Wall clock time and date at job start Tue Mar 31 2020 14:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31805 * 119.12477 * 2 1 4 4 C 1.32322 * 120.81990 * 180.02562 * 3 2 1 5 5 C 1.38615 * 119.09936 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.79771 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47179 * 136.76597 * 6 5 4 8 8 C 1.53005 * 109.46948 * 256.76412 * 6 5 4 9 9 N 1.46904 * 109.47214 * 16.76231 * 6 5 4 10 10 C 1.46902 * 110.99912 * 155.89640 * 9 6 5 11 11 C 1.50698 * 109.46851 * 288.53231 * 10 9 6 12 12 H 1.08001 * 120.00514 * 355.88893 * 11 10 9 13 13 C 1.37884 * 119.99990 * 175.88205 * 11 10 9 14 14 N 1.31522 * 119.99638 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00284 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47045 * 89.99797 * 15 13 11 17 17 H 1.48497 * 109.46896 * 210.00326 * 15 13 11 18 18 H 1.48505 * 109.46801 * 330.00147 * 15 13 11 19 19 C 1.46901 * 110.99906 * 279.84826 * 9 6 5 20 20 C 1.50700 * 109.46657 * 169.99799 * 19 9 6 21 21 C 1.38227 * 119.61803 * 95.00417 * 20 19 9 22 22 C 1.38626 * 119.16425 * 180.02562 * 21 20 19 23 23 C 1.38673 * 118.41908 * 359.97438 * 22 21 20 24 24 C 1.38182 * 119.16350 * 0.27864 * 23 22 21 25 25 N 1.31855 * 119.61877 * 275.02003 * 20 19 9 26 26 C 1.38575 * 118.40359 * 0.26351 * 5 4 3 27 27 C 1.50698 * 120.44847 * 179.72686 * 26 5 4 28 28 N 1.31784 * 119.11771 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46911 * 89.99742 * 1 2 3 30 30 H 1.08996 * 109.47444 * 209.99513 * 1 2 3 31 31 H 1.08995 * 109.47063 * 330.00010 * 1 2 3 32 32 H 1.07994 * 120.44692 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.46742 * 59.99700 * 8 6 5 34 34 H 1.09000 * 109.47397 * 179.97438 * 8 6 5 35 35 H 1.09002 * 109.46919 * 300.00045 * 8 6 5 36 36 H 1.09001 * 109.47257 * 48.53004 * 10 9 6 37 37 H 1.08995 * 109.46931 * 168.53457 * 10 9 6 38 38 H 0.96998 * 119.99682 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.46933 * 50.00308 * 19 9 6 40 40 H 1.08996 * 109.47445 * 289.99875 * 19 9 6 41 41 H 1.08005 * 120.42049 * 359.97438 * 21 20 19 42 42 H 1.08002 * 120.78911 * 180.02562 * 22 21 20 43 43 H 1.07994 * 120.41942 * 180.02562 * 23 22 21 44 44 H 1.07996 * 119.61997 * 179.69844 * 24 23 22 45 45 H 1.09001 * 109.46804 * 90.00656 * 27 26 5 46 46 H 1.08999 * 109.47205 * 210.00604 * 27 26 5 47 47 H 1.08994 * 109.47230 * 330.00928 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1808 -0.0002 -0.0016 6 6 5.6878 -0.0003 -0.0016 7 1 6.0512 -0.7496 0.7016 8 6 6.1978 -0.3293 -1.4062 9 7 6.1776 1.3255 0.3990 10 6 7.5334 1.2391 0.9580 11 6 7.4770 0.5827 2.3133 12 1 6.5232 0.3220 2.7479 13 6 8.6430 0.3146 2.9986 14 7 9.8045 0.6323 2.4696 15 14 8.5732 -0.4997 4.6783 16 1 8.6223 -1.9749 4.5156 17 1 9.7310 -0.0526 5.4936 18 1 7.3105 -0.1188 5.3609 19 6 6.1320 2.2663 -0.7283 20 6 6.4035 3.6620 -0.2289 21 6 7.6883 4.1691 -0.2832 22 6 7.9276 5.4539 0.1792 23 6 6.8607 6.1842 0.6807 24 6 5.6046 5.6090 0.7081 25 7 5.4129 4.3853 0.2550 26 6 3.4712 -1.1904 -0.0077 27 6 4.1961 -2.5116 -0.0153 28 7 2.1483 -1.1513 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 3.9906 2.1373 -0.0001 33 1 5.8343 0.4201 -2.1094 34 1 7.2878 -0.3290 -1.4064 35 1 5.8343 -1.3130 -1.7034 36 1 8.1633 0.6474 0.2937 37 1 7.9502 2.2413 1.0568 38 1 10.6248 0.4434 2.9515 39 1 5.1457 2.2315 -1.1909 40 1 6.8880 1.9898 -1.4632 41 1 8.4957 3.5716 -0.6801 42 1 8.9211 5.8763 0.1488 43 1 7.0105 7.1883 1.0490 44 1 4.7695 6.1693 1.1016 45 1 4.3713 -2.8358 1.0105 46 1 3.5903 -3.2554 -0.5330 47 1 5.1508 -2.3993 -0.5289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602466517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:17 Heat of formation + Delta-G solvation = 92.983059 kcal Electronic energy + Delta-G solvation = -28304.615339 eV Core-core repulsion = 24680.824418 eV Total energy + Delta-G solvation = -3623.790921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96620 -39.88501 -37.72506 -34.45014 -33.33210 -32.67739 -32.12045 -31.53179 -29.85604 -28.72128 -27.57874 -27.49896 -25.16956 -23.38451 -23.33077 -22.66368 -21.89934 -21.21655 -19.29041 -17.51056 -16.53521 -16.36261 -16.10064 -15.63394 -15.42218 -15.26237 -14.97675 -14.59867 -14.17443 -13.87969 -13.50473 -13.34782 -13.04910 -12.89371 -12.82758 -12.65559 -12.56199 -12.31494 -12.24064 -12.13922 -12.04332 -11.78377 -11.49035 -11.33266 -11.14585 -10.99495 -10.74643 -10.67151 -10.16762 -10.11214 -9.90269 -9.55223 -9.27689 -9.08615 -8.78912 -8.70444 -8.59458 -8.47677 -7.43571 -6.10070 -4.10501 1.27973 1.43970 1.48254 1.64077 3.26634 3.33872 3.39195 4.01143 4.08563 4.19429 4.38071 4.47151 4.61400 4.76807 4.93539 5.05625 5.11899 5.19138 5.25886 5.36419 5.41884 5.45473 5.51666 5.54548 5.60124 5.64762 5.65609 5.70199 5.73546 5.77044 5.86417 5.93386 6.01499 6.06621 6.10290 6.18003 6.35056 6.37162 6.43504 6.49889 6.59258 6.87542 7.01379 7.11607 7.19146 7.41848 7.72356 7.94494 8.04034 8.37229 8.41593 8.48653 8.97203 9.53880 11.00192 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.005608 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.561113 B = 4991.640700 C = 7248.841159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.295 3.705 3 N -0.525 5.525 4 C 0.161 3.839 5 C -0.169 4.169 6 C 0.134 3.866 7 H 0.112 0.888 8 C -0.181 4.181 9 N -0.521 5.521 10 C 0.188 3.812 11 C -0.506 4.506 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.897 5.897 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.089 3.911 20 C 0.150 3.850 21 C -0.152 4.152 22 C -0.076 4.076 23 C -0.183 4.183 24 C 0.096 3.904 25 N -0.470 5.470 26 C 0.171 3.829 27 C -0.112 4.112 28 N -0.526 5.526 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.189 0.811 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.000 1.000 37 H 0.037 0.963 38 H 0.261 0.739 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.150 0.850 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.295 3.014 -8.519 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.027 3.973 3 N -0.239 5.239 4 C -0.003 4.003 5 C -0.174 4.174 6 C 0.023 3.977 7 H 0.130 0.870 8 C -0.239 4.239 9 N -0.245 5.245 10 C 0.064 3.936 11 C -0.544 4.544 12 H 0.080 0.920 13 C -0.142 4.142 14 N -0.536 5.536 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.039 4.039 20 C 0.012 3.988 21 C -0.173 4.173 22 C -0.102 4.102 23 C -0.203 4.203 24 C -0.061 4.061 25 N -0.180 5.180 26 C 0.025 3.975 27 C -0.169 4.169 28 N -0.241 5.241 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.206 0.794 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.018 0.982 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.167 0.833 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.242 2.831 -8.079 13.348 hybrid contribution 2.587 -0.218 0.561 2.656 sum -7.655 2.613 -7.517 11.043 Atomic orbital electron populations 1.20453 0.86454 1.03611 1.03193 1.23105 0.97837 0.83896 0.92427 1.68323 1.10534 1.29979 1.15111 1.23766 0.88517 0.99887 0.88141 1.21648 0.98818 0.94594 1.02297 1.20381 0.87852 0.93548 0.95877 0.87034 1.22522 1.02297 1.01592 0.97499 1.62233 1.29316 1.05883 1.27072 1.19890 0.81559 0.97653 0.94507 1.21115 0.92660 1.38704 1.01942 0.92006 1.24929 0.95355 0.95962 0.98003 1.69940 0.97368 1.47920 1.38419 0.86572 0.77683 0.79548 0.84136 1.20644 1.21257 1.19843 1.21192 1.01193 0.88097 0.93431 1.21070 0.88997 0.95223 0.93539 1.21996 0.97959 0.96126 1.01198 1.21496 0.99122 0.94094 0.95533 1.22028 0.94408 1.01322 1.02504 1.22639 0.96228 0.91383 0.95862 1.67416 1.35326 1.06174 1.09067 1.21456 0.89283 0.95644 0.91090 1.20899 0.99913 0.92165 1.03906 1.68020 1.09386 1.30665 1.16059 0.90298 0.90196 0.90008 0.79400 0.92636 0.91264 0.92155 0.98178 0.94511 0.92942 0.90069 0.93316 0.84949 0.85271 0.85428 0.83257 0.89615 0.90501 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.32 36.01 0.37 -0.56 16 2 C 0.29 4.82 7.64 -157.19 -1.20 3.62 16 3 N -0.52 -9.38 10.33 -10.72 -0.11 -9.49 16 4 C 0.16 2.94 9.61 -17.20 -0.17 2.78 16 5 C -0.17 -2.95 5.10 -104.36 -0.53 -3.48 16 6 C 0.13 2.37 1.73 -68.86 -0.12 2.25 16 7 H 0.11 2.20 6.50 -51.93 -0.34 1.86 16 8 C -0.18 -2.68 7.87 37.16 0.29 -2.38 16 9 N -0.52 -10.33 3.71 -230.91 -0.86 -11.19 16 10 C 0.19 4.46 4.50 -4.98 -0.02 4.44 16 11 C -0.51 -13.50 8.26 -34.44 -0.28 -13.78 16 12 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 13 C 0.06 1.60 5.46 -17.81 -0.10 1.50 16 14 N -0.90 -25.26 13.29 55.43 0.74 -24.53 16 15 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.09 1.52 2.92 -4.98 -0.01 1.51 16 20 C 0.15 2.64 5.69 -82.59 -0.47 2.17 16 21 C -0.15 -2.50 8.03 -39.44 -0.32 -2.82 16 22 C -0.08 -1.09 10.18 -39.28 -0.40 -1.49 16 23 C -0.18 -2.43 10.11 -39.44 -0.40 -2.83 16 24 C 0.10 1.42 11.18 -17.55 -0.20 1.22 16 25 N -0.47 -8.23 9.97 -9.47 -0.09 -8.33 16 26 C 0.17 2.81 6.81 -82.24 -0.56 2.25 16 27 C -0.11 -1.47 9.53 36.00 0.34 -1.13 16 28 N -0.53 -8.82 10.27 -6.99 -0.07 -8.89 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.19 3.52 4.82 -52.49 -0.25 3.27 16 33 H 0.05 0.77 6.44 -51.93 -0.33 0.44 16 34 H 0.07 1.08 7.29 -51.93 -0.38 0.70 16 35 H 0.06 0.78 6.06 -51.93 -0.31 0.46 16 36 H 0.00 0.01 7.16 -51.93 -0.37 -0.36 16 37 H 0.04 0.93 5.57 -51.93 -0.29 0.64 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.08 1.33 5.31 -51.93 -0.28 1.05 16 40 H 0.05 0.78 6.86 -51.93 -0.36 0.42 16 41 H 0.13 2.10 8.01 -52.48 -0.42 1.68 16 42 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.09 1.06 4.92 -51.93 -0.26 0.80 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -31.24 373.31 -10.08 -41.32 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.51 Total: 6.00 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -3.77 Total: -6.73 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.40 Total: -62.43 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.24 -10.08 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602466517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.302 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds