Wall clock time and date at job start Tue Mar 31 2020 14:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31806 * 119.12272 * 2 1 4 4 C 1.32320 * 120.82217 * 179.72411 * 3 2 1 5 5 C 1.38629 * 119.09707 * 0.56659 * 4 3 2 6 6 C 1.50700 * 120.79648 * 179.71488 * 5 4 3 7 7 H 1.08999 * 109.46864 * 223.71143 * 6 5 4 8 8 C 1.52998 * 109.46739 * 103.71517 * 6 5 4 9 9 N 1.46897 * 109.47313 * 343.71507 * 6 5 4 10 10 C 1.46906 * 110.99966 * 203.06192 * 9 6 5 11 11 C 1.50702 * 109.47153 * 72.07070 * 10 9 6 12 12 H 1.08002 * 119.99753 * 4.22648 * 11 10 9 13 13 C 1.37880 * 119.99952 * 184.22940 * 11 10 9 14 14 N 1.31514 * 119.99551 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 119.99756 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.47008 * 90.00203 * 15 13 11 17 17 H 1.48500 * 109.47040 * 209.99837 * 15 13 11 18 18 H 1.48503 * 109.47715 * 330.00281 * 15 13 11 19 19 C 1.46894 * 111.00427 * 79.10562 * 9 6 5 20 20 C 1.50699 * 109.47469 * 189.99823 * 19 9 6 21 21 C 1.38225 * 119.61492 * 95.00177 * 20 19 9 22 22 C 1.38631 * 119.15736 * 180.02562 * 21 20 19 23 23 C 1.38665 * 118.42331 * 359.97438 * 22 21 20 24 24 C 1.38188 * 119.16163 * 0.27890 * 23 22 21 25 25 N 1.31848 * 119.61776 * 275.02192 * 20 19 9 26 26 C 1.38576 * 118.39946 * 359.44910 * 5 4 3 27 27 C 1.50695 * 120.44705 * 180.29460 * 26 5 4 28 28 N 1.31777 * 119.12454 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47807 * 269.97644 * 1 2 3 30 30 H 1.08999 * 109.47297 * 29.98108 * 1 2 3 31 31 H 1.09004 * 109.46925 * 149.97484 * 1 2 3 32 32 H 1.07999 * 120.45568 * 180.30629 * 4 3 2 33 33 H 1.08999 * 109.47136 * 299.99459 * 8 6 5 34 34 H 1.08999 * 109.47263 * 59.99777 * 8 6 5 35 35 H 1.08997 * 109.46892 * 179.97438 * 8 6 5 36 36 H 1.08996 * 109.47213 * 192.06972 * 10 9 6 37 37 H 1.09001 * 109.46714 * 312.07298 * 10 9 6 38 38 H 0.97001 * 119.98980 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.47049 * 69.99906 * 19 9 6 40 40 H 1.09004 * 109.47235 * 310.00416 * 19 9 6 41 41 H 1.07999 * 120.42429 * 0.04234 * 21 20 19 42 42 H 1.08001 * 120.78827 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.41864 * 180.02562 * 23 22 21 44 44 H 1.07996 * 119.61302 * 179.70431 * 24 23 22 45 45 H 1.08997 * 109.47248 * 89.99678 * 27 26 5 46 46 H 1.09002 * 109.47361 * 209.99909 * 27 26 5 47 47 H 1.09007 * 109.47020 * 329.99659 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4711 1.1907 0.0055 5 6 4.1809 -0.0001 -0.0007 6 6 5.6879 0.0000 -0.0013 7 1 6.0509 -0.7393 -0.7153 8 6 6.1983 -0.3490 1.3982 9 7 6.1774 1.3313 -0.3832 10 6 7.5424 1.2560 -0.9210 11 6 7.5093 0.6239 -2.2886 12 1 6.5631 0.3720 -2.7443 13 6 8.6871 0.3671 -2.9580 14 7 8.6581 -0.1850 -4.1513 15 14 10.3235 0.8033 -2.1700 16 1 10.8134 -0.3513 -1.3749 17 1 11.3116 1.1297 -3.2293 18 1 10.1465 1.9782 -1.2791 19 6 6.1089 2.2626 0.7507 20 6 6.3816 3.6637 0.2672 21 6 5.3238 4.4931 -0.0550 22 6 5.5856 5.7799 -0.4993 23 6 6.9073 6.1864 -0.6029 24 6 7.9127 5.2996 -0.2678 25 7 7.6264 4.0839 0.1560 26 6 3.4713 -1.1904 -0.0008 27 6 4.1961 -2.5116 -0.0007 28 7 2.1483 -1.1512 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 3.9906 2.1375 0.0104 33 1 5.8352 0.3902 2.1122 34 1 5.8350 -1.3369 1.6816 35 1 7.2883 -0.3495 1.3977 36 1 7.9597 2.2602 -0.9948 37 1 8.1617 0.6530 -0.2569 38 1 9.4867 -0.3653 -4.6224 39 1 6.8544 1.9838 1.4955 40 1 5.1155 2.2192 1.1971 41 1 4.3064 4.1432 0.0385 42 1 4.7792 6.4500 -0.7586 43 1 7.1479 7.1820 -0.9451 44 1 8.9447 5.6069 -0.3503 45 1 4.3709 -2.8301 1.0269 46 1 3.5907 -3.2582 -0.5145 47 1 5.1512 -2.4020 -0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602466514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:13 Heat of formation + Delta-G solvation = 78.588146 kcal Electronic energy + Delta-G solvation = -28383.801551 eV Core-core repulsion = 24759.386420 eV Total energy + Delta-G solvation = -3624.415131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.32137 -41.14296 -39.19948 -35.75639 -34.98482 -34.31874 -33.29416 -32.92176 -31.48487 -30.14691 -29.27154 -28.73291 -26.85088 -24.72317 -24.61476 -23.97376 -23.17188 -22.53783 -20.73224 -18.95805 -18.81049 -17.69566 -17.51317 -17.05444 -16.79819 -16.50135 -16.33952 -16.19169 -15.61934 -15.30760 -14.88003 -14.56500 -14.44043 -14.27220 -14.09660 -14.01928 -13.97792 -13.70538 -13.56229 -13.36885 -13.21329 -13.18912 -13.08379 -12.86039 -12.62566 -12.41764 -12.35923 -12.13217 -11.83349 -11.49399 -11.46112 -11.36730 -10.80194 -10.67882 -10.25937 -10.18059 -10.00203 -9.89198 -9.08974 -8.27184 -6.27897 -0.04188 0.09894 0.23710 0.45841 1.31871 1.35338 1.49319 2.35017 2.69497 2.76314 3.02209 3.07999 3.16180 3.27001 3.45953 3.60611 3.76943 3.79644 4.06000 4.07566 4.18200 4.23423 4.27165 4.32382 4.38941 4.46844 4.57694 4.61067 4.64457 4.66106 4.72302 4.76118 4.80924 4.85593 4.90110 4.94331 5.02213 5.09924 5.15372 5.19556 5.26222 5.30549 5.33877 5.57666 5.62101 5.87214 5.91976 6.07512 6.31923 6.58473 6.77580 7.14564 7.16429 7.35137 8.89401 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.005383 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.254353 B = 5200.418483 C = 7270.559050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.289 3.711 3 N -0.536 5.536 4 C 0.150 3.850 5 C -0.179 4.179 6 C 0.136 3.864 7 H 0.084 0.916 8 C -0.171 4.171 9 N -0.526 5.526 10 C 0.174 3.826 11 C -0.505 4.505 12 H 0.034 0.966 13 C 0.015 3.985 14 N -0.947 5.947 15 Si 0.935 3.065 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.251 1.251 19 C 0.092 3.908 20 C 0.119 3.881 21 C -0.166 4.166 22 C -0.076 4.076 23 C -0.172 4.172 24 C 0.078 3.922 25 N -0.510 5.510 26 C 0.170 3.830 27 C -0.108 4.108 28 N -0.532 5.532 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.180 0.820 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.046 0.954 37 H -0.012 1.012 38 H 0.265 0.735 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.145 0.855 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.166 0.834 45 H 0.107 0.893 46 H 0.086 0.914 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 6.635 13.593 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.022 3.978 3 N -0.251 5.251 4 C -0.015 4.015 5 C -0.183 4.183 6 C 0.026 3.974 7 H 0.102 0.898 8 C -0.229 4.229 9 N -0.250 5.250 10 C 0.047 3.953 11 C -0.544 4.544 12 H 0.052 0.948 13 C -0.183 4.183 14 N -0.589 5.589 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.175 1.175 19 C -0.036 4.036 20 C -0.018 4.018 21 C -0.186 4.186 22 C -0.102 4.102 23 C -0.191 4.191 24 C -0.079 4.079 25 N -0.220 5.220 26 C 0.024 3.976 27 C -0.164 4.164 28 N -0.248 5.248 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.196 0.804 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.006 0.994 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.120 0.880 41 H 0.162 0.838 42 H 0.183 0.817 43 H 0.183 0.817 44 H 0.183 0.817 45 H 0.126 0.874 46 H 0.105 0.895 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.789 6.187 13.310 18.216 hybrid contribution 1.912 0.220 -0.142 1.930 sum -8.877 6.407 13.168 17.124 Atomic orbital electron populations 1.20620 0.83306 1.04709 1.04855 1.23968 0.99725 0.83342 0.90785 1.68349 1.09978 1.30793 1.16015 1.23578 0.89091 0.99433 0.89380 1.21514 0.98048 0.95249 1.03524 1.20304 0.88581 0.91481 0.97022 0.89774 1.22385 1.01440 1.03361 0.95742 1.61980 1.25233 1.08014 1.29763 1.20006 0.85396 0.97152 0.92742 1.21207 0.92899 1.38864 1.01385 0.94814 1.25677 1.02651 0.94785 0.95148 1.70050 1.28573 1.45427 1.14806 0.85888 0.79483 0.80088 0.78671 1.19127 1.21133 1.17465 1.21263 1.01820 0.87846 0.92622 1.21183 0.88887 0.95938 0.95801 1.22125 1.00365 0.95385 1.00773 1.21962 0.98021 0.95517 0.94659 1.22443 0.93366 1.02314 1.00991 1.23137 1.01330 0.88668 0.94743 1.67423 1.22864 1.17490 1.14270 1.21874 0.89506 0.96460 0.89734 1.20912 0.99671 0.91115 1.04752 1.68165 1.09308 1.30957 1.16366 0.88148 0.88990 0.89069 0.80387 0.91273 0.90014 0.92453 0.93595 0.99441 0.92651 0.93062 0.88010 0.83771 0.81691 0.81699 0.81655 0.87444 0.89484 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.32 71.23 0.74 -0.77 16 2 C 0.29 8.45 7.64 138.75 1.06 9.51 16 3 N -0.54 -16.87 10.33 -187.84 -1.94 -18.81 16 4 C 0.15 4.87 9.57 84.71 0.81 5.68 16 5 C -0.18 -5.93 5.10 -19.69 -0.10 -6.03 16 6 C 0.14 4.80 1.82 44.17 0.08 4.88 16 7 H 0.08 3.51 5.69 -2.39 -0.01 3.50 16 8 C -0.17 -4.83 8.05 71.98 0.58 -4.25 16 9 N -0.53 -20.74 3.73 -884.47 -3.30 -24.03 16 10 C 0.17 8.28 3.58 85.56 0.31 8.58 16 11 C -0.51 -29.07 8.85 25.60 0.23 -28.84 16 12 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 13 C 0.01 0.86 5.47 84.66 0.46 1.32 16 14 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 15 Si 0.93 44.98 27.39 68.60 1.88 46.86 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 18 H -0.25 -11.69 6.67 99.48 0.66 -11.03 16 19 C 0.09 2.99 2.98 85.56 0.25 3.24 16 20 C 0.12 3.94 5.75 42.55 0.24 4.19 16 21 C -0.17 -4.53 9.53 22.36 0.21 -4.32 16 22 C -0.08 -1.70 10.18 22.47 0.23 -1.47 16 23 C -0.17 -3.85 10.11 22.36 0.23 -3.63 16 24 C 0.08 2.23 11.18 84.67 0.95 3.18 16 25 N -0.51 -18.10 8.49 -183.89 -1.56 -19.66 16 26 C 0.17 5.32 6.80 42.56 0.29 5.61 16 27 C -0.11 -2.73 8.95 71.23 0.64 -2.09 16 28 N -0.53 -16.52 10.27 -176.04 -1.81 -18.33 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.18 5.54 3.60 -2.91 -0.01 5.53 16 33 H 0.07 1.75 6.45 -2.39 -0.02 1.74 16 34 H 0.08 1.93 6.71 -2.39 -0.02 1.91 16 35 H 0.06 1.73 7.22 -2.39 -0.02 1.72 16 36 H 0.05 2.29 4.94 -2.39 -0.01 2.28 16 37 H -0.01 -0.57 6.27 -2.39 -0.01 -0.59 16 38 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.05 1.67 6.94 -2.38 -0.02 1.65 16 40 H 0.10 2.81 5.16 -2.38 -0.01 2.80 16 41 H 0.14 3.40 6.83 -2.91 -0.02 3.38 16 42 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 43 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 45 H 0.11 2.15 7.65 -2.39 -0.02 2.13 16 46 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.08 2.18 6.36 -2.38 -0.02 2.17 16 Total: -1.00 -74.72 367.87 1.72 -73.00 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.95 Total: 25.40 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 7.20 Total: -5.21 kcal Atomic # 7 Polarization: -131.73 SS G_CDS: -8.31 Total: -140.04 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -74.72 1.72 -73.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602466514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.583 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds