Wall clock time and date at job start Tue Mar 31 2020 14:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35954 * 116.99767 * 2 1 4 4 C 1.38729 * 120.02690 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.96775 * 179.97438 * 4 3 2 6 6 C 1.38475 * 120.02910 * 0.02562 * 5 4 3 7 7 F 1.35103 * 119.97095 * 179.97438 * 6 5 4 8 8 C 1.38439 * 120.06088 * 359.97438 * 6 5 4 9 9 C 1.50702 * 119.98398 * 179.97438 * 8 6 5 10 10 N 1.46900 * 109.46790 * 284.99861 * 9 8 6 11 11 C 1.46903 * 111.00131 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47302 * 180.02562 * 11 10 9 13 13 H 1.08992 * 109.47135 * 59.99463 * 12 11 10 14 14 O 1.42897 * 109.46674 * 299.99470 * 12 11 10 15 15 C 1.53004 * 109.46799 * 179.97438 * 12 11 10 16 16 N 1.46898 * 109.46619 * 184.99872 * 15 12 11 17 17 C 1.46901 * 111.00443 * 66.04574 * 16 15 12 18 18 C 1.46906 * 110.99820 * 189.99887 * 16 15 12 19 19 C 1.50696 * 109.47351 * 169.99890 * 18 16 15 20 20 H 1.08007 * 119.99780 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00506 * 180.02562 * 19 18 16 22 22 N 1.31510 * 120.00248 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99357 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46811 * 90.00524 * 23 21 19 25 25 H 1.48502 * 109.46643 * 209.99901 * 23 21 19 26 26 H 1.48499 * 109.47300 * 329.99977 * 23 21 19 27 27 C 1.38169 * 120.02841 * 0.25608 * 8 6 5 28 28 H 1.09001 * 109.47339 * 299.99537 * 1 2 3 29 29 H 1.09002 * 109.47787 * 59.99646 * 1 2 3 30 30 H 1.09002 * 109.47086 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.01770 * 359.97344 * 4 3 2 32 32 H 1.07997 * 119.98708 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46904 * 165.00002 * 9 8 6 34 34 H 1.08998 * 109.47520 * 44.99559 * 9 8 6 35 35 H 1.00901 * 111.00381 * 303.95622 * 10 9 8 36 36 H 1.08996 * 109.47237 * 59.99345 * 11 10 9 37 37 H 1.09009 * 109.46499 * 299.99967 * 11 10 9 38 38 H 0.96701 * 114.00549 * 300.00026 * 14 12 11 39 39 H 1.08994 * 109.47270 * 64.99737 * 15 12 11 40 40 H 1.08999 * 109.47017 * 304.99614 * 15 12 11 41 41 H 1.09002 * 109.47401 * 183.95136 * 17 16 15 42 42 H 1.09001 * 109.46874 * 63.95149 * 17 16 15 43 43 H 1.09004 * 109.46970 * 303.95282 * 17 16 15 44 44 H 1.08997 * 109.46995 * 289.99871 * 18 16 15 45 45 H 1.09001 * 109.46848 * 49.99877 * 18 16 15 46 46 H 0.96999 * 119.99895 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.01347 * 179.72198 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9194 3.6053 0.0011 6 6 3.3023 3.6771 0.0005 7 9 3.9156 4.8809 0.0005 8 6 4.0569 2.5165 0.0000 9 6 5.5618 2.5967 -0.0012 10 7 6.0306 2.9806 -1.3394 11 6 7.4965 3.0683 -1.3786 12 6 7.9459 3.4701 -2.7849 13 1 7.5170 4.4389 -3.0404 14 8 7.5021 2.4897 -3.7250 15 6 9.4726 3.5620 -2.8255 16 7 9.8982 4.0628 -4.1392 17 6 9.4590 5.4500 -4.3414 18 6 11.3531 3.9421 -4.3026 19 6 11.7234 4.2304 -5.7346 20 1 10.9549 4.4788 -6.4517 21 6 13.0434 4.1769 -6.1296 22 7 13.3666 4.4290 -7.3792 23 14 14.3726 3.7479 -4.8893 24 1 14.5770 2.2771 -4.8716 25 1 15.6410 4.4193 -5.2710 26 1 13.9567 4.2063 -3.5394 27 6 3.4310 1.2847 -0.0053 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2125 2.3195 0.0005 32 1 1.3319 4.5115 0.0011 33 1 5.9776 1.6247 0.2645 34 1 5.8866 3.3417 0.7251 35 1 5.6881 2.3404 -2.0400 36 1 7.9254 2.0995 -1.1226 37 1 7.8350 3.8164 -0.6617 38 1 7.8456 1.6012 -3.5586 39 1 9.9007 2.5739 -2.6572 40 1 9.8164 4.2441 -2.0478 41 1 9.7257 5.7726 -5.3479 42 1 9.9474 6.0957 -3.6116 43 1 8.3781 5.5110 -4.2147 44 1 11.8527 4.6557 -3.6475 45 1 11.6651 2.9305 -4.0432 46 1 14.2951 4.3910 -7.6571 47 1 4.0200 0.3795 -0.0103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598729992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:15 Heat of formation + Delta-G solvation = -95.045271 kcal Electronic energy + Delta-G solvation = -27033.026331 eV Core-core repulsion = 22938.019915 eV Total energy + Delta-G solvation = -4095.006417 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.92767 -40.52839 -38.56359 -37.84565 -36.09636 -35.04852 -32.46800 -32.08649 -30.54661 -29.57654 -27.80338 -27.61462 -26.48670 -24.90032 -23.20966 -22.96935 -21.60568 -21.10233 -20.09727 -18.36323 -17.62850 -17.37403 -16.95144 -16.32776 -16.27703 -16.05895 -15.67524 -15.17655 -15.12341 -14.73282 -14.66112 -14.55216 -14.19130 -13.95751 -13.68675 -13.57983 -13.20572 -13.07885 -12.75401 -12.63804 -12.48336 -12.25179 -12.06003 -11.97115 -11.59296 -11.28507 -11.19951 -11.18933 -10.95826 -10.77556 -10.52244 -10.27385 -10.02692 -9.61908 -9.44823 -9.21088 -8.60617 -8.54963 -8.43887 -7.30288 -6.02624 -3.99649 0.69599 0.87107 2.76317 3.11657 3.28640 3.36045 3.37578 3.94308 4.01844 4.24598 4.30361 4.43216 4.52533 4.61128 4.63619 4.66646 4.78679 4.89229 4.95070 4.99924 5.14462 5.16412 5.25956 5.27200 5.31575 5.44326 5.50756 5.60855 5.66292 5.70072 5.78800 5.88728 5.95798 6.13784 6.27603 6.30234 6.36259 6.72107 6.74607 6.88212 6.88851 7.01829 7.21116 7.60477 7.91769 7.92908 8.10629 8.69022 9.07329 9.58897 11.10583 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026444 B = 0.001920 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.575974 B =14579.172003 C =14877.009060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.115 3.885 4 C -0.179 4.179 5 C -0.118 4.118 6 C 0.090 3.910 7 F -0.129 7.129 8 C -0.081 4.081 9 C 0.100 3.900 10 N -0.677 5.677 11 C 0.029 3.971 12 C 0.114 3.886 13 H 0.106 0.894 14 O -0.544 6.544 15 C 0.022 3.978 16 N -0.521 5.521 17 C 0.035 3.965 18 C 0.162 3.838 19 C -0.507 4.507 20 H 0.082 0.918 21 C 0.067 3.933 22 N -0.900 5.900 23 Si 0.875 3.125 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.269 1.269 27 C -0.117 4.117 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.351 0.649 36 H 0.033 0.967 37 H 0.080 0.920 38 H 0.366 0.634 39 H 0.069 0.931 40 H 0.030 0.970 41 H 0.079 0.921 42 H 0.010 0.990 43 H 0.051 0.949 44 H -0.013 1.013 45 H 0.022 0.978 46 H 0.263 0.737 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.291 -7.165 20.509 34.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.069 3.931 4 C -0.198 4.198 5 C -0.137 4.137 6 C 0.070 3.930 7 F -0.108 7.108 8 C -0.082 4.082 9 C -0.029 4.029 10 N -0.310 5.310 11 C -0.101 4.101 12 C 0.054 3.946 13 H 0.124 0.876 14 O -0.348 6.348 15 C -0.108 4.108 16 N -0.244 5.244 17 C -0.113 4.113 18 C 0.036 3.964 19 C -0.545 4.545 20 H 0.100 0.900 21 C -0.134 4.134 22 N -0.539 5.539 23 Si 0.703 3.297 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.194 1.194 27 C -0.136 4.136 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.170 0.830 36 H 0.051 0.949 37 H 0.098 0.902 38 H 0.212 0.788 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.098 0.902 42 H 0.029 0.971 43 H 0.070 0.930 44 H 0.004 0.996 45 H 0.040 0.960 46 H 0.073 0.927 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.622 -6.394 19.871 33.830 hybrid contribution 1.614 -0.749 1.541 2.354 sum -25.008 -7.143 21.412 33.688 Atomic orbital electron populations 1.23096 0.78135 1.04215 1.01454 1.86097 1.21555 1.26469 1.88758 1.18933 0.92155 0.84399 0.97579 1.21082 1.00375 0.91396 1.06990 1.20952 0.92755 0.98776 1.01213 1.17354 0.90271 0.80681 1.04647 1.91529 1.83228 1.42244 1.93776 1.19644 0.96164 0.91299 1.01092 1.20798 0.89035 1.00248 0.92822 1.60362 1.09748 1.56363 1.04483 1.22699 0.87558 1.00482 0.99398 1.21993 0.93023 0.93499 0.86081 0.87582 1.86641 1.73471 1.20422 1.54221 1.22760 0.95238 1.00470 0.92288 1.61858 1.16171 1.20416 1.25989 1.22293 0.98336 0.88443 1.02225 1.20200 0.82835 0.95431 0.97975 1.21047 0.93619 1.46666 0.93212 0.90041 1.24909 0.98377 0.95096 0.95056 1.69894 1.18175 1.49932 1.15945 0.86865 0.81763 0.78901 0.82215 1.20194 1.21199 1.19401 1.20185 0.91464 0.97560 1.04406 0.92563 0.92440 0.88040 0.84592 0.84380 0.93716 0.89628 0.82966 0.94860 0.90190 0.78823 0.91289 0.95191 0.90234 0.97126 0.93031 0.99553 0.96041 0.92697 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.50 10.50 -19.60 -0.21 -2.71 16 3 C 0.11 0.97 6.69 -39.24 -0.26 0.70 16 4 C -0.18 -1.31 9.04 -39.44 -0.36 -1.67 16 5 C -0.12 -0.98 10.02 -39.53 -0.40 -1.37 16 6 C 0.09 0.93 7.24 -39.42 -0.29 0.64 16 7 F -0.13 -1.56 16.75 2.25 0.04 -1.52 16 8 C -0.08 -0.77 5.40 -104.57 -0.56 -1.33 16 9 C 0.10 0.93 5.49 -4.97 -0.03 0.90 16 10 N -0.68 -7.42 6.49 -115.05 -0.75 -8.17 16 11 C 0.03 0.32 5.39 -3.82 -0.02 0.29 16 12 C 0.11 1.60 3.20 -26.73 -0.09 1.52 16 13 H 0.11 1.66 6.26 -51.93 -0.33 1.33 16 14 O -0.54 -8.12 12.62 -35.23 -0.44 -8.57 16 15 C 0.02 0.37 4.60 -3.82 -0.02 0.35 16 16 N -0.52 -11.11 4.70 -244.37 -1.15 -12.26 16 17 C 0.04 0.71 9.17 60.07 0.55 1.26 16 18 C 0.16 4.00 3.79 -4.97 -0.02 3.98 16 19 C -0.51 -14.71 9.07 -34.44 -0.31 -15.02 16 20 H 0.08 2.58 7.35 -52.48 -0.39 2.20 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 23 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 27 C -0.12 -1.02 9.60 -39.44 -0.38 -1.40 16 28 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 29 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.14 0.64 6.30 -52.49 -0.33 0.31 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.04 0.35 7.95 -51.93 -0.41 -0.06 16 34 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.35 3.90 8.11 -39.29 -0.32 3.58 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.37 4.29 9.05 45.56 0.41 4.70 16 39 H 0.07 1.08 7.93 -51.93 -0.41 0.67 16 40 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 41 H 0.08 1.77 6.86 -51.93 -0.36 1.41 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.05 0.91 6.21 -51.93 -0.32 0.59 16 44 H -0.01 -0.33 7.18 -51.93 -0.37 -0.70 16 45 H 0.02 0.53 7.36 -51.93 -0.38 0.14 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.14 1.03 8.00 -52.49 -0.42 0.61 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -33.80 386.22 -8.41 -42.21 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.54 Total: 3.50 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.28 Total: -8.18 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -1.12 Total: -47.59 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.65 Total: -11.27 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.80 -8.41 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598729992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.832 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds