Wall clock time and date at job start Tue Mar 31 2020 14:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31807 * 119.12319 * 2 1 4 4 C 1.32319 * 120.81605 * 179.72773 * 3 2 1 5 5 C 1.38623 * 119.10577 * 0.56551 * 4 3 2 6 6 C 1.50700 * 120.80258 * 179.71886 * 5 4 3 7 7 H 1.09004 * 109.47153 * 147.64635 * 6 5 4 8 8 C 1.53001 * 109.47166 * 267.64332 * 6 5 4 9 9 N 1.46896 * 109.46892 * 27.64552 * 6 5 4 10 10 C 1.46904 * 110.99800 * 186.67131 * 9 6 5 11 11 C 1.50696 * 109.47311 * 75.51799 * 10 9 6 12 12 H 1.08005 * 120.00220 * 5.15109 * 11 10 9 13 13 C 1.37873 * 120.00119 * 185.15241 * 11 10 9 14 14 N 1.31520 * 120.00414 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00143 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.47165 * 89.99909 * 15 13 11 17 17 H 1.48499 * 109.47260 * 210.00483 * 15 13 11 18 18 H 1.48502 * 109.46964 * 330.00290 * 15 13 11 19 19 C 1.46900 * 111.00280 * 62.71789 * 9 6 5 20 20 C 1.50699 * 109.47051 * 189.99824 * 19 9 6 21 21 C 1.38671 * 120.42007 * 270.25722 * 20 19 9 22 22 C 1.38627 * 118.42252 * 180.22300 * 21 20 19 23 23 C 1.38226 * 119.15751 * 359.48112 * 22 21 20 24 24 N 1.31854 * 120.76705 * 0.29729 * 23 22 21 25 25 C 1.31881 * 121.72374 * 359.97438 * 24 23 22 26 26 C 1.38582 * 118.39612 * 359.44753 * 5 4 3 27 27 C 1.50697 * 120.44679 * 180.29459 * 26 5 4 28 28 N 1.31780 * 119.12129 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47310 * 269.97511 * 1 2 3 30 30 H 1.08998 * 109.46962 * 29.98157 * 1 2 3 31 31 H 1.09000 * 109.46980 * 149.97840 * 1 2 3 32 32 H 1.08005 * 120.44682 * 180.30817 * 4 3 2 33 33 H 1.09000 * 109.47493 * 187.13811 * 8 6 5 34 34 H 1.08999 * 109.47383 * 307.14213 * 8 6 5 35 35 H 1.09006 * 109.46579 * 67.13789 * 8 6 5 36 36 H 1.09001 * 109.46993 * 195.52245 * 10 9 6 37 37 H 1.08996 * 109.46948 * 315.51841 * 10 9 6 38 38 H 0.96995 * 120.00723 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.47305 * 69.99770 * 19 9 6 40 40 H 1.09004 * 109.47036 * 309.99734 * 19 9 6 41 41 H 1.08004 * 120.78717 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.42128 * 179.75425 * 22 21 20 43 43 H 1.08010 * 119.61446 * 180.27830 * 23 22 21 44 44 H 1.08001 * 119.61569 * 179.97438 * 25 24 23 45 45 H 1.08996 * 109.47330 * 89.99725 * 27 26 5 46 46 H 1.09001 * 109.47046 * 210.00582 * 27 26 5 47 47 H 1.09004 * 109.46787 * 329.99777 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1905 0.0054 5 6 4.1809 -0.0002 -0.0009 6 6 5.6879 -0.0002 -0.0014 7 1 6.0514 -0.8711 0.5441 8 6 6.1974 -0.0523 -1.4431 9 7 6.1778 1.2234 0.6472 10 6 7.6375 1.3353 0.5258 11 6 7.9942 1.7541 -0.8772 12 1 7.2139 2.0011 -1.5819 13 6 9.3167 1.8220 -1.2612 14 7 9.6281 2.1880 -2.4855 15 14 10.6663 1.3955 -0.0422 16 1 10.9731 -0.0547 -0.1307 17 1 11.8865 2.1799 -0.3601 18 1 10.2122 1.7223 1.3334 19 6 5.7611 1.2761 2.0549 20 6 6.0641 2.6408 2.6177 21 6 7.2909 2.8994 3.2101 22 6 7.5239 4.1680 3.7184 23 6 6.5366 5.1291 3.6088 24 7 5.3831 4.8489 3.0347 25 6 5.1249 3.6518 2.5451 26 6 3.4713 -1.1905 -0.0008 27 6 4.1961 -2.5117 -0.0008 28 7 2.1483 -1.1512 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 3.9906 2.1374 0.0104 33 1 7.2799 -0.1800 -1.4416 34 1 5.7333 -0.8907 -1.9625 35 1 5.9419 0.8770 -1.9525 36 1 8.0048 2.0801 1.2318 37 1 8.0953 0.3706 0.7444 38 1 10.5584 2.2361 -2.7555 39 1 6.3034 0.5202 2.6229 40 1 4.6904 1.0839 2.1243 41 1 8.0455 2.1297 3.2776 42 1 8.4664 4.4035 4.1900 43 1 6.7119 6.1212 3.9982 44 1 4.1683 3.4595 2.0822 45 1 4.3709 -2.8302 1.0268 46 1 3.5906 -3.2583 -0.5147 47 1 5.1511 -2.4021 -0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602436024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:24 Heat of formation + Delta-G solvation = 95.773714 kcal Electronic energy + Delta-G solvation = -28414.424654 eV Core-core repulsion = 24790.754745 eV Total energy + Delta-G solvation = -3623.669909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12908 -39.97486 -37.79907 -34.61427 -33.58349 -33.02661 -32.08718 -31.55214 -29.93045 -28.90698 -28.59249 -26.96461 -25.03176 -23.56680 -23.34928 -22.50023 -21.76770 -21.10555 -19.71138 -17.67763 -16.97180 -16.82089 -16.15411 -15.95851 -15.51074 -15.19757 -15.00946 -14.63843 -14.06849 -13.76044 -13.47531 -13.41052 -13.29236 -13.03699 -12.90193 -12.87121 -12.61040 -12.57455 -12.40807 -12.32196 -12.23054 -11.98114 -11.63277 -11.35315 -11.11236 -11.02997 -10.70280 -10.58663 -10.30143 -10.16673 -9.90791 -9.51519 -9.27766 -9.12545 -9.00132 -8.85179 -8.70246 -8.59821 -7.67865 -6.12254 -4.05993 1.08195 1.28586 1.34851 1.52909 3.17609 3.25335 3.28017 3.86706 3.97255 4.03102 4.28081 4.32446 4.51926 4.66392 4.75092 4.96520 4.99058 5.08349 5.17458 5.18746 5.25350 5.26794 5.38402 5.47353 5.52103 5.53852 5.54462 5.58622 5.66298 5.76217 5.85021 5.91118 5.96357 5.98714 6.01138 6.24191 6.32814 6.35769 6.49817 6.59841 6.67174 6.68838 6.87437 6.92977 7.20968 7.30959 7.50532 7.66928 7.80309 8.20297 8.30294 8.53847 8.97619 9.47388 10.99696 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.005272 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.959345 B = 5310.112291 C = 7337.668644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.301 3.699 3 N -0.525 5.525 4 C 0.172 3.828 5 C -0.176 4.176 6 C 0.141 3.859 7 H 0.045 0.955 8 C -0.131 4.131 9 N -0.517 5.517 10 C 0.157 3.843 11 C -0.503 4.503 12 H 0.091 0.909 13 C 0.069 3.931 14 N -0.896 5.896 15 Si 0.866 3.134 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.270 1.270 19 C 0.091 3.909 20 C -0.113 4.113 21 C -0.062 4.062 22 C -0.174 4.174 23 C 0.091 3.909 24 N -0.487 5.487 25 C 0.116 3.884 26 C 0.172 3.828 27 C -0.109 4.109 28 N -0.524 5.524 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.179 0.821 33 H 0.097 0.903 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.035 0.965 37 H -0.012 1.012 38 H 0.264 0.736 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.846 -4.967 9.880 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.033 3.967 3 N -0.240 5.240 4 C 0.007 3.993 5 C -0.181 4.181 6 C 0.031 3.969 7 H 0.063 0.937 8 C -0.188 4.188 9 N -0.241 5.241 10 C 0.032 3.968 11 C -0.541 4.541 12 H 0.109 0.891 13 C -0.133 4.133 14 N -0.535 5.535 15 Si 0.694 3.306 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.195 1.195 19 C -0.038 4.038 20 C -0.116 4.116 21 C -0.089 4.089 22 C -0.194 4.194 23 C -0.066 4.066 24 N -0.196 5.196 25 C -0.041 4.041 26 C 0.026 3.974 27 C -0.167 4.167 28 N -0.240 5.240 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.196 0.804 33 H 0.116 0.884 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.006 0.994 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.168 0.832 44 H 0.168 0.832 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.529 -3.886 9.437 15.397 hybrid contribution 3.011 -1.456 1.023 3.497 sum -8.518 -5.343 10.460 14.509 Atomic orbital electron populations 1.20480 0.86258 1.03748 1.03395 1.23129 0.97911 0.83729 0.91917 1.68327 1.10338 1.30116 1.15188 1.23337 0.88378 0.99342 0.88225 1.21667 0.98889 0.94648 1.02889 1.20327 0.87237 0.91390 0.97939 0.93722 1.22213 1.03785 1.00857 0.91963 1.62061 1.16089 1.35609 1.10372 1.20352 0.81760 0.95181 0.99550 1.21170 0.93263 1.44381 0.95283 0.89088 1.24853 0.98189 0.95380 0.94856 1.69867 1.18291 1.48100 1.17251 0.87004 0.82588 0.78662 0.82333 1.20392 1.21215 1.19491 1.20986 1.00345 0.92041 0.90425 1.20700 0.94971 0.97459 0.98422 1.21504 0.95909 0.97118 0.94359 1.22055 1.00779 0.94431 1.02164 1.22649 0.89105 0.99137 0.95748 1.67661 1.21456 1.21082 1.09373 1.22534 0.99042 0.87630 0.94919 1.21496 0.89324 0.95635 0.90985 1.20823 1.00207 0.92278 1.03343 1.68043 1.09330 1.30684 1.15894 0.90125 0.89856 0.90095 0.80409 0.88419 0.95111 0.91012 0.94672 0.99426 0.92642 0.94515 0.90895 0.85305 0.85209 0.83229 0.83172 0.90107 0.90205 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.32 36.01 0.37 -0.47 16 2 C 0.30 4.37 7.64 -157.20 -1.20 3.17 16 3 N -0.53 -8.27 10.33 -10.72 -0.11 -8.38 16 4 C 0.17 2.75 9.26 -17.20 -0.16 2.59 16 5 C -0.18 -2.72 4.10 -104.35 -0.43 -3.15 16 6 C 0.14 2.31 1.54 -68.87 -0.11 2.21 16 7 H 0.05 0.70 6.94 -51.93 -0.36 0.33 16 8 C -0.13 -2.41 7.46 37.16 0.28 -2.13 16 9 N -0.52 -9.24 3.45 -230.91 -0.80 -10.04 16 10 C 0.16 3.33 3.39 -4.98 -0.02 3.31 16 11 C -0.50 -12.65 6.79 -34.44 -0.23 -12.89 16 12 H 0.09 2.51 5.95 -52.48 -0.31 2.20 16 13 C 0.07 1.83 5.47 -17.82 -0.10 1.73 16 14 N -0.90 -25.76 13.96 55.43 0.77 -24.99 16 15 Si 0.87 20.00 27.37 -169.99 -4.65 15.34 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -5.91 6.69 56.52 0.38 -5.54 16 19 C 0.09 1.39 4.71 -4.98 -0.02 1.37 16 20 C -0.11 -1.79 4.97 -104.48 -0.52 -2.31 16 21 C -0.06 -0.96 8.02 -39.28 -0.31 -1.27 16 22 C -0.17 -2.41 10.11 -39.44 -0.40 -2.81 16 23 C 0.09 1.28 11.18 -17.55 -0.20 1.09 16 24 N -0.49 -7.87 10.36 -13.25 -0.14 -8.01 16 25 C 0.12 1.83 10.86 -17.55 -0.19 1.64 16 26 C 0.17 2.49 6.82 -82.24 -0.56 1.93 16 27 C -0.11 -1.25 9.47 36.00 0.34 -0.91 16 28 N -0.52 -7.84 10.27 -6.99 -0.07 -7.91 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.18 2.92 7.39 -52.48 -0.39 2.53 16 33 H 0.10 2.05 5.94 -51.93 -0.31 1.74 16 34 H 0.03 0.49 7.43 -51.93 -0.39 0.11 16 35 H 0.07 1.49 6.55 -51.93 -0.34 1.15 16 36 H 0.04 0.77 4.38 -51.93 -0.23 0.54 16 37 H -0.01 -0.25 7.15 -51.93 -0.37 -0.62 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.07 1.06 6.00 -51.93 -0.31 0.75 16 41 H 0.13 1.91 7.65 -52.48 -0.40 1.50 16 42 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 44 H 0.15 2.19 8.06 -52.49 -0.42 1.76 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.09 0.97 5.99 -51.93 -0.31 0.66 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -29.84 371.40 -9.53 -39.38 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.68 Total: 5.92 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.46 Total: -6.90 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.34 Total: -59.33 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.65 Total: 15.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.84 -9.53 -39.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602436024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.150 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds