Wall clock time and date at job start Tue Mar 31 2020 15:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47345 * 2 1 4 4 C 1.52995 * 109.47403 * 120.00522 * 2 1 3 5 5 C 1.53002 * 109.47427 * 175.00217 * 4 2 1 6 6 N 1.46499 * 109.47479 * 179.97438 * 5 4 2 7 7 C 1.46506 * 119.99925 * 270.00011 * 6 5 4 8 8 C 1.50699 * 109.46706 * 269.99864 * 7 6 5 9 9 H 1.07998 * 120.00471 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99849 * 180.02562 * 8 7 6 11 11 N 1.31506 * 119.99824 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99715 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47050 * 90.00202 * 12 10 8 14 14 H 1.48505 * 109.46881 * 209.99904 * 12 10 8 15 15 H 1.48493 * 109.47633 * 330.00165 * 12 10 8 16 16 C 1.34777 * 120.00195 * 89.99263 * 6 5 4 17 17 O 1.21603 * 119.99960 * 0.02562 * 16 6 5 18 18 N 1.34777 * 119.99726 * 180.27548 * 16 6 5 19 19 C 1.40851 * 119.99560 * 179.72622 * 18 16 6 20 20 C 1.40231 * 126.07812 * 0.02737 * 19 18 16 21 21 N 1.30839 * 108.34599 * 180.02562 * 20 19 18 22 22 N 1.40074 * 108.35804 * 359.97438 * 21 20 19 23 23 C 1.46504 * 126.05788 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47052 * 304.97812 * 23 22 21 25 25 F 1.39902 * 109.47414 * 180.02562 * 24 23 22 26 26 C 1.35732 * 126.07242 * 179.72105 * 19 18 16 27 27 H 1.08998 * 109.46925 * 299.99434 * 1 2 3 28 28 H 1.08998 * 109.47074 * 59.99888 * 1 2 3 29 29 H 1.09008 * 109.46753 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47471 * 240.00156 * 2 1 3 31 31 H 1.08999 * 109.47029 * 60.00015 * 3 2 1 32 32 H 1.09002 * 109.47173 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46904 * 300.00586 * 3 2 1 34 34 H 1.09001 * 109.47436 * 55.00012 * 4 2 1 35 35 H 1.09005 * 109.46868 * 294.99713 * 4 2 1 36 36 H 1.08994 * 109.47266 * 59.99778 * 5 4 2 37 37 H 1.09005 * 109.46685 * 299.99608 * 5 4 2 38 38 H 1.08994 * 109.46858 * 29.99458 * 7 6 5 39 39 H 1.09001 * 109.47111 * 149.99563 * 7 6 5 40 40 H 0.97009 * 119.99790 * 180.02562 * 11 10 8 41 41 H 0.97000 * 120.00483 * 359.73178 * 18 16 6 42 42 H 1.07998 * 125.82763 * 359.97438 * 20 19 18 43 43 H 1.09002 * 109.47140 * 64.97344 * 23 22 21 44 44 H 1.08999 * 109.47176 * 184.98083 * 23 22 21 45 45 H 1.09006 * 109.47392 * 300.00094 * 24 23 22 46 46 H 1.09008 * 109.47458 * 59.99915 * 24 23 22 47 47 H 1.07995 * 126.21923 * 359.95648 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1879 6 7 4.0534 -1.5212 2.3842 7 6 4.4018 -0.7530 3.5821 8 6 5.8557 -0.3611 3.5221 9 1 6.4599 -0.6552 2.6766 10 6 6.4149 0.3720 4.5472 11 7 7.6838 0.7136 4.4951 12 14 5.3702 0.8800 6.0100 13 1 5.4396 -0.1712 7.0568 14 1 5.8796 2.1615 6.5609 15 1 3.9609 1.0534 5.5754 16 6 4.1821 -2.8628 2.3830 17 8 3.8932 -3.5004 1.3886 18 7 4.6262 -3.4982 3.4855 19 6 4.7552 -4.9008 3.4861 20 6 4.4600 -5.7576 2.4160 21 7 4.7040 -6.9865 2.7930 22 7 5.1638 -6.9591 4.1158 23 6 5.5511 -8.1219 4.9185 24 6 4.3977 -9.1266 4.9503 25 9 4.7672 -10.2368 5.7172 26 6 5.1928 -5.6627 4.5206 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6055 -1.7199 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 3.9995 0.1674 1.1420 37 1 3.8532 -1.3940 0.3001 38 1 3.7853 0.1445 3.6302 39 1 4.2260 -1.3626 4.4685 40 1 8.0773 1.2290 5.2165 41 1 4.8569 -2.9896 4.2786 42 1 4.0931 -5.4549 1.4464 43 1 6.4300 -8.5917 4.4770 44 1 5.7819 -7.8015 5.9344 45 1 3.5186 -8.6569 5.3917 46 1 4.1667 -9.4470 3.9343 47 1 5.5051 -5.3037 5.4901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599861431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:50 Heat of formation + Delta-G solvation = -25.239908 kcal Electronic energy + Delta-G solvation = -27938.415719 eV Core-core repulsion = 23878.729041 eV Total energy + Delta-G solvation = -4059.686678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.186 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.74604 -42.34832 -40.95185 -38.00884 -36.42487 -35.90494 -34.52365 -34.38836 -31.18317 -30.71844 -29.55999 -28.41416 -27.93925 -24.79287 -24.61014 -24.45911 -22.30190 -22.01088 -20.83412 -20.37856 -19.03546 -18.83589 -18.45942 -17.51369 -17.29504 -16.71423 -16.51334 -16.31766 -16.11627 -15.90662 -15.78557 -15.25756 -15.14993 -14.80769 -14.63188 -14.62229 -14.22715 -13.91729 -13.73795 -13.64366 -13.54764 -13.18221 -12.95795 -12.67572 -12.61453 -12.47887 -12.15965 -12.09709 -12.05018 -11.77841 -11.70363 -11.61989 -11.58128 -11.51403 -11.35347 -11.00092 -10.76307 -10.37964 -9.48559 -8.57017 -8.27789 -6.36735 0.76622 1.32831 1.41664 1.45350 1.54335 1.63050 1.89877 2.36150 2.48959 3.04621 3.08068 3.29145 3.67321 3.86145 3.97139 4.00604 4.02797 4.05047 4.12499 4.25791 4.32548 4.37587 4.57436 4.62331 4.64042 4.70019 4.73561 4.80475 4.84157 4.87382 4.89500 4.97257 5.08096 5.16953 5.18892 5.24811 5.36778 5.44585 5.52355 5.55300 5.66998 5.86013 6.04329 6.11218 6.25468 6.62109 6.69269 7.01767 7.30176 7.65282 8.88560 Molecular weight = 326.19amu Principal moments of inertia in cm(-1) A = 0.009221 B = 0.003534 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.745002 B = 7921.050085 C =10254.175833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.116 4.116 5 C 0.136 3.864 6 N -0.610 5.610 7 C 0.220 3.780 8 C -0.542 4.542 9 H 0.026 0.974 10 C 0.021 3.979 11 N -0.942 5.942 12 Si 0.942 3.058 13 H -0.256 1.256 14 H -0.289 1.289 15 H -0.239 1.239 16 C 0.705 3.295 17 O -0.623 6.623 18 N -0.653 5.653 19 C 0.006 3.994 20 C 0.039 3.961 21 N -0.306 5.306 22 N -0.372 5.372 23 C 0.109 3.891 24 C 0.058 3.942 25 F -0.216 7.216 26 C 0.029 3.971 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.041 0.959 40 H 0.268 0.732 41 H 0.416 0.584 42 H 0.189 0.811 43 H 0.101 0.899 44 H 0.138 0.862 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 -9.243 2.491 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.155 4.155 5 C 0.013 3.987 6 N -0.343 5.343 7 C 0.098 3.902 8 C -0.581 4.581 9 H 0.044 0.956 10 C -0.178 4.178 11 N -0.581 5.581 12 Si 0.764 3.236 13 H -0.180 1.180 14 H -0.215 1.215 15 H -0.162 1.162 16 C 0.407 3.593 17 O -0.505 6.505 18 N -0.302 5.302 19 C -0.099 4.099 20 C -0.148 4.148 21 N -0.129 5.129 22 N -0.158 5.158 23 C -0.012 4.012 24 C 0.002 3.998 25 F -0.197 7.197 26 C -0.118 4.118 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.255 0.745 42 H 0.205 0.795 43 H 0.119 0.881 44 H 0.156 0.844 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -11.353 -10.879 1.633 15.808 hybrid contribution 0.620 1.607 1.003 1.993 sum -10.733 -9.272 2.635 14.426 Atomic orbital electron populations 1.21782 0.93989 1.01708 1.02294 1.21037 0.96638 0.96330 0.97060 1.21894 1.00859 0.95559 1.02261 1.21909 0.94311 1.00278 0.98973 1.21383 0.94508 0.96613 0.86229 1.47123 1.67135 1.03673 1.16328 1.19556 0.94409 0.92563 0.83652 1.21514 0.95074 1.35186 1.06297 0.95605 1.25806 0.95862 0.94851 1.01284 1.70067 1.14254 1.39194 1.34612 0.85810 0.80228 0.78443 0.79142 1.17987 1.21516 1.16246 1.15853 0.78292 0.82315 0.82820 1.90678 1.59780 1.65770 1.34264 1.41999 1.68169 1.04007 1.15989 1.17834 1.11967 0.83568 0.96552 1.24328 1.01035 0.88737 1.00687 1.77235 1.20774 1.21045 0.93810 1.48280 1.52264 1.05486 1.09734 1.22402 0.98215 0.83802 0.96758 1.22135 0.97792 0.83480 0.96403 1.92777 1.93423 1.55381 1.78150 1.22335 1.05217 0.83566 1.00707 0.92472 0.91496 0.93029 0.91435 0.92512 0.93334 0.91477 0.92994 0.91770 0.90483 0.91979 0.93256 0.94084 0.92285 0.74502 0.79450 0.88104 0.84370 0.89273 0.89949 0.76909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.19 71.98 0.66 -2.09 16 2 C -0.09 -2.16 2.92 -10.80 -0.03 -2.19 16 3 C -0.15 -3.32 8.95 71.98 0.64 -2.67 16 4 C -0.12 -3.36 5.01 30.59 0.15 -3.21 16 5 C 0.14 4.82 5.16 86.38 0.45 5.26 16 6 N -0.61 -24.31 2.46 -844.17 -2.07 -26.38 16 7 C 0.22 9.03 4.00 85.63 0.34 9.38 16 8 C -0.54 -27.90 9.94 25.60 0.25 -27.64 16 9 H 0.03 1.57 8.06 -2.91 -0.02 1.55 16 10 C 0.02 1.09 5.47 84.66 0.46 1.56 16 11 N -0.94 -54.42 13.96 21.45 0.30 -54.12 16 12 Si 0.94 37.59 27.47 68.60 1.88 39.47 16 13 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 14 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.24 -8.57 6.54 99.48 0.65 -7.91 16 16 C 0.71 29.02 8.25 179.05 1.48 30.50 16 17 O -0.62 -27.48 13.08 -4.04 -0.05 -27.53 16 18 N -0.65 -23.74 5.34 -317.70 -1.70 -25.44 16 19 C 0.01 0.20 6.90 37.59 0.26 0.46 16 20 C 0.04 1.36 10.84 85.33 0.92 2.29 16 21 N -0.31 -9.45 12.41 -56.78 -0.70 -10.16 16 22 N -0.37 -8.83 3.70 -346.98 -1.29 -10.12 16 23 C 0.11 1.63 6.97 86.38 0.60 2.23 16 24 C 0.06 0.87 7.74 71.98 0.56 1.43 16 25 F -0.22 -3.79 17.36 44.97 0.78 -3.01 16 26 C 0.03 0.73 11.52 83.49 0.96 1.69 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.20 6.57 -2.39 -0.02 1.19 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.08 2.76 6.49 -2.39 -0.02 2.74 16 37 H 0.06 2.33 7.42 -2.38 -0.02 2.32 16 38 H 0.05 1.94 7.13 -2.39 -0.02 1.92 16 39 H 0.04 1.53 5.78 -2.39 -0.01 1.52 16 40 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 41 H 0.42 14.30 6.55 -92.71 -0.61 13.69 16 42 H 0.19 7.26 5.91 -2.91 -0.02 7.24 16 43 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.14 1.22 8.07 -2.39 -0.02 1.20 16 45 H 0.09 1.22 8.14 -2.38 -0.02 1.21 16 46 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 47 H 0.21 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -68.09 387.31 5.18 -62.92 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: 0.31 Total: 37.38 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 7.72 Total: 16.98 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -5.46 Total: -126.21 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.01 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 1.88 Total: 39.47 kcal Total: -68.09 5.18 -62.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599861431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.678 kcal (2) G-P(sol) polarization free energy of solvation -68.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds