Wall clock time and date at job start Tue Mar 31 2020 14:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31815 * 119.12026 * 2 1 4 4 C 1.32314 * 120.81819 * 180.02562 * 3 2 1 5 5 C 1.38625 * 119.10378 * 0.02562 * 4 3 2 6 6 C 1.50691 * 120.80107 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.47540 * 134.92473 * 6 5 4 8 8 C 1.52999 * 109.47583 * 14.92000 * 6 5 4 9 9 N 1.46902 * 109.47298 * 254.92176 * 6 5 4 10 10 C 1.46900 * 110.99748 * 65.47108 * 9 6 5 11 11 C 1.50700 * 109.47157 * 203.17159 * 10 9 6 12 12 H 1.08005 * 120.00293 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00236 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99673 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00177 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47713 * 89.99867 * 15 13 11 17 17 H 1.48500 * 109.47277 * 210.00173 * 15 13 11 18 18 H 1.48503 * 109.47432 * 329.99512 * 15 13 11 19 19 C 1.46896 * 111.00532 * 189.42697 * 9 6 5 20 20 C 1.50702 * 109.47204 * 169.99903 * 19 9 6 21 21 C 1.38670 * 120.41523 * 90.00558 * 20 19 9 22 22 C 1.38628 * 118.41650 * 179.97438 * 21 20 19 23 23 C 1.38225 * 119.16255 * 0.24564 * 22 21 20 24 24 N 1.31849 * 120.76564 * 359.50080 * 23 22 21 25 25 C 1.31888 * 121.72340 * 0.49577 * 24 23 22 26 26 C 1.38579 * 118.39835 * 0.27255 * 5 4 3 27 27 C 1.50700 * 120.44912 * 179.72867 * 26 5 4 28 28 N 1.31783 * 119.12526 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46818 * 90.00135 * 1 2 3 30 30 H 1.09005 * 109.46969 * 209.99645 * 1 2 3 31 31 H 1.08996 * 109.47340 * 330.00276 * 1 2 3 32 32 H 1.07997 * 120.44988 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47872 * 179.97438 * 8 6 5 34 34 H 1.09006 * 109.47068 * 300.00761 * 8 6 5 35 35 H 1.09009 * 109.46774 * 59.99811 * 8 6 5 36 36 H 1.09000 * 109.47516 * 323.16831 * 10 9 6 37 37 H 1.08997 * 109.46995 * 83.17429 * 10 9 6 38 38 H 0.97003 * 119.99759 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.46860 * 49.99918 * 19 9 6 40 40 H 1.09002 * 109.47175 * 290.00276 * 19 9 6 41 41 H 1.07999 * 120.79175 * 359.97438 * 21 20 19 42 42 H 1.08007 * 120.41744 * 179.97438 * 22 21 20 43 43 H 1.08007 * 119.62076 * 179.75082 * 23 22 21 44 44 H 1.07999 * 119.61851 * 179.75390 * 25 24 23 45 45 H 1.08997 * 109.47125 * 90.00206 * 27 26 5 46 46 H 1.08998 * 109.47015 * 210.00454 * 27 26 5 47 47 H 1.09000 * 109.46876 * 330.00064 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4710 1.1907 -0.0005 5 6 4.1809 0.0000 -0.0016 6 6 5.6878 0.0000 -0.0016 7 1 6.0513 -0.7263 0.7254 8 6 6.1979 1.3935 0.3710 9 7 6.1775 -0.3590 -1.3393 10 6 5.8162 0.6681 -2.3254 11 6 5.8028 0.0587 -3.7036 12 1 6.0387 -0.9872 -3.8339 13 6 5.4894 0.8362 -4.7982 14 7 5.2016 2.1097 -4.6395 15 14 5.4721 0.0807 -6.5064 16 1 4.1146 -0.4438 -6.8022 17 1 5.8323 1.1153 -7.5090 18 1 6.4558 -1.0302 -6.5664 19 6 7.6285 -0.5877 -1.3249 20 6 8.0555 -1.1873 -2.6400 21 6 8.4318 -0.3698 -3.6950 22 6 8.8178 -0.9653 -4.8859 23 6 8.8098 -2.3441 -4.9830 24 7 8.4504 -3.0904 -3.9572 25 6 8.0777 -2.5585 -2.8094 26 6 3.4713 -1.1903 -0.0079 27 6 4.1962 -2.5115 -0.0155 28 7 2.1484 -1.1512 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 3.9905 2.1376 -0.0001 33 1 7.2879 1.3935 0.3714 34 1 5.8345 2.1199 -0.3560 35 1 5.8345 1.6600 1.3636 36 1 4.8270 1.0628 -2.0931 37 1 6.5468 1.4762 -2.2926 38 1 4.9815 2.6568 -5.4096 39 1 7.8804 -1.2720 -0.5148 40 1 8.1443 0.3605 -1.1733 41 1 8.4244 0.7052 -3.5914 42 1 9.1167 -0.3594 -5.7285 43 1 9.1052 -2.8157 -5.9087 44 1 7.7862 -3.2020 -1.9925 45 1 4.3713 -2.8357 1.0103 46 1 3.5905 -3.2552 -0.5332 47 1 5.1510 -2.3991 -0.5291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602436023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:20 Heat of formation + Delta-G solvation = 71.911293 kcal Electronic energy + Delta-G solvation = -28905.985993 eV Core-core repulsion = 25281.281332 eV Total energy + Delta-G solvation = -3624.704661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21791 -40.97171 -39.05312 -35.57752 -35.11827 -34.49458 -33.17007 -32.40578 -31.00053 -30.06374 -29.25796 -28.07252 -26.49266 -25.34264 -24.21145 -23.91407 -23.22394 -22.26940 -20.65287 -18.81866 -18.49145 -17.76423 -17.17659 -17.08441 -16.71347 -16.66998 -16.26518 -15.82268 -15.32825 -15.17633 -14.72319 -14.46770 -14.23937 -14.06829 -14.01571 -13.95492 -13.82389 -13.69479 -13.41406 -13.21387 -13.16155 -13.07908 -13.01943 -12.86704 -12.60398 -12.49274 -12.23029 -12.20227 -11.71083 -11.50416 -11.37979 -11.29103 -10.62752 -10.21531 -10.18469 -10.13402 -9.98796 -9.54098 -8.95425 -8.16169 -6.14044 -0.02446 0.19017 0.47461 0.70529 1.29846 1.35649 1.43900 2.37886 2.71977 3.07391 3.10012 3.21149 3.23586 3.55770 3.68888 3.76902 3.79068 3.97537 4.09996 4.20744 4.27317 4.34304 4.42438 4.45910 4.47434 4.60001 4.66839 4.69526 4.74394 4.77683 4.84102 4.84800 4.93404 5.00594 5.01635 5.09983 5.13895 5.21125 5.29871 5.31169 5.40230 5.50309 5.63891 5.67587 5.75119 6.06911 6.12206 6.15261 6.41488 6.63776 6.96047 7.19767 7.27638 7.48341 8.92693 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012176 B = 0.005053 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.078376 B = 5540.059185 C = 6382.429235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.290 3.710 3 N -0.549 5.549 4 C 0.144 3.856 5 C -0.175 4.175 6 C 0.132 3.868 7 H 0.120 0.880 8 C -0.183 4.183 9 N -0.524 5.524 10 C 0.215 3.785 11 C -0.473 4.473 12 H 0.058 0.942 13 C 0.016 3.984 14 N -0.928 5.928 15 Si 0.919 3.081 16 H -0.296 1.296 17 H -0.287 1.287 18 H -0.250 1.250 19 C 0.107 3.893 20 C -0.112 4.112 21 C -0.017 4.017 22 C -0.195 4.195 23 C 0.080 3.920 24 N -0.517 5.517 25 C 0.100 3.900 26 C 0.186 3.814 27 C -0.102 4.102 28 N -0.542 5.542 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.166 0.834 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.076 0.924 36 H -0.001 1.001 37 H -0.023 1.023 38 H 0.257 0.743 39 H 0.110 0.890 40 H 0.038 0.962 41 H 0.109 0.891 42 H 0.129 0.871 43 H 0.162 0.838 44 H 0.170 0.830 45 H 0.105 0.895 46 H 0.071 0.929 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 -5.648 11.286 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.023 3.977 3 N -0.265 5.265 4 C -0.020 4.020 5 C -0.179 4.179 6 C 0.023 3.977 7 H 0.138 0.862 8 C -0.241 4.241 9 N -0.247 5.247 10 C 0.089 3.911 11 C -0.512 4.512 12 H 0.076 0.924 13 C -0.181 4.181 14 N -0.570 5.570 15 Si 0.746 3.254 16 H -0.223 1.223 17 H -0.213 1.213 18 H -0.173 1.173 19 C -0.020 4.020 20 C -0.114 4.114 21 C -0.044 4.044 22 C -0.215 4.215 23 C -0.077 4.077 24 N -0.227 5.227 25 C -0.056 4.056 26 C 0.040 3.960 27 C -0.159 4.159 28 N -0.258 5.258 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.183 0.817 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.017 0.983 37 H -0.006 1.006 38 H 0.066 0.934 39 H 0.128 0.872 40 H 0.057 0.943 41 H 0.127 0.873 42 H 0.147 0.853 43 H 0.180 0.820 44 H 0.187 0.813 45 H 0.123 0.877 46 H 0.090 0.910 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.892 -6.858 10.972 13.076 hybrid contribution 0.729 2.274 -1.467 2.803 sum 2.622 -4.584 9.505 10.873 Atomic orbital electron populations 1.20601 0.83794 1.04967 1.04175 1.23859 0.99603 0.83441 0.90811 1.68242 1.10570 1.31126 1.16521 1.23378 0.89522 0.99230 0.89913 1.21451 0.98873 0.94270 1.03340 1.20517 0.87867 0.97356 0.91932 0.86206 1.22488 1.02350 0.97409 1.01881 1.62277 1.12340 1.45872 1.04227 1.19330 0.93635 0.88289 0.89848 1.21399 1.42633 0.95705 0.91445 0.92411 1.25420 0.96185 0.95017 1.01522 1.70037 1.49330 1.06785 1.30847 0.86126 0.78198 0.79100 0.81946 1.22344 1.21266 1.17346 1.20940 0.87507 0.99431 0.94125 1.20604 0.98863 0.94690 0.97234 1.21255 0.90973 0.99506 0.92677 1.22065 1.03955 0.96653 0.98796 1.22798 0.96525 0.90874 0.97502 1.67615 1.12841 1.41239 1.00957 1.22744 0.95256 0.92533 0.95101 1.22075 0.88991 0.97204 0.87718 1.20886 1.00652 0.90046 1.04320 1.68159 1.10289 1.30637 1.16672 0.89687 0.88342 0.88757 0.81684 0.90768 0.94128 0.90490 0.98319 1.00567 0.93443 0.87209 0.94342 0.87264 0.85303 0.82042 0.81342 0.87677 0.91014 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 10.32 71.24 0.74 -1.19 16 2 C 0.29 9.95 7.64 138.75 1.06 11.01 16 3 N -0.55 -20.32 10.33 -187.83 -1.94 -22.27 16 4 C 0.14 5.13 9.24 84.71 0.78 5.91 16 5 C -0.17 -5.72 4.44 -19.69 -0.09 -5.81 16 6 C 0.13 3.67 1.72 44.17 0.08 3.74 16 7 H 0.12 2.52 7.49 -2.38 -0.02 2.50 16 8 C -0.18 -4.72 7.41 71.98 0.53 -4.19 16 9 N -0.52 -17.68 3.47 -884.48 -3.07 -20.75 16 10 C 0.22 9.74 3.07 85.56 0.26 10.00 16 11 C -0.47 -23.94 5.89 25.60 0.15 -23.79 16 12 H 0.06 3.00 6.13 -2.91 -0.02 2.98 16 13 C 0.02 0.89 5.46 84.66 0.46 1.35 16 14 N -0.93 -53.45 13.29 21.45 0.28 -53.16 16 15 Si 0.92 43.80 29.54 68.60 2.03 45.82 16 16 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 17 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 18 H -0.25 -11.25 7.10 99.48 0.71 -10.54 16 19 C 0.11 3.08 4.66 85.56 0.40 3.47 16 20 C -0.11 -3.70 3.54 -19.77 -0.07 -3.77 16 21 C -0.02 -0.64 6.65 22.47 0.15 -0.49 16 22 C -0.19 -6.80 10.11 22.36 0.23 -6.57 16 23 C 0.08 2.68 11.18 84.69 0.95 3.63 16 24 N -0.52 -17.95 10.36 -195.84 -2.03 -19.98 16 25 C 0.10 3.19 10.76 84.67 0.91 4.10 16 26 C 0.19 6.08 6.82 42.56 0.29 6.38 16 27 C -0.10 -2.58 9.61 71.24 0.68 -1.89 16 28 N -0.54 -18.85 10.27 -176.02 -1.81 -20.66 16 29 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.17 5.56 6.12 -2.91 -0.02 5.54 16 33 H 0.07 1.72 6.89 -2.39 -0.02 1.70 16 34 H 0.04 1.29 5.58 -2.38 -0.01 1.28 16 35 H 0.08 1.65 8.12 -2.38 -0.02 1.63 16 36 H 0.00 -0.06 5.83 -2.39 -0.01 -0.08 16 37 H -0.02 -1.15 7.33 -2.39 -0.02 -1.16 16 38 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 39 H 0.11 2.27 7.89 -2.39 -0.02 2.26 16 40 H 0.04 1.11 6.80 -2.39 -0.02 1.10 16 41 H 0.11 4.35 8.00 -2.91 -0.02 4.33 16 42 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 44 H 0.17 4.34 8.06 -2.91 -0.02 4.31 16 45 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.10 2.59 6.30 -2.39 -0.02 2.58 16 Total: -1.00 -67.28 372.77 1.95 -65.33 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.98 Total: 23.76 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 7.51 Total: 1.90 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -8.56 Total: -136.82 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -67.28 1.95 -65.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602436023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.245 kcal (2) G-P(sol) polarization free energy of solvation -67.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds