Wall clock time and date at job start Tue Mar 31 2020 14:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31806 * 119.12272 * 2 1 4 4 C 1.32320 * 120.82217 * 179.72411 * 3 2 1 5 5 C 1.38629 * 119.09707 * 0.56659 * 4 3 2 6 6 C 1.50700 * 120.79648 * 179.71488 * 5 4 3 7 7 H 1.08999 * 109.46864 * 223.71143 * 6 5 4 8 8 C 1.52998 * 109.46739 * 103.71517 * 6 5 4 9 9 N 1.46897 * 109.47313 * 343.71507 * 6 5 4 10 10 C 1.46906 * 110.99966 * 203.06192 * 9 6 5 11 11 C 1.50702 * 109.47153 * 72.07070 * 10 9 6 12 12 H 1.08002 * 119.99753 * 4.22648 * 11 10 9 13 13 C 1.37880 * 119.99952 * 184.22940 * 11 10 9 14 14 N 1.31514 * 119.99551 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 119.99756 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.47008 * 90.00203 * 15 13 11 17 17 H 1.48500 * 109.47040 * 209.99837 * 15 13 11 18 18 H 1.48503 * 109.47715 * 330.00281 * 15 13 11 19 19 C 1.46894 * 111.00427 * 79.10562 * 9 6 5 20 20 C 1.50699 * 109.47469 * 189.99823 * 19 9 6 21 21 C 1.38225 * 119.61492 * 95.00177 * 20 19 9 22 22 C 1.38631 * 119.15736 * 180.02562 * 21 20 19 23 23 C 1.38665 * 118.42331 * 359.97438 * 22 21 20 24 24 C 1.38188 * 119.16163 * 0.27890 * 23 22 21 25 25 N 1.31848 * 119.61776 * 275.02192 * 20 19 9 26 26 C 1.38576 * 118.39946 * 359.44910 * 5 4 3 27 27 C 1.50695 * 120.44705 * 180.29460 * 26 5 4 28 28 N 1.31777 * 119.12454 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47807 * 269.97644 * 1 2 3 30 30 H 1.08999 * 109.47297 * 29.98108 * 1 2 3 31 31 H 1.09004 * 109.46925 * 149.97484 * 1 2 3 32 32 H 1.07999 * 120.45568 * 180.30629 * 4 3 2 33 33 H 1.08999 * 109.47136 * 299.99459 * 8 6 5 34 34 H 1.08999 * 109.47263 * 59.99777 * 8 6 5 35 35 H 1.08997 * 109.46892 * 179.97438 * 8 6 5 36 36 H 1.08996 * 109.47213 * 192.06972 * 10 9 6 37 37 H 1.09001 * 109.46714 * 312.07298 * 10 9 6 38 38 H 0.97001 * 119.98980 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.47049 * 69.99906 * 19 9 6 40 40 H 1.09004 * 109.47235 * 310.00416 * 19 9 6 41 41 H 1.07999 * 120.42429 * 0.04234 * 21 20 19 42 42 H 1.08001 * 120.78827 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.41864 * 180.02562 * 23 22 21 44 44 H 1.07996 * 119.61302 * 179.70431 * 24 23 22 45 45 H 1.08997 * 109.47248 * 89.99678 * 27 26 5 46 46 H 1.09002 * 109.47361 * 209.99909 * 27 26 5 47 47 H 1.09007 * 109.47020 * 329.99659 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4711 1.1907 0.0055 5 6 4.1809 -0.0001 -0.0007 6 6 5.6879 0.0000 -0.0013 7 1 6.0509 -0.7393 -0.7153 8 6 6.1983 -0.3490 1.3982 9 7 6.1774 1.3313 -0.3832 10 6 7.5424 1.2560 -0.9210 11 6 7.5093 0.6239 -2.2886 12 1 6.5631 0.3720 -2.7443 13 6 8.6871 0.3671 -2.9580 14 7 8.6581 -0.1850 -4.1513 15 14 10.3235 0.8033 -2.1700 16 1 10.8134 -0.3513 -1.3749 17 1 11.3116 1.1297 -3.2293 18 1 10.1465 1.9782 -1.2791 19 6 6.1089 2.2626 0.7507 20 6 6.3816 3.6637 0.2672 21 6 5.3238 4.4931 -0.0550 22 6 5.5856 5.7799 -0.4993 23 6 6.9073 6.1864 -0.6029 24 6 7.9127 5.2996 -0.2678 25 7 7.6264 4.0839 0.1560 26 6 3.4713 -1.1904 -0.0008 27 6 4.1961 -2.5116 -0.0007 28 7 2.1483 -1.1512 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 3.9906 2.1375 0.0104 33 1 5.8352 0.3902 2.1122 34 1 5.8350 -1.3369 1.6816 35 1 7.2883 -0.3495 1.3977 36 1 7.9597 2.2602 -0.9948 37 1 8.1617 0.6530 -0.2569 38 1 9.4867 -0.3653 -4.6224 39 1 6.8544 1.9838 1.4955 40 1 5.1155 2.2192 1.1971 41 1 4.3064 4.1432 0.0385 42 1 4.7792 6.4500 -0.7586 43 1 7.1479 7.1820 -0.9451 44 1 8.9447 5.6069 -0.3503 45 1 4.3709 -2.8301 1.0269 46 1 3.5907 -3.2582 -0.5145 47 1 5.1512 -2.4020 -0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602466514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:14 Heat of formation + Delta-G solvation = 100.014931 kcal Electronic energy + Delta-G solvation = -28382.872416 eV Core-core repulsion = 24759.386420 eV Total energy + Delta-G solvation = -3623.485996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09269 -40.01085 -37.82982 -34.53652 -33.39896 -32.61638 -32.18021 -31.72140 -30.07717 -28.89342 -27.82182 -27.60034 -25.37615 -23.55710 -23.35103 -22.58755 -21.85522 -21.23171 -19.30253 -17.59898 -16.79747 -16.60498 -16.28623 -15.82872 -15.59185 -15.29324 -15.03264 -14.54111 -14.19250 -13.94610 -13.53047 -13.38552 -13.14052 -13.07880 -12.88062 -12.82075 -12.52589 -12.43068 -12.32372 -12.21978 -12.13990 -11.98558 -11.74698 -11.46118 -11.30561 -11.04190 -10.64150 -10.56995 -10.23917 -10.06505 -9.85825 -9.63196 -9.38869 -9.05007 -8.93382 -8.80055 -8.74382 -8.55243 -7.57356 -6.04954 -4.01827 1.17912 1.32462 1.35085 1.51177 3.29002 3.37632 3.45984 3.90194 3.95885 4.10917 4.32973 4.44168 4.47960 4.69408 4.79993 4.90075 5.01498 5.05328 5.21452 5.28064 5.31922 5.33971 5.39856 5.46893 5.52731 5.53538 5.59964 5.63604 5.64770 5.73719 5.74673 5.86350 5.86998 5.97024 6.01968 6.11016 6.17849 6.29116 6.33089 6.36630 6.50612 6.73737 6.87686 6.91265 6.96569 7.28327 7.64898 7.76051 7.89749 8.28555 8.36322 8.62839 9.03977 9.57381 11.07946 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.005383 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.254353 B = 5200.418483 C = 7270.559050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.298 3.702 3 N -0.526 5.526 4 C 0.156 3.844 5 C -0.163 4.163 6 C 0.131 3.869 7 H 0.118 0.882 8 C -0.179 4.179 9 N -0.514 5.514 10 C 0.157 3.843 11 C -0.509 4.509 12 H 0.078 0.922 13 C 0.071 3.929 14 N -0.900 5.900 15 Si 0.867 3.133 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.258 1.258 19 C 0.085 3.915 20 C 0.149 3.851 21 C -0.160 4.160 22 C -0.076 4.076 23 C -0.181 4.181 24 C 0.101 3.899 25 N -0.470 5.470 26 C 0.176 3.824 27 C -0.110 4.110 28 N -0.522 5.522 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.177 0.823 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.053 0.947 37 H -0.011 1.011 38 H 0.263 0.737 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.151 0.849 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 5.279 11.892 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.030 3.970 3 N -0.241 5.241 4 C -0.009 4.009 5 C -0.168 4.168 6 C 0.021 3.979 7 H 0.135 0.865 8 C -0.238 4.238 9 N -0.238 5.238 10 C 0.031 3.969 11 C -0.547 4.547 12 H 0.096 0.904 13 C -0.131 4.131 14 N -0.539 5.539 15 Si 0.694 3.306 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.183 1.183 19 C -0.044 4.044 20 C 0.011 3.989 21 C -0.180 4.180 22 C -0.102 4.102 23 C -0.201 4.201 24 C -0.057 4.057 25 N -0.180 5.180 26 C 0.029 3.971 27 C -0.167 4.167 28 N -0.237 5.237 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.193 0.807 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.007 0.993 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.168 0.832 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.933 4.829 11.586 16.007 hybrid contribution 1.803 0.597 0.438 1.949 sum -8.130 5.426 12.024 15.496 Atomic orbital electron populations 1.20467 0.86307 1.03751 1.03257 1.23088 0.97856 0.83768 0.92285 1.68270 1.10266 1.30291 1.15300 1.23480 0.88647 0.99334 0.89454 1.21587 0.98712 0.94598 1.01900 1.20460 0.87906 0.93273 0.96300 0.86466 1.22464 1.02236 1.01722 0.97341 1.62173 1.27825 1.06321 1.27475 1.20396 0.82972 0.98459 0.95064 1.21015 0.94717 1.39429 0.99572 0.90408 1.24848 0.98741 0.94751 0.94722 1.69901 1.27500 1.43506 1.13021 0.86967 0.84299 0.79858 0.79518 1.20405 1.21386 1.18265 1.21265 1.00808 0.88370 0.93912 1.21082 0.88297 0.95537 0.93949 1.21902 1.00331 0.94696 1.01072 1.21496 0.96859 0.95817 0.96022 1.22052 0.93910 1.01310 1.02874 1.22703 0.99683 0.88873 0.94401 1.67524 1.21981 1.15730 1.12747 1.21473 0.89204 0.95713 0.90669 1.20861 1.00496 0.92152 1.03209 1.68040 1.09407 1.30598 1.15668 0.90231 0.89966 0.90053 0.80675 0.92651 0.92121 0.91403 0.92875 0.99318 0.92752 0.92823 0.90047 0.85064 0.85146 0.85242 0.83190 0.90010 0.90227 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.32 36.00 0.37 -0.49 16 2 C 0.30 4.55 7.64 -157.20 -1.20 3.35 16 3 N -0.53 -8.54 10.33 -10.72 -0.11 -8.65 16 4 C 0.16 2.55 9.57 -17.20 -0.16 2.39 16 5 C -0.16 -2.70 5.10 -104.35 -0.53 -3.23 16 6 C 0.13 2.26 1.82 -68.87 -0.13 2.13 16 7 H 0.12 2.31 5.69 -51.93 -0.30 2.02 16 8 C -0.18 -2.58 8.05 37.16 0.30 -2.28 16 9 N -0.51 -9.93 3.73 -230.91 -0.86 -10.79 16 10 C 0.16 3.65 3.58 -4.97 -0.02 3.63 16 11 C -0.51 -14.06 8.85 -34.44 -0.30 -14.37 16 12 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 15 Si 0.87 21.41 27.39 -169.99 -4.66 16.75 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.26 -6.26 6.67 56.52 0.38 -5.89 16 19 C 0.08 1.38 2.98 -4.98 -0.01 1.36 16 20 C 0.15 2.50 5.75 -82.59 -0.47 2.03 16 21 C -0.16 -2.29 9.53 -39.44 -0.38 -2.66 16 22 C -0.08 -0.95 10.18 -39.28 -0.40 -1.35 16 23 C -0.18 -2.28 10.11 -39.44 -0.40 -2.68 16 24 C 0.10 1.50 11.18 -17.55 -0.20 1.31 16 25 N -0.47 -8.43 8.49 -9.48 -0.08 -8.51 16 26 C 0.18 2.77 6.80 -82.25 -0.56 2.21 16 27 C -0.11 -1.42 8.95 36.00 0.32 -1.10 16 28 N -0.52 -8.36 10.27 -6.99 -0.07 -8.44 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.18 2.75 3.60 -52.49 -0.19 2.56 16 33 H 0.05 0.73 6.45 -51.93 -0.34 0.40 16 34 H 0.06 0.75 6.71 -51.93 -0.35 0.40 16 35 H 0.07 1.04 7.22 -51.93 -0.37 0.66 16 36 H 0.05 1.31 4.94 -51.93 -0.26 1.05 16 37 H -0.01 -0.25 6.27 -51.93 -0.33 -0.58 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.05 0.88 6.94 -51.93 -0.36 0.52 16 40 H 0.08 1.15 5.16 -51.93 -0.27 0.88 16 41 H 0.13 1.65 6.83 -52.49 -0.36 1.29 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 43 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.08 0.89 7.65 -51.93 -0.40 0.49 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.09 1.21 6.36 -51.93 -0.33 0.88 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -33.26 367.87 -9.71 -42.98 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.38 Total: 5.50 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -3.87 Total: -7.83 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.35 Total: -62.95 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.66 Total: 16.75 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.26 -9.71 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602466514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.990 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds