Wall clock time and date at job start Tue Mar 31 2020 14:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35946 * 117.00009 * 2 1 4 4 C 1.38736 * 120.02985 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.97191 * 180.02562 * 4 3 2 6 6 C 1.38478 * 120.03040 * 0.02562 * 5 4 3 7 7 F 1.35096 * 119.97073 * 179.97438 * 6 5 4 8 8 C 1.38437 * 120.06186 * 359.97438 * 6 5 4 9 9 C 1.50693 * 119.98636 * 179.97438 * 8 6 5 10 10 N 1.46901 * 109.47360 * 285.00258 * 9 8 6 11 11 C 1.46899 * 111.00076 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46798 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47555 * 304.99556 * 12 11 10 14 14 O 1.42901 * 109.47612 * 65.00079 * 12 11 10 15 15 C 1.53000 * 109.47000 * 185.00066 * 12 11 10 16 16 N 1.46905 * 109.47114 * 180.02562 * 15 12 11 17 17 C 1.46900 * 110.99850 * 293.94896 * 16 15 12 18 18 C 1.46906 * 111.00051 * 169.99929 * 16 15 12 19 19 C 1.50699 * 109.47140 * 189.99841 * 18 16 15 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 16 21 21 C 1.37873 * 119.99861 * 180.02562 * 19 18 16 22 22 N 1.31522 * 120.00244 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99980 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46946 * 59.99897 * 23 21 19 25 25 H 1.48506 * 109.46938 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46921 * 299.99580 * 23 21 19 27 27 C 1.38173 * 120.02352 * 0.25897 * 8 6 5 28 28 H 1.08998 * 109.47351 * 300.00160 * 1 2 3 29 29 H 1.08996 * 109.46723 * 60.00333 * 1 2 3 30 30 H 1.09001 * 109.46533 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.01285 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.98448 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47183 * 165.00052 * 9 8 6 34 34 H 1.09001 * 109.47380 * 45.00402 * 9 8 6 35 35 H 1.00896 * 110.99720 * 56.04006 * 10 9 8 36 36 H 1.08995 * 109.47186 * 60.00137 * 11 10 9 37 37 H 1.08998 * 109.47052 * 299.99451 * 11 10 9 38 38 H 0.96697 * 113.99735 * 59.99435 * 14 12 11 39 39 H 1.08997 * 109.47704 * 60.00204 * 15 12 11 40 40 H 1.09000 * 109.47058 * 299.99530 * 15 12 11 41 41 H 1.08996 * 109.47030 * 296.04770 * 17 16 15 42 42 H 1.08999 * 109.46702 * 56.04909 * 17 16 15 43 43 H 1.08996 * 109.46890 * 176.04778 * 17 16 15 44 44 H 1.09004 * 109.47040 * 309.99779 * 18 16 15 45 45 H 1.09000 * 109.47033 * 69.99731 * 18 16 15 46 46 H 0.96992 * 120.00038 * 179.97438 * 22 21 19 47 47 H 1.08004 * 120.01020 * 179.72179 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9195 3.6053 -0.0011 6 6 3.3024 3.6771 -0.0016 7 9 3.9157 4.8808 -0.0027 8 6 4.0571 2.5165 -0.0011 9 6 5.5619 2.5966 -0.0022 10 7 6.0309 2.9794 -1.3407 11 6 7.4967 3.0670 -1.3798 12 6 7.9463 3.4664 -2.7866 13 1 7.5333 2.7661 -3.5127 14 8 7.4809 4.7855 -3.0791 15 6 9.4742 3.4364 -2.8615 16 7 9.9059 3.8205 -4.2121 17 6 9.4879 2.8198 -5.2029 18 6 11.3587 4.0336 -4.2598 19 6 11.7318 4.6581 -5.5795 20 1 10.9663 4.8747 -6.3100 21 6 13.0504 4.9520 -5.8548 22 7 13.9826 4.6879 -4.9654 23 14 13.5128 5.7269 -7.4905 24 1 12.8169 7.0307 -7.6349 25 1 14.9814 5.9421 -7.5386 26 1 13.1077 4.8242 -8.5979 27 6 3.4310 1.2847 -0.0054 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2126 2.3195 -0.0014 32 1 1.3320 4.5114 -0.0019 33 1 5.9777 1.6249 0.2643 34 1 5.8866 3.3422 0.7235 35 1 5.6084 3.8462 -1.6376 36 1 7.9256 2.0984 -1.1231 37 1 7.8352 3.8157 -0.6636 38 1 7.8096 5.4622 -2.4715 39 1 9.8293 2.4304 -2.6386 40 1 9.8873 4.1368 -2.1355 41 1 9.9870 1.8731 -4.9959 42 1 8.4082 2.6814 -5.1462 43 1 9.7584 3.1623 -6.2016 44 1 11.6555 4.6968 -3.4472 45 1 11.8699 3.0768 -4.1531 46 1 14.9102 4.8943 -5.1593 47 1 4.0200 0.3794 -0.0095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598729991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:11 Heat of formation + Delta-G solvation = -126.307309 kcal Electronic energy + Delta-G solvation = -26998.865725 eV Core-core repulsion = 22902.503685 eV Total energy + Delta-G solvation = -4096.362041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.86811 -41.09894 -39.66497 -38.58470 -37.37636 -36.06214 -34.61585 -32.86774 -31.32774 -30.54675 -29.04281 -28.16140 -27.64386 -26.20078 -24.52191 -23.87326 -22.66471 -22.21791 -21.71466 -18.91740 -18.57054 -18.37346 -17.99276 -17.47144 -17.21271 -16.88024 -16.72108 -16.42507 -16.26661 -15.88445 -15.70121 -15.54047 -15.43548 -15.03298 -14.86285 -14.60553 -14.09272 -13.85800 -13.78458 -13.76879 -13.45397 -13.28585 -13.17387 -12.93469 -12.70318 -12.62126 -12.53800 -12.52153 -12.38070 -12.00580 -11.82843 -11.76519 -11.60952 -11.41990 -10.75903 -10.61270 -10.11714 -9.46264 -9.09699 -8.95835 -8.20552 -6.30498 0.07751 0.19864 1.40860 1.44363 1.52276 2.28915 2.40234 2.47154 3.00250 3.11737 3.30303 3.45185 3.62415 3.68303 3.70681 3.96967 4.01910 4.09213 4.21607 4.22132 4.25962 4.42503 4.43351 4.43644 4.54752 4.56957 4.67814 4.71624 4.73681 4.77013 4.79960 4.90459 5.06202 5.07990 5.14916 5.17243 5.19412 5.23215 5.32005 5.64002 5.64765 5.90514 6.05272 6.28395 6.32637 6.37046 6.63588 6.85153 6.94471 7.39075 8.90125 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.027559 B = 0.001852 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.763635 B =15118.232997 C =15379.555885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.113 3.887 4 C -0.178 4.178 5 C -0.113 4.113 6 C 0.043 3.957 7 F -0.149 7.149 8 C -0.080 4.080 9 C 0.099 3.901 10 N -0.684 5.684 11 C 0.038 3.962 12 C 0.127 3.873 13 H 0.095 0.905 14 O -0.561 6.561 15 C 0.025 3.975 16 N -0.540 5.540 17 C 0.042 3.958 18 C 0.207 3.793 19 C -0.525 4.525 20 H 0.060 0.940 21 C 0.001 3.999 22 N -0.934 5.934 23 Si 0.970 3.030 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.268 1.268 27 C -0.119 4.119 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.345 0.655 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.379 0.621 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.010 0.990 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.005 0.995 45 H -0.038 1.038 46 H 0.265 0.735 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.491 -7.864 14.916 33.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.067 3.933 4 C -0.196 4.196 5 C -0.131 4.131 6 C 0.024 3.976 7 F -0.128 7.128 8 C -0.081 4.081 9 C -0.029 4.029 10 N -0.316 5.316 11 C -0.092 4.092 12 C 0.067 3.933 13 H 0.113 0.887 14 O -0.367 6.367 15 C -0.104 4.104 16 N -0.264 5.264 17 C -0.107 4.107 18 C 0.081 3.919 19 C -0.563 4.563 20 H 0.078 0.922 21 C -0.197 4.197 22 N -0.575 5.575 23 Si 0.794 3.206 24 H -0.194 1.194 25 H -0.207 1.207 26 H -0.193 1.193 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.182 0.818 32 H 0.175 0.825 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.163 0.837 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.227 0.773 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.029 0.971 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.023 0.977 45 H -0.021 1.021 46 H 0.073 0.927 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -29.738 -8.517 14.107 33.999 hybrid contribution 1.571 1.043 0.474 1.945 sum -28.167 -7.474 14.582 32.586 Atomic orbital electron populations 1.23404 0.76150 1.05787 1.02549 1.86088 1.23686 1.26280 1.88494 1.19140 0.92278 0.85132 0.96739 1.21377 1.01770 0.90519 1.05949 1.21172 0.92020 0.99985 0.99956 1.17733 0.91653 0.80058 1.08177 1.91461 1.83571 1.43356 1.94444 1.19638 0.96036 0.91576 1.00854 1.20848 0.89421 1.02539 0.90106 1.60461 1.06497 1.39636 1.25024 1.22550 0.88105 1.02253 0.96260 1.21798 0.90628 0.84892 0.95935 0.88712 1.86564 1.73660 1.17260 1.59203 1.22802 0.96886 0.99233 0.91507 1.61931 1.15082 1.44906 1.04438 1.22205 0.99759 0.92077 0.96615 1.19406 0.82820 0.93194 0.96476 1.21443 0.92735 1.40226 1.01903 0.92151 1.25918 0.96316 0.96368 1.01106 1.70074 1.01265 1.49376 1.36746 0.85428 0.76926 0.79080 0.79127 1.19427 1.20676 1.19299 1.20287 0.91972 0.97627 1.03958 0.91177 0.91516 0.86430 0.81771 0.82539 0.88290 0.93637 0.83650 0.89126 0.93814 0.77339 0.94688 0.91300 0.97126 0.90642 0.92734 0.97724 1.02077 0.92675 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.89 10.50 -92.94 -0.98 -5.86 16 3 C 0.11 1.81 6.69 22.50 0.15 1.96 16 4 C -0.18 -2.27 9.04 22.36 0.20 -2.07 16 5 C -0.11 -1.69 10.02 22.30 0.22 -1.47 16 6 C 0.04 0.85 7.10 22.37 0.16 1.01 16 7 F -0.15 -3.33 16.35 44.97 0.74 -2.60 16 8 C -0.08 -1.53 5.43 -19.83 -0.11 -1.63 16 9 C 0.10 1.86 5.50 85.55 0.47 2.34 16 10 N -0.68 -15.27 6.49 -517.95 -3.36 -18.63 16 11 C 0.04 0.85 5.36 86.30 0.46 1.31 16 12 C 0.13 3.64 3.08 30.59 0.09 3.74 16 13 H 0.10 2.90 6.47 -2.39 -0.02 2.88 16 14 O -0.56 -17.33 12.72 -148.98 -1.90 -19.22 16 15 C 0.02 0.87 4.62 86.30 0.40 1.27 16 16 N -0.54 -24.05 4.62 -927.03 -4.28 -28.33 16 17 C 0.04 1.70 9.16 127.69 1.17 2.87 16 18 C 0.21 11.34 4.72 85.56 0.40 11.75 16 19 C -0.52 -30.65 8.52 25.60 0.22 -30.44 16 20 H 0.06 3.49 7.10 -2.91 -0.02 3.47 16 21 C 0.00 0.05 5.46 84.65 0.46 0.51 16 22 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 23 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C -0.12 -2.12 9.60 22.36 0.21 -1.90 16 28 H 0.07 0.23 7.66 -2.39 -0.02 0.22 16 29 H 0.07 0.28 7.66 -2.39 -0.02 0.27 16 30 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.16 1.06 6.30 -2.91 -0.02 1.05 16 32 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.10 1.60 7.95 -2.38 -0.02 1.58 16 34 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 35 H 0.34 8.43 7.75 -89.70 -0.70 7.74 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.38 9.66 9.04 -74.06 -0.67 8.99 16 39 H 0.03 1.19 8.12 -2.39 -0.02 1.17 16 40 H 0.07 2.38 7.93 -2.39 -0.02 2.36 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.08 2.64 6.30 -2.39 -0.02 2.62 16 43 H 0.05 2.39 6.86 -2.39 -0.02 2.38 16 44 H 0.00 0.27 7.93 -2.38 -0.02 0.25 16 45 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 46 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 47 H 0.15 2.33 8.00 -2.91 -0.02 2.30 16 Total: -1.00 -70.98 389.14 -2.21 -73.20 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.38 Total: 20.44 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 5.63 Total: -9.55 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -7.36 Total: -103.68 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -2.87 Total: -25.09 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.74 Total: -2.60 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -70.98 -2.21 -73.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598729991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.112 kcal (2) G-P(sol) polarization free energy of solvation -70.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds