Wall clock time and date at job start Tue Mar 31 2020 14:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31815 * 119.12026 * 2 1 4 4 C 1.32314 * 120.81819 * 180.02562 * 3 2 1 5 5 C 1.38625 * 119.10378 * 0.02562 * 4 3 2 6 6 C 1.50691 * 120.80107 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.47540 * 134.92473 * 6 5 4 8 8 C 1.52999 * 109.47583 * 14.92000 * 6 5 4 9 9 N 1.46902 * 109.47298 * 254.92176 * 6 5 4 10 10 C 1.46900 * 110.99748 * 65.47108 * 9 6 5 11 11 C 1.50700 * 109.47157 * 203.17159 * 10 9 6 12 12 H 1.08005 * 120.00293 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00236 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99673 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00177 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47713 * 89.99867 * 15 13 11 17 17 H 1.48500 * 109.47277 * 210.00173 * 15 13 11 18 18 H 1.48503 * 109.47432 * 329.99512 * 15 13 11 19 19 C 1.46896 * 111.00532 * 189.42697 * 9 6 5 20 20 C 1.50702 * 109.47204 * 169.99903 * 19 9 6 21 21 C 1.38670 * 120.41523 * 90.00558 * 20 19 9 22 22 C 1.38628 * 118.41650 * 179.97438 * 21 20 19 23 23 C 1.38225 * 119.16255 * 0.24564 * 22 21 20 24 24 N 1.31849 * 120.76564 * 359.50080 * 23 22 21 25 25 C 1.31888 * 121.72340 * 0.49577 * 24 23 22 26 26 C 1.38579 * 118.39835 * 0.27255 * 5 4 3 27 27 C 1.50700 * 120.44912 * 179.72867 * 26 5 4 28 28 N 1.31783 * 119.12526 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46818 * 90.00135 * 1 2 3 30 30 H 1.09005 * 109.46969 * 209.99645 * 1 2 3 31 31 H 1.08996 * 109.47340 * 330.00276 * 1 2 3 32 32 H 1.07997 * 120.44988 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47872 * 179.97438 * 8 6 5 34 34 H 1.09006 * 109.47068 * 300.00761 * 8 6 5 35 35 H 1.09009 * 109.46774 * 59.99811 * 8 6 5 36 36 H 1.09000 * 109.47516 * 323.16831 * 10 9 6 37 37 H 1.08997 * 109.46995 * 83.17429 * 10 9 6 38 38 H 0.97003 * 119.99759 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.46860 * 49.99918 * 19 9 6 40 40 H 1.09002 * 109.47175 * 290.00276 * 19 9 6 41 41 H 1.07999 * 120.79175 * 359.97438 * 21 20 19 42 42 H 1.08007 * 120.41744 * 179.97438 * 22 21 20 43 43 H 1.08007 * 119.62076 * 179.75082 * 23 22 21 44 44 H 1.07999 * 119.61851 * 179.75390 * 25 24 23 45 45 H 1.08997 * 109.47125 * 90.00206 * 27 26 5 46 46 H 1.08998 * 109.47015 * 210.00454 * 27 26 5 47 47 H 1.09000 * 109.46876 * 330.00064 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4710 1.1907 -0.0005 5 6 4.1809 0.0000 -0.0016 6 6 5.6878 0.0000 -0.0016 7 1 6.0513 -0.7263 0.7254 8 6 6.1979 1.3935 0.3710 9 7 6.1775 -0.3590 -1.3393 10 6 5.8162 0.6681 -2.3254 11 6 5.8028 0.0587 -3.7036 12 1 6.0387 -0.9872 -3.8339 13 6 5.4894 0.8362 -4.7982 14 7 5.2016 2.1097 -4.6395 15 14 5.4721 0.0807 -6.5064 16 1 4.1146 -0.4438 -6.8022 17 1 5.8323 1.1153 -7.5090 18 1 6.4558 -1.0302 -6.5664 19 6 7.6285 -0.5877 -1.3249 20 6 8.0555 -1.1873 -2.6400 21 6 8.4318 -0.3698 -3.6950 22 6 8.8178 -0.9653 -4.8859 23 6 8.8098 -2.3441 -4.9830 24 7 8.4504 -3.0904 -3.9572 25 6 8.0777 -2.5585 -2.8094 26 6 3.4713 -1.1903 -0.0079 27 6 4.1962 -2.5115 -0.0155 28 7 2.1484 -1.1512 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 3.9905 2.1376 -0.0001 33 1 7.2879 1.3935 0.3714 34 1 5.8345 2.1199 -0.3560 35 1 5.8345 1.6600 1.3636 36 1 4.8270 1.0628 -2.0931 37 1 6.5468 1.4762 -2.2926 38 1 4.9815 2.6568 -5.4096 39 1 7.8804 -1.2720 -0.5148 40 1 8.1443 0.3605 -1.1733 41 1 8.4244 0.7052 -3.5914 42 1 9.1167 -0.3594 -5.7285 43 1 9.1052 -2.8157 -5.9087 44 1 7.7862 -3.2020 -1.9925 45 1 4.3713 -2.8357 1.0103 46 1 3.5905 -3.2552 -0.5332 47 1 5.1510 -2.3991 -0.5291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602436023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:21 Heat of formation + Delta-G solvation = 90.013907 kcal Electronic energy + Delta-G solvation = -28905.201005 eV Core-core repulsion = 25281.281332 eV Total energy + Delta-G solvation = -3623.919673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93164 -39.59199 -37.69027 -34.23788 -33.74862 -32.65796 -31.84459 -31.06035 -29.60205 -28.91795 -27.62450 -26.82811 -25.13944 -23.79160 -22.80760 -22.38540 -21.96180 -20.94867 -19.26866 -17.42053 -16.71413 -16.39960 -15.89169 -15.69392 -15.27533 -15.22307 -14.56932 -14.42511 -13.99790 -13.79044 -13.35450 -13.17437 -12.93641 -12.81053 -12.78390 -12.51528 -12.28309 -12.24139 -12.14734 -12.10724 -12.08535 -11.79951 -11.64748 -11.24421 -11.10591 -10.89577 -10.65565 -10.56335 -10.23313 -10.10604 -9.98963 -9.44634 -8.85457 -8.80899 -8.78302 -8.70695 -8.48740 -8.11366 -7.49368 -6.12659 -4.07194 1.27151 1.50739 1.84182 2.12663 3.25167 3.33194 3.38706 4.01401 4.26738 4.34956 4.46140 4.48460 4.89742 4.94022 4.99040 5.07955 5.20338 5.25379 5.38501 5.42427 5.53444 5.60083 5.63044 5.64766 5.69070 5.73062 5.79436 5.83205 5.90438 5.92262 5.96377 5.98919 6.08783 6.11625 6.26690 6.34947 6.41656 6.45892 6.49059 6.84957 6.90246 6.98841 7.05933 7.16086 7.42979 7.44022 7.70587 7.92671 7.99575 8.37798 8.50304 8.65497 8.96136 9.51837 10.96775 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012176 B = 0.005053 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.078376 B = 5540.059185 C = 6382.429235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.306 3.694 3 N -0.527 5.527 4 C 0.160 3.840 5 C -0.167 4.167 6 C 0.129 3.871 7 H 0.084 0.916 8 C -0.190 4.190 9 N -0.521 5.521 10 C 0.192 3.808 11 C -0.488 4.488 12 H 0.066 0.934 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.878 3.122 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.263 1.263 19 C 0.108 3.892 20 C -0.107 4.107 21 C 0.001 3.999 22 C -0.187 4.187 23 C 0.089 3.911 24 N -0.504 5.504 25 C 0.102 3.898 26 C 0.200 3.800 27 C -0.108 4.108 28 N -0.527 5.527 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.029 0.971 37 H -0.003 1.003 38 H 0.261 0.739 39 H 0.068 0.932 40 H 0.037 0.963 41 H 0.127 0.873 42 H 0.119 0.881 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 -3.618 9.900 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.039 3.961 3 N -0.241 5.241 4 C -0.005 4.005 5 C -0.171 4.171 6 C 0.020 3.980 7 H 0.102 0.898 8 C -0.248 4.248 9 N -0.245 5.245 10 C 0.067 3.933 11 C -0.526 4.526 12 H 0.084 0.916 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.705 3.295 16 H -0.210 1.210 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.020 4.020 20 C -0.110 4.110 21 C -0.026 4.026 22 C -0.207 4.207 23 C -0.068 4.068 24 N -0.213 5.213 25 C -0.054 4.054 26 C 0.053 3.947 27 C -0.165 4.165 28 N -0.242 5.242 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.181 0.819 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.015 0.985 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.068 -4.811 9.580 10.773 hybrid contribution 0.947 1.697 -1.086 2.226 sum 2.015 -3.114 8.494 9.269 Atomic orbital electron populations 1.20479 0.86386 1.03404 1.03598 1.23080 0.97844 0.83723 0.91499 1.68208 1.10075 1.30345 1.15499 1.23166 0.89274 0.98434 0.89641 1.21252 0.97832 0.94641 1.03397 1.20379 0.89021 0.95705 0.92927 0.89789 1.22569 1.01685 0.98974 1.01611 1.62449 1.10728 1.47796 1.03542 1.19817 0.95848 0.88032 0.89622 1.21248 1.44675 0.96481 0.90210 0.91566 1.24884 0.95577 0.94743 0.98963 1.69941 1.47042 1.05729 1.30565 0.86776 0.78862 0.79384 0.84433 1.20962 1.21376 1.18688 1.20808 0.89123 0.98413 0.93705 1.20382 0.99307 0.94479 0.96782 1.21224 0.89728 1.00081 0.91553 1.21854 1.04121 0.96079 0.98630 1.22393 0.96826 0.90969 0.96644 1.67554 1.12596 1.40809 1.00391 1.22289 0.96144 0.92311 0.94691 1.21477 0.88849 0.95868 0.88469 1.20841 1.01486 0.91799 1.02403 1.68062 1.09721 1.30480 1.15962 0.89963 0.90126 0.90086 0.81911 0.92055 0.91173 0.92638 0.95310 0.98536 0.92969 0.91349 0.94497 0.85513 0.86301 0.84388 0.84071 0.90875 0.90636 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.32 36.01 0.37 -0.66 16 2 C 0.31 5.30 7.64 -157.19 -1.20 4.10 16 3 N -0.53 -9.65 10.33 -10.72 -0.11 -9.76 16 4 C 0.16 2.82 9.24 -17.20 -0.16 2.67 16 5 C -0.17 -2.82 4.44 -104.36 -0.46 -3.28 16 6 C 0.13 1.94 1.72 -68.87 -0.12 1.83 16 7 H 0.08 1.08 7.49 -51.93 -0.39 0.69 16 8 C -0.19 -2.60 7.41 37.16 0.28 -2.33 16 9 N -0.52 -9.26 3.47 -230.92 -0.80 -10.06 16 10 C 0.19 4.31 3.07 -4.98 -0.02 4.29 16 11 C -0.49 -12.30 5.89 -34.44 -0.20 -12.50 16 12 H 0.07 1.74 6.13 -52.48 -0.32 1.42 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 15 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 16 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.26 -6.16 7.10 56.52 0.40 -5.76 16 19 C 0.11 1.69 4.66 -4.98 -0.02 1.66 16 20 C -0.11 -1.88 3.54 -104.48 -0.37 -2.25 16 21 C 0.00 0.01 6.65 -39.28 -0.26 -0.25 16 22 C -0.19 -3.36 10.11 -39.44 -0.40 -3.76 16 23 C 0.09 1.58 11.18 -17.55 -0.20 1.39 16 24 N -0.50 -9.36 10.36 -13.25 -0.14 -9.50 16 25 C 0.10 1.77 10.76 -17.55 -0.19 1.58 16 26 C 0.20 3.41 6.82 -82.24 -0.56 2.85 16 27 C -0.11 -1.52 9.61 36.01 0.35 -1.18 16 28 N -0.53 -9.41 10.27 -6.99 -0.07 -9.48 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.16 2.65 6.12 -52.49 -0.32 2.33 16 33 H 0.06 0.78 6.89 -51.93 -0.36 0.42 16 34 H 0.07 1.12 5.58 -51.93 -0.29 0.83 16 35 H 0.05 0.65 8.12 -51.92 -0.42 0.23 16 36 H 0.03 0.73 5.83 -51.93 -0.30 0.43 16 37 H 0.00 -0.07 7.33 -51.93 -0.38 -0.45 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.07 0.88 7.89 -51.93 -0.41 0.47 16 40 H 0.04 0.57 6.80 -51.93 -0.35 0.22 16 41 H 0.13 2.47 8.00 -52.49 -0.42 2.05 16 42 H 0.12 1.95 8.06 -52.48 -0.42 1.52 16 43 H 0.14 2.09 8.06 -52.48 -0.42 1.67 16 44 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.10 1.50 6.30 -51.93 -0.33 1.18 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -30.63 372.77 -9.86 -40.49 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.81 Total: 5.12 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -3.26 Total: -4.33 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.38 Total: -63.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.63 -9.86 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602436023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.504 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds