 109.51705 * 182.44065 * 9 8 7 38 38 H 0.96996 * 120.00335 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.46132 * 305.85763 * 20 6 5 40 40 H 1.09005 * 109.46180 * 65.82726 * 20 6 5 41 41 H 1.09001 * 109.47298 * 336.63016 * 22 21 5 42 42 H 1.09000 * 109.46766 * 216.63184 * 22 21 5 43 43 H 1.07993 * 120.00396 * 0.02562 * 24 23 22 44 44 H 1.07998 * 119.99864 * 179.69840 * 25 24 23 45 45 H 1.07998 * 120.00085 * 179.97438 * 26 25 24 46 46 H 1.08009 * 119.99530 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00192 * 359.97234 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5129 0.6891 -0.0005 5 6 3.5945 -0.6206 0.0045 6 7 4.7580 -1.3734 0.0107 7 6 4.8591 -2.1959 -1.2017 8 6 6.2177 -2.8997 -1.2304 9 6 6.3594 -3.7765 0.0170 10 6 6.2020 -2.9036 1.2651 11 1 6.9974 -2.1588 1.2910 12 6 6.2822 -3.7682 2.4969 13 1 5.4489 -3.8096 3.1827 14 6 7.4193 -4.5063 2.7483 15 7 8.4342 -4.4556 1.9134 16 14 7.5189 -5.5774 4.2755 17 1 7.0068 -6.9356 3.9617 18 1 8.9319 -5.6722 4.7222 19 1 6.6972 -4.9761 5.3564 20 6 4.8439 -2.1997 1.2216 21 7 2.3175 -1.1012 -0.0007 22 6 1.9012 -2.5058 -0.0004 23 6 1.5944 -2.9387 1.4101 24 6 0.4725 -2.4513 2.0541 25 6 0.1914 -2.8480 3.3481 26 6 1.0318 -3.7324 3.9980 27 6 2.1537 -4.2197 3.3539 28 6 2.4352 -3.8226 2.0601 29 1 -0.3632 -0.0009 1.0277 30 1 -0.3634 0.8903 -0.5131 31 1 -0.3632 -0.8896 -0.5144 32 1 4.0639 -2.9413 -1.2022 33 1 4.7612 -1.5597 -2.0814 34 1 6.2862 -3.5223 -2.1225 35 1 7.0133 -2.1547 -1.2439 36 1 5.5874 -4.5460 0.0108 37 1 7.3430 -4.2460 0.0223 38 1 9.2342 -4.9746 2.0904 39 1 4.7347 -1.5663 2.1018 40 1 4.0486 -2.9451 1.2097 41 1 2.7042 -3.1229 -0.4033 42 1 1.0101 -2.6207 -0.6176 43 1 -0.1844 -1.7607 1.5463 44 1 -0.6825 -2.4634 3.8530 45 1 0.8124 -4.0420 5.0091 46 1 2.8106 -4.9104 3.8618 47 1 3.3117 -4.2033 1.5570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597293820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:21 Heat of formation + Delta-G solvation = 105.942386 kcal Electronic energy + Delta-G solvation = -29284.925950 eV Core-core repulsion = 25661.696988 eV Total energy + Delta-G solvation = -3623.228962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.10195 -40.55237 -39.83001 -36.45369 -35.67870 -33.89286 -32.71908 -32.11455 -31.95288 -31.55688 -28.52547 -27.59959 -27.01300 -25.21984 -23.85080 -23.34897 -22.98390 -22.11278 -21.56237 -20.56286 -18.79780 -18.29438 -17.79318 -17.30008 -17.11018 -16.51639 -16.23311 -16.11410 -15.74476 -15.52351 -15.11830 -14.66245 -14.50988 -14.44534 -14.32378 -14.12934 -13.77838 -13.67460 -13.51530 -13.38434 -13.29533 -12.84862 -12.71473 -12.64811 -12.60908 -12.37685 -11.96208 -11.94101 -11.77617 -11.59613 -11.38976 -11.13103 -11.07439 -10.78656 -10.41579 -9.97024 -9.94134 -9.84698 -9.57613 -8.09057 -6.22605 0.16449 0.42873 0.71383 1.39689 1.42586 1.46733 1.50977 1.79389 2.35137 2.50821 2.81105 3.19301 3.35594 3.49909 3.54314 3.82975 3.91764 3.97563 4.04330 4.10216 4.15706 4.21311 4.26397 4.39387 4.49683 4.52399 4.59205 4.66741 4.67458 4.73494 4.74984 4.85604 4.93268 4.95353 4.97661 5.01123 5.07844 5.12909 5.27070 5.42917 5.46100 5.50991 5.58242 5.61949 5.62859 5.76331 5.98163 6.01830 6.13276 6.30751 6.35241 6.87076 7.45333 7.76820 8.96097 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011677 B = 0.005454 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.334709 B = 5132.176119 C = 6858.604997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.190 3.810 3 N -0.335 5.335 4 N -0.319 5.319 5 C 0.350 3.650 6 N -0.465 5.465 7 C 0.066 3.934 8 C -0.110 4.110 9 C -0.102 4.102 10 C 0.057 3.943 11 H -0.011 1.011 12 C -0.526 4.526 13 H 0.054 0.946 14 C 0.021 3.979 15 N -0.913 5.913 16 Si 0.947 3.053 17 H -0.270 1.270 18 H -0.288 1.288 19 H -0.271 1.271 20 C 0.071 3.929 21 N -0.488 5.488 22 C 0.135 3.865 23 C -0.130 4.130 24 C -0.107 4.107 25 C -0.124 4.124 26 C -0.113 4.113 27 C -0.134 4.134 28 C -0.112 4.112 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.260 0.740 39 H 0.029 0.971 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.146 0.854 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.143 0.857 46 H 0.120 0.880 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.352 -1.456 -3.857 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.079 4.079 3 N -0.175 5.175 4 N -0.160 5.160 5 C -0.007 4.007 6 N -0.190 5.190 7 C -0.060 4.060 8 C -0.148 4.148 9 C -0.141 4.141 10 C 0.038 3.962 11 H 0.007 0.993 12 C -0.564 4.564 13 H 0.072 0.928 14 C -0.178 4.178 15 N -0.552 5.552 16 Si 0.773 3.227 17 H -0.195 1.195 18 H -0.214 1.214 19 H -0.196 1.196 20 C -0.054 4.054 21 N -0.185 5.185 22 C 0.014 3.986 23 C -0.131 4.131 24 C -0.125 4.125 25 C -0.142 4.142 26 C -0.131 4.131 27 C -0.152 4.152 28 C -0.130 4.130 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.163 0.837 43 H 0.170 0.830 44 H 0.172 0.828 45 H 0.160 0.840 46 H 0.139 0.861 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.312 0.252 -3.913 20.687 hybrid contribution 0.391 -2.232 1.091 2.515 sum -19.921 -1.980 -2.822 20.217 Atomic orbital electron populations 1.20638 0.80145 1.06504 1.05434 1.25661 0.98326 0.82023 1.01878 1.74041 0.96225 1.25826 1.21416 1.74380 1.12678 1.08212 1.20729 1.23232 0.82312 0.91479 1.03672 1.59024 1.26323 1.28151 1.05493 1.22324 0.98882 0.94861 0.89972 1.21630 0.95291 0.98579 0.99289 1.21489 1.01955 0.97234 0.93382 1.18581 0.90118 0.92988 0.94503 0.99297 1.21298 1.01173 1.26361 1.07608 0.92796 1.25607 0.95296 0.97956 0.98945 1.70015 1.05590 1.41992 1.37583 0.85720 0.77112 0.79542 0.80305 1.19501 1.21432 1.19580 1.22699 1.01266 0.93923 0.87550 1.47716 1.06964 1.08846 1.54942 1.21256 1.04418 0.77285 0.95679 1.19936 0.97231 0.99898 0.96027 1.21486 0.96332 0.99038 0.95664 1.21504 1.00487 0.97421 0.94801 1.21543 0.94038 0.96852 1.00708 1.21353 0.98114 1.00771 0.94978 1.21335 0.97890 0.97801 0.96001 0.87890 0.87515 0.87311 0.92633 0.90076 0.89321 0.93166 0.94203 0.91574 0.93028 0.95276 0.90514 0.88217 0.83655 0.83050 0.82839 0.83967 0.86146 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 8.75 71.24 0.62 -0.26 16 2 C 0.19 5.02 7.88 137.64 1.09 6.11 16 3 N -0.33 -12.15 12.18 -49.54 -0.60 -12.75 16 4 N -0.32 -13.47 12.23 -58.00 -0.71 -14.18 16 5 C 0.35 13.13 6.63 260.11 1.72 14.86 16 6 N -0.47 -18.43 4.70 -706.16 -3.32 -21.74 16 7 C 0.07 2.17 5.19 86.33 0.45 2.61 16 8 C -0.11 -3.97 6.09 30.65 0.19 -3.78 16 9 C -0.10 -4.53 5.02 30.68 0.15 -4.37 16 10 C 0.06 2.83 2.26 -11.49 -0.03 2.80 16 11 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 12 C -0.53 -27.74 8.57 25.60 0.22 -27.52 16 13 H 0.05 2.78 7.75 -2.91 -0.02 2.76 16 14 C 0.02 1.14 5.30 84.65 0.45 1.59 16 15 N -0.91 -51.34 11.35 21.45 0.24 -51.10 16 16 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 C 0.07 3.04 4.40 86.33 0.38 3.42 16 21 N -0.49 -13.70 2.79 -518.90 -1.45 -15.14 16 22 C 0.13 2.86 5.26 85.63 0.45 3.31 16 23 C -0.13 -3.03 5.30 -19.87 -0.11 -3.13 16 24 C -0.11 -2.00 9.51 22.27 0.21 -1.79 16 25 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 26 C -0.11 -2.42 10.05 22.27 0.22 -2.20 16 27 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 28 C -0.11 -3.18 8.01 22.27 0.18 -3.00 16 29 H 0.10 1.03 6.86 -2.39 -0.02 1.01 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 0.71 7.37 -2.39 -0.02 0.69 16 32 H 0.06 1.57 5.25 -2.39 -0.01 1.56 16 33 H 0.08 2.48 8.10 -2.39 -0.02 2.46 16 34 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 3.36 6.15 -2.39 -0.01 3.35 16 38 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 39 H 0.03 1.40 8.10 -2.39 -0.02 1.38 16 40 H 0.08 2.89 1.65 -2.38 0.00 2.89 16 41 H 0.10 2.29 4.28 -2.39 -0.01 2.28 16 42 H 0.15 1.80 7.48 -2.39 -0.02 1.78 16 43 H 0.15 1.86 4.84 -2.91 -0.01 1.85 16 44 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 45 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 46 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 47 H 0.12 3.86 6.09 -2.91 -0.02 3.84 16 Total: -1.00 -72.22 359.52 3.84 -68.38 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 1.00 Total: 19.13 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 6.65 Total: -16.79 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -5.83 Total: -114.91 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -72.22 3.84 -68.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597293820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.318 kcal (2) G-P(sol) polarization free energy of solvation -72.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds