Wall clock time and date at job start Tue Mar 31 2020 14:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35946 * 117.00009 * 2 1 4 4 C 1.38736 * 120.02985 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.97191 * 180.02562 * 4 3 2 6 6 C 1.38478 * 120.03040 * 0.02562 * 5 4 3 7 7 F 1.35096 * 119.97073 * 179.97438 * 6 5 4 8 8 C 1.38437 * 120.06186 * 359.97438 * 6 5 4 9 9 C 1.50693 * 119.98636 * 179.97438 * 8 6 5 10 10 N 1.46901 * 109.47360 * 285.00258 * 9 8 6 11 11 C 1.46899 * 111.00076 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46798 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47555 * 304.99556 * 12 11 10 14 14 O 1.42901 * 109.47612 * 65.00079 * 12 11 10 15 15 C 1.53000 * 109.47000 * 185.00066 * 12 11 10 16 16 N 1.46905 * 109.47114 * 180.02562 * 15 12 11 17 17 C 1.46900 * 110.99850 * 293.94896 * 16 15 12 18 18 C 1.46906 * 111.00051 * 169.99929 * 16 15 12 19 19 C 1.50699 * 109.47140 * 189.99841 * 18 16 15 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 16 21 21 C 1.37873 * 119.99861 * 180.02562 * 19 18 16 22 22 N 1.31522 * 120.00244 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99980 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46946 * 59.99897 * 23 21 19 25 25 H 1.48506 * 109.46938 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46921 * 299.99580 * 23 21 19 27 27 C 1.38173 * 120.02352 * 0.25897 * 8 6 5 28 28 H 1.08998 * 109.47351 * 300.00160 * 1 2 3 29 29 H 1.08996 * 109.46723 * 60.00333 * 1 2 3 30 30 H 1.09001 * 109.46533 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.01285 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.98448 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47183 * 165.00052 * 9 8 6 34 34 H 1.09001 * 109.47380 * 45.00402 * 9 8 6 35 35 H 1.00896 * 110.99720 * 56.04006 * 10 9 8 36 36 H 1.08995 * 109.47186 * 60.00137 * 11 10 9 37 37 H 1.08998 * 109.47052 * 299.99451 * 11 10 9 38 38 H 0.96697 * 113.99735 * 59.99435 * 14 12 11 39 39 H 1.08997 * 109.47704 * 60.00204 * 15 12 11 40 40 H 1.09000 * 109.47058 * 299.99530 * 15 12 11 41 41 H 1.08996 * 109.47030 * 296.04770 * 17 16 15 42 42 H 1.08999 * 109.46702 * 56.04909 * 17 16 15 43 43 H 1.08996 * 109.46890 * 176.04778 * 17 16 15 44 44 H 1.09004 * 109.47040 * 309.99779 * 18 16 15 45 45 H 1.09000 * 109.47033 * 69.99731 * 18 16 15 46 46 H 0.96992 * 120.00038 * 179.97438 * 22 21 19 47 47 H 1.08004 * 120.01020 * 179.72179 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9195 3.6053 -0.0011 6 6 3.3024 3.6771 -0.0016 7 9 3.9157 4.8808 -0.0027 8 6 4.0571 2.5165 -0.0011 9 6 5.5619 2.5966 -0.0022 10 7 6.0309 2.9794 -1.3407 11 6 7.4967 3.0670 -1.3798 12 6 7.9463 3.4664 -2.7866 13 1 7.5333 2.7661 -3.5127 14 8 7.4809 4.7855 -3.0791 15 6 9.4742 3.4364 -2.8615 16 7 9.9059 3.8205 -4.2121 17 6 9.4879 2.8198 -5.2029 18 6 11.3587 4.0336 -4.2598 19 6 11.7318 4.6581 -5.5795 20 1 10.9663 4.8747 -6.3100 21 6 13.0504 4.9520 -5.8548 22 7 13.9826 4.6879 -4.9654 23 14 13.5128 5.7269 -7.4905 24 1 12.8169 7.0307 -7.6349 25 1 14.9814 5.9421 -7.5386 26 1 13.1077 4.8242 -8.5979 27 6 3.4310 1.2847 -0.0054 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2126 2.3195 -0.0014 32 1 1.3320 4.5114 -0.0019 33 1 5.9777 1.6249 0.2643 34 1 5.8866 3.3422 0.7235 35 1 5.6084 3.8462 -1.6376 36 1 7.9256 2.0984 -1.1231 37 1 7.8352 3.8157 -0.6636 38 1 7.8096 5.4622 -2.4715 39 1 9.8293 2.4304 -2.6386 40 1 9.8873 4.1368 -2.1355 41 1 9.9870 1.8731 -4.9959 42 1 8.4082 2.6814 -5.1462 43 1 9.7584 3.1623 -6.2016 44 1 11.6555 4.6968 -3.4472 45 1 11.8699 3.0768 -4.1531 46 1 14.9102 4.8943 -5.1593 47 1 4.0200 0.3794 -0.0095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598729991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:12 Heat of formation + Delta-G solvation = -100.926026 kcal Electronic energy + Delta-G solvation = -26997.765110 eV Core-core repulsion = 22902.503685 eV Total energy + Delta-G solvation = -4095.261426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.10105 -40.51393 -38.47234 -37.80401 -35.96913 -34.96448 -32.49886 -32.07049 -30.52762 -29.39187 -27.71161 -27.13861 -26.40573 -24.83588 -23.22503 -23.11964 -21.59098 -21.18605 -20.11064 -18.31167 -17.70303 -17.33354 -16.60529 -16.31222 -16.23816 -15.93139 -15.75295 -15.15732 -15.04169 -14.84117 -14.70561 -14.45597 -14.13203 -13.94775 -13.65130 -13.31938 -13.23276 -13.02649 -12.78831 -12.70224 -12.42549 -12.09737 -11.89984 -11.81669 -11.32958 -11.26873 -11.16492 -11.07504 -10.85213 -10.72091 -10.62461 -10.24590 -9.97444 -9.62001 -9.44897 -9.09189 -8.60660 -8.43167 -8.40004 -7.15134 -5.99503 -4.00368 0.72158 0.85569 2.77856 3.12577 3.36801 3.40026 3.43912 3.95482 4.02198 4.24459 4.32414 4.46489 4.55241 4.65370 4.68064 4.71066 4.81107 4.91861 4.98120 5.01668 5.18691 5.26157 5.32228 5.36695 5.40211 5.52070 5.54936 5.68694 5.69514 5.78335 5.80039 5.91333 6.10342 6.24999 6.28084 6.37188 6.46071 6.78825 6.82689 6.90264 7.23025 7.30684 7.36633 7.83686 8.01365 8.14276 8.24850 8.59528 9.07501 9.63663 11.11426 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.027559 B = 0.001852 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.763635 B =15118.232997 C =15379.555885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.118 3.882 4 C -0.183 4.183 5 C -0.112 4.112 6 C 0.067 3.933 7 F -0.138 7.138 8 C -0.071 4.071 9 C 0.097 3.903 10 N -0.679 5.679 11 C 0.028 3.972 12 C 0.114 3.886 13 H 0.104 0.896 14 O -0.546 6.546 15 C 0.025 3.975 16 N -0.529 5.529 17 C 0.037 3.963 18 C 0.193 3.807 19 C -0.505 4.505 20 H 0.063 0.937 21 C 0.054 3.946 22 N -0.901 5.901 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.277 1.277 27 C -0.107 4.107 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.351 0.649 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.367 0.633 39 H 0.029 0.971 40 H 0.068 0.932 41 H 0.009 0.991 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.028 0.972 45 H -0.011 1.011 46 H 0.261 0.739 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.523 -7.645 15.003 32.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.073 3.927 4 C -0.202 4.202 5 C -0.131 4.131 6 C 0.047 3.953 7 F -0.116 7.116 8 C -0.072 4.072 9 C -0.032 4.032 10 N -0.311 5.311 11 C -0.102 4.102 12 C 0.054 3.946 13 H 0.121 0.879 14 O -0.349 6.349 15 C -0.105 4.105 16 N -0.253 5.253 17 C -0.111 4.111 18 C 0.068 3.932 19 C -0.544 4.544 20 H 0.082 0.918 21 C -0.147 4.147 22 N -0.541 5.541 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.126 4.126 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.170 0.830 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.214 0.786 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.007 0.993 46 H 0.071 0.929 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -27.741 -8.286 14.177 32.237 hybrid contribution 1.074 1.040 0.387 1.544 sum -26.667 -7.245 14.563 31.237 Atomic orbital electron populations 1.23099 0.78149 1.04227 1.01441 1.86104 1.21541 1.26450 1.88659 1.18986 0.92232 0.84385 0.97143 1.21076 1.00387 0.91386 1.07334 1.20898 0.92580 0.98796 1.00829 1.17452 0.90718 0.80389 1.06713 1.91498 1.83242 1.42721 1.94178 1.19625 0.96111 0.91300 1.00169 1.20831 0.89106 1.02080 0.91164 1.60471 1.06923 1.40009 1.23723 1.22723 0.87694 1.01532 0.98278 1.21983 0.93157 0.85260 0.94238 0.87855 1.86602 1.73503 1.16543 1.58286 1.22695 0.94719 0.99056 0.94012 1.62023 1.18181 1.43439 1.01700 1.22239 0.98153 0.92685 0.98042 1.19747 0.80120 0.95350 0.98028 1.21140 0.92347 1.39793 1.01083 0.91841 1.24998 0.96450 0.96055 0.97227 1.69952 1.00850 1.48571 1.34702 0.86541 0.77033 0.79894 0.83820 1.20146 1.21415 1.20291 1.20159 0.91241 0.97684 1.03492 0.92557 0.92449 0.88024 0.84568 0.84390 0.89398 0.93650 0.82968 0.90134 0.94729 0.78637 0.95280 0.91331 0.97258 0.93376 0.90885 0.95428 0.99302 0.92939 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.56 10.50 -19.57 -0.21 -2.77 16 3 C 0.12 1.03 6.69 -39.23 -0.26 0.77 16 4 C -0.18 -1.36 9.04 -39.44 -0.36 -1.72 16 5 C -0.11 -0.93 10.02 -39.54 -0.40 -1.32 16 6 C 0.07 0.68 7.10 -39.42 -0.28 0.40 16 7 F -0.14 -1.55 16.35 2.25 0.04 -1.51 16 8 C -0.07 -0.70 5.43 -104.58 -0.57 -1.27 16 9 C 0.10 0.95 5.50 -4.98 -0.03 0.92 16 10 N -0.68 -7.90 6.49 -115.06 -0.75 -8.65 16 11 C 0.03 0.33 5.36 -3.83 -0.02 0.31 16 12 C 0.11 1.68 3.08 -26.73 -0.08 1.60 16 13 H 0.10 1.65 6.47 -51.93 -0.34 1.31 16 14 O -0.55 -8.64 12.72 -35.23 -0.45 -9.09 16 15 C 0.03 0.44 4.62 -3.82 -0.02 0.42 16 16 N -0.53 -11.71 4.62 -244.36 -1.13 -12.84 16 17 C 0.04 0.76 9.16 60.06 0.55 1.32 16 18 C 0.19 5.12 4.72 -4.97 -0.02 5.10 16 19 C -0.50 -14.53 8.52 -34.44 -0.29 -14.82 16 20 H 0.06 1.82 7.10 -52.48 -0.37 1.45 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 23 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C -0.11 -0.99 9.60 -39.44 -0.38 -1.36 16 28 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 29 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.14 0.66 6.30 -52.49 -0.33 0.32 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.09 0.76 7.95 -51.93 -0.41 0.35 16 34 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.35 4.40 7.75 -39.29 -0.30 4.09 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.37 4.81 9.04 45.56 0.41 5.23 16 39 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 40 H 0.07 1.19 7.93 -51.93 -0.41 0.77 16 41 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.05 0.87 6.30 -51.93 -0.33 0.54 16 43 H 0.07 1.60 6.86 -51.93 -0.36 1.24 16 44 H 0.03 0.78 7.93 -51.93 -0.41 0.36 16 45 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.14 1.17 8.00 -52.48 -0.42 0.75 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -32.91 389.14 -8.75 -41.66 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.58 Total: 3.79 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.26 Total: -7.11 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -1.14 Total: -47.88 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.65 Total: -11.86 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.91 -8.75 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598729991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.263 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds