Wall clock time and date at job start Tue Mar 31 2020 14:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31807 * 119.12319 * 2 1 4 4 C 1.32319 * 120.81605 * 179.72773 * 3 2 1 5 5 C 1.38623 * 119.10577 * 0.56551 * 4 3 2 6 6 C 1.50700 * 120.80258 * 179.71886 * 5 4 3 7 7 H 1.09004 * 109.47153 * 147.64635 * 6 5 4 8 8 C 1.53001 * 109.47166 * 267.64332 * 6 5 4 9 9 N 1.46896 * 109.46892 * 27.64552 * 6 5 4 10 10 C 1.46904 * 110.99800 * 186.67131 * 9 6 5 11 11 C 1.50696 * 109.47311 * 75.51799 * 10 9 6 12 12 H 1.08005 * 120.00220 * 5.15109 * 11 10 9 13 13 C 1.37873 * 120.00119 * 185.15241 * 11 10 9 14 14 N 1.31520 * 120.00414 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00143 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.47165 * 89.99909 * 15 13 11 17 17 H 1.48499 * 109.47260 * 210.00483 * 15 13 11 18 18 H 1.48502 * 109.46964 * 330.00290 * 15 13 11 19 19 C 1.46900 * 111.00280 * 62.71789 * 9 6 5 20 20 C 1.50699 * 109.47051 * 189.99824 * 19 9 6 21 21 C 1.38671 * 120.42007 * 270.25722 * 20 19 9 22 22 C 1.38627 * 118.42252 * 180.22300 * 21 20 19 23 23 C 1.38226 * 119.15751 * 359.48112 * 22 21 20 24 24 N 1.31854 * 120.76705 * 0.29729 * 23 22 21 25 25 C 1.31881 * 121.72374 * 359.97438 * 24 23 22 26 26 C 1.38582 * 118.39612 * 359.44753 * 5 4 3 27 27 C 1.50697 * 120.44679 * 180.29459 * 26 5 4 28 28 N 1.31780 * 119.12129 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47310 * 269.97511 * 1 2 3 30 30 H 1.08998 * 109.46962 * 29.98157 * 1 2 3 31 31 H 1.09000 * 109.46980 * 149.97840 * 1 2 3 32 32 H 1.08005 * 120.44682 * 180.30817 * 4 3 2 33 33 H 1.09000 * 109.47493 * 187.13811 * 8 6 5 34 34 H 1.08999 * 109.47383 * 307.14213 * 8 6 5 35 35 H 1.09006 * 109.46579 * 67.13789 * 8 6 5 36 36 H 1.09001 * 109.46993 * 195.52245 * 10 9 6 37 37 H 1.08996 * 109.46948 * 315.51841 * 10 9 6 38 38 H 0.96995 * 120.00723 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.47305 * 69.99770 * 19 9 6 40 40 H 1.09004 * 109.47036 * 309.99734 * 19 9 6 41 41 H 1.08004 * 120.78717 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.42128 * 179.75425 * 22 21 20 43 43 H 1.08010 * 119.61446 * 180.27830 * 23 22 21 44 44 H 1.08001 * 119.61569 * 179.97438 * 25 24 23 45 45 H 1.08996 * 109.47330 * 89.99725 * 27 26 5 46 46 H 1.09001 * 109.47046 * 210.00582 * 27 26 5 47 47 H 1.09004 * 109.46787 * 329.99777 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1905 0.0054 5 6 4.1809 -0.0002 -0.0009 6 6 5.6879 -0.0002 -0.0014 7 1 6.0514 -0.8711 0.5441 8 6 6.1974 -0.0523 -1.4431 9 7 6.1778 1.2234 0.6472 10 6 7.6375 1.3353 0.5258 11 6 7.9942 1.7541 -0.8772 12 1 7.2139 2.0011 -1.5819 13 6 9.3167 1.8220 -1.2612 14 7 9.6281 2.1880 -2.4855 15 14 10.6663 1.3955 -0.0422 16 1 10.9731 -0.0547 -0.1307 17 1 11.8865 2.1799 -0.3601 18 1 10.2122 1.7223 1.3334 19 6 5.7611 1.2761 2.0549 20 6 6.0641 2.6408 2.6177 21 6 7.2909 2.8994 3.2101 22 6 7.5239 4.1680 3.7184 23 6 6.5366 5.1291 3.6088 24 7 5.3831 4.8489 3.0347 25 6 5.1249 3.6518 2.5451 26 6 3.4713 -1.1905 -0.0008 27 6 4.1961 -2.5117 -0.0008 28 7 2.1483 -1.1512 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 3.9906 2.1374 0.0104 33 1 7.2799 -0.1800 -1.4416 34 1 5.7333 -0.8907 -1.9625 35 1 5.9419 0.8770 -1.9525 36 1 8.0048 2.0801 1.2318 37 1 8.0953 0.3706 0.7444 38 1 10.5584 2.2361 -2.7555 39 1 6.3034 0.5202 2.6229 40 1 4.6904 1.0839 2.1243 41 1 8.0455 2.1297 3.2776 42 1 8.4664 4.4035 4.1900 43 1 6.7119 6.1212 3.9982 44 1 4.1683 3.4595 2.0822 45 1 4.3709 -2.8302 1.0268 46 1 3.5906 -3.2583 -0.5147 47 1 5.1511 -2.4021 -0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602436024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:23 Heat of formation + Delta-G solvation = 77.874767 kcal Electronic energy + Delta-G solvation = -28415.200811 eV Core-core repulsion = 24790.754745 eV Total energy + Delta-G solvation = -3624.446066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.30176 -41.13433 -39.16981 -35.76614 -34.88693 -34.69120 -33.43067 -32.74548 -31.19585 -30.19478 -29.88863 -28.26122 -26.39192 -24.74471 -24.63145 -23.89019 -23.01269 -22.38616 -21.11048 -19.07984 -18.64750 -17.98377 -17.35771 -17.19649 -16.67483 -16.45754 -16.34650 -16.14073 -15.49627 -15.11741 -14.71970 -14.63805 -14.43827 -14.25901 -14.15357 -14.02486 -13.92783 -13.87469 -13.62315 -13.33824 -13.24179 -13.12959 -13.03002 -12.83105 -12.64133 -12.52402 -12.29496 -12.05734 -11.78867 -11.47082 -11.39884 -11.09872 -10.72911 -10.57251 -10.39084 -10.19869 -10.02376 -9.87063 -9.09270 -8.16460 -6.12969 -0.07429 0.10316 0.21108 0.37152 1.36069 1.38600 1.46638 2.39858 2.70588 2.77861 3.01044 3.14296 3.16534 3.25676 3.55553 3.63313 3.74602 3.84852 3.89890 4.05422 4.11737 4.13165 4.27615 4.38114 4.42891 4.51840 4.55762 4.64566 4.67140 4.69398 4.75399 4.75683 4.85831 4.87605 4.89818 4.94858 5.07456 5.10865 5.15244 5.20379 5.29940 5.35641 5.55325 5.63740 5.71244 5.81621 5.96371 6.10751 6.32075 6.64827 6.90655 7.06095 7.15082 7.43621 8.98784 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.005272 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.959345 B = 5310.112291 C = 7337.668644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.294 3.706 3 N -0.542 5.542 4 C 0.167 3.833 5 C -0.185 4.185 6 C 0.149 3.851 7 H 0.064 0.936 8 C -0.119 4.119 9 N -0.529 5.529 10 C 0.168 3.832 11 C -0.489 4.489 12 H 0.053 0.947 13 C 0.010 3.990 14 N -0.949 5.949 15 Si 0.927 3.073 16 H -0.270 1.270 17 H -0.294 1.294 18 H -0.245 1.245 19 C 0.099 3.901 20 C -0.126 4.126 21 C -0.077 4.077 22 C -0.172 4.172 23 C 0.085 3.915 24 N -0.510 5.510 25 C 0.103 3.897 26 C 0.174 3.826 27 C -0.108 4.108 28 N -0.532 5.532 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.165 0.835 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.037 0.963 37 H -0.005 1.005 38 H 0.261 0.739 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.136 0.864 42 H 0.160 0.840 43 H 0.181 0.819 44 H 0.152 0.848 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.232 -6.286 12.392 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.027 3.973 3 N -0.257 5.257 4 C 0.002 3.998 5 C -0.190 4.190 6 C 0.040 3.960 7 H 0.081 0.919 8 C -0.176 4.176 9 N -0.253 5.253 10 C 0.041 3.959 11 C -0.527 4.527 12 H 0.071 0.929 13 C -0.187 4.187 14 N -0.591 5.591 15 Si 0.752 3.248 16 H -0.195 1.195 17 H -0.220 1.220 18 H -0.169 1.169 19 C -0.029 4.029 20 C -0.128 4.128 21 C -0.104 4.104 22 C -0.191 4.191 23 C -0.072 4.072 24 N -0.219 5.219 25 C -0.054 4.054 26 C 0.028 3.972 27 C -0.165 4.165 28 N -0.247 5.247 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.182 0.818 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.013 0.987 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.154 0.846 42 H 0.178 0.822 43 H 0.198 0.802 44 H 0.169 0.831 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.948 -5.214 11.975 17.702 hybrid contribution 2.989 -1.003 0.210 3.160 sum -8.960 -6.217 12.185 16.353 Atomic orbital electron populations 1.20626 0.83502 1.04750 1.04767 1.23929 0.99633 0.83285 0.90422 1.68370 1.10141 1.30988 1.16180 1.23197 0.88833 0.99194 0.88603 1.21487 0.97980 0.95021 1.04511 1.20204 0.87999 0.91429 0.96373 0.91877 1.21954 1.01954 0.99912 0.93746 1.61877 1.14036 1.36901 1.12524 1.20086 0.83985 0.95159 0.96644 1.21354 0.92252 1.42463 0.96651 0.92857 1.25632 1.00823 0.95807 0.96422 1.70036 1.18535 1.50888 1.19681 0.86016 0.79125 0.78578 0.81104 1.19501 1.22037 1.16896 1.20940 1.00838 0.92420 0.88671 1.20766 0.95461 0.97527 0.99078 1.21747 0.95850 0.98134 0.94662 1.22411 1.01819 0.93611 1.01268 1.23218 0.88455 1.00630 0.94903 1.67673 1.22784 1.21262 1.10190 1.22627 0.99441 0.87922 0.95374 1.21975 0.89427 0.96438 0.89373 1.20923 0.99969 0.90848 1.04768 1.68189 1.09408 1.30687 1.16463 0.88403 0.89185 0.88734 0.81761 0.91322 0.92971 0.94382 0.94485 0.98748 0.92988 0.93205 0.90187 0.84601 0.82200 0.80242 0.83076 0.88128 0.89016 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.32 71.24 0.74 -0.73 16 2 C 0.29 8.14 7.64 138.75 1.06 9.20 16 3 N -0.54 -16.86 10.33 -187.83 -1.94 -18.80 16 4 C 0.17 5.35 9.26 84.71 0.78 6.13 16 5 C -0.19 -5.59 4.10 -19.69 -0.08 -5.67 16 6 C 0.15 4.81 1.54 44.17 0.07 4.88 16 7 H 0.06 1.83 6.94 -2.39 -0.02 1.81 16 8 C -0.12 -4.46 7.46 71.98 0.54 -3.92 16 9 N -0.53 -18.75 3.45 -884.48 -3.05 -21.80 16 10 C 0.17 6.98 3.39 85.55 0.29 7.27 16 11 C -0.49 -25.25 6.79 25.60 0.17 -25.07 16 12 H 0.05 3.11 5.95 -2.91 -0.02 3.10 16 13 C 0.01 0.52 5.47 84.65 0.46 0.98 16 14 N -0.95 -56.71 13.96 21.45 0.30 -56.41 16 15 Si 0.93 40.91 27.37 68.60 1.88 42.79 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 17 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 18 H -0.25 -9.76 6.69 99.48 0.67 -9.09 16 19 C 0.10 2.93 4.71 85.56 0.40 3.33 16 20 C -0.13 -3.85 4.97 -19.77 -0.10 -3.94 16 21 C -0.08 -2.22 8.02 22.47 0.18 -2.04 16 22 C -0.17 -4.30 10.11 22.36 0.23 -4.08 16 23 C 0.08 2.23 11.18 84.69 0.95 3.17 16 24 N -0.51 -16.07 10.36 -195.83 -2.03 -18.10 16 25 C 0.10 3.23 10.86 84.67 0.92 4.15 16 26 C 0.17 4.74 6.82 42.56 0.29 5.03 16 27 C -0.11 -2.18 9.47 71.23 0.67 -1.50 16 28 N -0.53 -14.92 10.27 -176.03 -1.81 -16.72 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.17 5.64 7.39 -2.91 -0.02 5.62 16 33 H 0.07 2.97 5.94 -2.39 -0.01 2.95 16 34 H 0.05 1.68 7.43 -2.39 -0.02 1.67 16 35 H 0.04 1.66 6.55 -2.38 -0.02 1.65 16 36 H 0.04 1.56 4.38 -2.39 -0.01 1.54 16 37 H -0.01 -0.21 7.15 -2.39 -0.02 -0.23 16 38 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.05 1.35 8.08 -2.39 -0.02 1.33 16 40 H 0.08 2.25 6.00 -2.38 -0.01 2.24 16 41 H 0.14 3.64 7.65 -2.91 -0.02 3.62 16 42 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.18 3.44 8.06 -2.91 -0.02 3.41 16 44 H 0.15 4.51 8.06 -2.91 -0.02 4.48 16 45 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.09 1.75 5.99 -2.39 -0.01 1.74 16 Total: -1.00 -66.38 371.40 1.86 -64.53 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.94 Total: 27.32 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 7.57 Total: -2.80 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -8.53 Total: -131.84 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.88 Total: 42.79 kcal Total: -66.38 1.86 -64.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602436024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.400 kcal (2) G-P(sol) polarization free energy of solvation -66.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds