Wall clock time and date at job start Tue Mar 31 2020 14:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31805 * 119.12477 * 2 1 4 4 C 1.32322 * 120.81990 * 180.02562 * 3 2 1 5 5 C 1.38615 * 119.09936 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.79771 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47179 * 136.76597 * 6 5 4 8 8 C 1.53005 * 109.46948 * 256.76412 * 6 5 4 9 9 N 1.46904 * 109.47214 * 16.76231 * 6 5 4 10 10 C 1.46902 * 110.99912 * 155.89640 * 9 6 5 11 11 C 1.50698 * 109.46851 * 288.53231 * 10 9 6 12 12 H 1.08001 * 120.00514 * 355.88893 * 11 10 9 13 13 C 1.37884 * 119.99990 * 175.88205 * 11 10 9 14 14 N 1.31522 * 119.99638 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00284 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47045 * 89.99797 * 15 13 11 17 17 H 1.48497 * 109.46896 * 210.00326 * 15 13 11 18 18 H 1.48505 * 109.46801 * 330.00147 * 15 13 11 19 19 C 1.46901 * 110.99906 * 279.84826 * 9 6 5 20 20 C 1.50700 * 109.46657 * 169.99799 * 19 9 6 21 21 C 1.38227 * 119.61803 * 95.00417 * 20 19 9 22 22 C 1.38626 * 119.16425 * 180.02562 * 21 20 19 23 23 C 1.38673 * 118.41908 * 359.97438 * 22 21 20 24 24 C 1.38182 * 119.16350 * 0.27864 * 23 22 21 25 25 N 1.31855 * 119.61877 * 275.02003 * 20 19 9 26 26 C 1.38575 * 118.40359 * 0.26351 * 5 4 3 27 27 C 1.50698 * 120.44847 * 179.72686 * 26 5 4 28 28 N 1.31784 * 119.11771 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46911 * 89.99742 * 1 2 3 30 30 H 1.08996 * 109.47444 * 209.99513 * 1 2 3 31 31 H 1.08995 * 109.47063 * 330.00010 * 1 2 3 32 32 H 1.07994 * 120.44692 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.46742 * 59.99700 * 8 6 5 34 34 H 1.09000 * 109.47397 * 179.97438 * 8 6 5 35 35 H 1.09002 * 109.46919 * 300.00045 * 8 6 5 36 36 H 1.09001 * 109.47257 * 48.53004 * 10 9 6 37 37 H 1.08995 * 109.46931 * 168.53457 * 10 9 6 38 38 H 0.96998 * 119.99682 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.46933 * 50.00308 * 19 9 6 40 40 H 1.08996 * 109.47445 * 289.99875 * 19 9 6 41 41 H 1.08005 * 120.42049 * 359.97438 * 21 20 19 42 42 H 1.08002 * 120.78911 * 180.02562 * 22 21 20 43 43 H 1.07994 * 120.41942 * 180.02562 * 23 22 21 44 44 H 1.07996 * 119.61997 * 179.69844 * 24 23 22 45 45 H 1.09001 * 109.46804 * 90.00656 * 27 26 5 46 46 H 1.08999 * 109.47205 * 210.00604 * 27 26 5 47 47 H 1.08994 * 109.47230 * 330.00928 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1808 -0.0002 -0.0016 6 6 5.6878 -0.0003 -0.0016 7 1 6.0512 -0.7496 0.7016 8 6 6.1978 -0.3293 -1.4062 9 7 6.1776 1.3255 0.3990 10 6 7.5334 1.2391 0.9580 11 6 7.4770 0.5827 2.3133 12 1 6.5232 0.3220 2.7479 13 6 8.6430 0.3146 2.9986 14 7 9.8045 0.6323 2.4696 15 14 8.5732 -0.4997 4.6783 16 1 8.6223 -1.9749 4.5156 17 1 9.7310 -0.0526 5.4936 18 1 7.3105 -0.1188 5.3609 19 6 6.1320 2.2663 -0.7283 20 6 6.4035 3.6620 -0.2289 21 6 7.6883 4.1691 -0.2832 22 6 7.9276 5.4539 0.1792 23 6 6.8607 6.1842 0.6807 24 6 5.6046 5.6090 0.7081 25 7 5.4129 4.3853 0.2550 26 6 3.4712 -1.1904 -0.0077 27 6 4.1961 -2.5116 -0.0153 28 7 2.1483 -1.1513 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 3.9906 2.1373 -0.0001 33 1 5.8343 0.4201 -2.1094 34 1 7.2878 -0.3290 -1.4064 35 1 5.8343 -1.3130 -1.7034 36 1 8.1633 0.6474 0.2937 37 1 7.9502 2.2413 1.0568 38 1 10.6248 0.4434 2.9515 39 1 5.1457 2.2315 -1.1909 40 1 6.8880 1.9898 -1.4632 41 1 8.4957 3.5716 -0.6801 42 1 8.9211 5.8763 0.1488 43 1 7.0105 7.1883 1.0490 44 1 4.7695 6.1693 1.1016 45 1 4.3713 -2.8358 1.0105 46 1 3.5903 -3.2554 -0.5330 47 1 5.1508 -2.3993 -0.5289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602466517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:16 Heat of formation + Delta-G solvation = 74.272352 kcal Electronic energy + Delta-G solvation = -28305.426696 eV Core-core repulsion = 24680.824418 eV Total energy + Delta-G solvation = -3624.602278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.27580 -41.10634 -39.15299 -35.74908 -35.00496 -34.27703 -33.35231 -32.75917 -31.22583 -30.00610 -29.07946 -28.73481 -26.75520 -24.79567 -24.64369 -24.05898 -23.22870 -22.52373 -20.75647 -18.87842 -18.35153 -17.70815 -17.42453 -16.97273 -16.66372 -16.62610 -16.40511 -16.20717 -15.50682 -15.29210 -14.88110 -14.51308 -14.31354 -14.19307 -14.01693 -13.99418 -13.93482 -13.71974 -13.39306 -13.32844 -13.21790 -13.14795 -13.01979 -12.77451 -12.65466 -12.48730 -12.38209 -12.23329 -11.97201 -11.41480 -11.40647 -11.28771 -10.71633 -10.56272 -10.30948 -10.10608 -9.97487 -9.82891 -9.01847 -8.18344 -6.25194 -0.01666 0.13616 0.25162 0.46881 1.37374 1.39416 1.49394 2.38947 2.73302 2.82609 3.04165 3.14568 3.22204 3.34346 3.43293 3.67231 3.78545 3.90880 4.06509 4.14882 4.20852 4.24684 4.27894 4.32709 4.46155 4.48660 4.52130 4.56627 4.68752 4.70143 4.75350 4.80232 4.84587 4.89031 4.92142 5.02742 5.08998 5.14105 5.21913 5.28054 5.29774 5.34477 5.38431 5.61542 5.67132 5.87913 6.06039 6.11935 6.34116 6.57157 6.88839 7.17353 7.18237 7.42913 8.91090 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.005608 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.561113 B = 4991.640700 C = 7248.841159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.287 3.713 3 N -0.541 5.541 4 C 0.150 3.850 5 C -0.181 4.181 6 C 0.138 3.862 7 H 0.089 0.911 8 C -0.172 4.172 9 N -0.531 5.531 10 C 0.209 3.791 11 C -0.516 4.516 12 H 0.048 0.952 13 C 0.015 3.985 14 N -0.924 5.924 15 Si 0.950 3.050 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.277 1.277 19 C 0.097 3.903 20 C 0.125 3.875 21 C -0.171 4.171 22 C -0.081 4.081 23 C -0.172 4.172 24 C 0.083 3.917 25 N -0.497 5.497 26 C 0.170 3.830 27 C -0.109 4.109 28 N -0.532 5.532 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.179 0.821 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.083 0.917 36 H -0.019 1.019 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.127 0.873 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.177 0.823 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 3.101 -8.410 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.020 3.980 3 N -0.257 5.257 4 C -0.014 4.014 5 C -0.185 4.185 6 C 0.028 3.972 7 H 0.107 0.893 8 C -0.230 4.230 9 N -0.255 5.255 10 C 0.084 3.916 11 C -0.555 4.555 12 H 0.066 0.934 13 C -0.184 4.184 14 N -0.565 5.565 15 Si 0.776 3.224 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.203 1.203 19 C -0.031 4.031 20 C -0.013 4.013 21 C -0.192 4.192 22 C -0.107 4.107 23 C -0.191 4.191 24 C -0.074 4.074 25 N -0.207 5.207 26 C 0.024 3.976 27 C -0.166 4.166 28 N -0.248 5.248 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.196 0.804 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.101 0.899 36 H -0.001 1.001 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.145 0.855 42 H 0.173 0.827 43 H 0.184 0.816 44 H 0.194 0.806 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.252 2.913 -7.985 14.101 hybrid contribution 2.822 -0.166 0.529 2.876 sum -8.430 2.747 -7.456 11.584 Atomic orbital electron populations 1.20608 0.83345 1.04663 1.04778 1.23987 0.99741 0.83376 0.90921 1.68367 1.10288 1.30921 1.16086 1.23689 0.89073 0.99859 0.88778 1.21585 0.98335 0.95009 1.03612 1.20267 0.88236 0.91868 0.96792 0.89346 1.22430 1.01470 1.03179 0.95919 1.62066 1.26790 1.07531 1.29067 1.19457 0.83274 0.95719 0.93181 1.21340 0.92095 1.38799 1.03269 0.93386 1.25618 0.95071 0.96526 1.01170 1.70034 0.97832 1.48871 1.39716 0.85669 0.77345 0.79156 0.80188 1.19490 1.20783 1.20256 1.21146 1.01614 0.87755 0.92608 1.21111 0.89690 0.95466 0.94997 1.22093 0.97478 0.97409 1.02195 1.21891 1.00845 0.93314 0.94676 1.22440 0.93294 1.02660 1.00738 1.23225 0.98006 0.90812 0.95375 1.67393 1.35763 1.07562 1.09979 1.21928 0.89487 0.96448 0.89761 1.20979 1.00240 0.91007 1.04404 1.68166 1.09368 1.30746 1.16542 0.88286 0.88819 0.89226 0.80406 0.91733 0.92342 0.89873 1.00079 0.96299 0.92796 0.89515 0.92649 0.85527 0.82670 0.81579 0.80583 0.89393 0.88534 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.32 71.24 0.74 -0.89 16 2 C 0.29 9.06 7.64 138.75 1.06 10.12 16 3 N -0.54 -19.24 10.33 -187.84 -1.94 -21.18 16 4 C 0.15 5.55 9.61 84.71 0.81 6.37 16 5 C -0.18 -6.36 5.10 -19.69 -0.10 -6.46 16 6 C 0.14 5.03 1.73 44.17 0.08 5.10 16 7 H 0.09 3.60 6.50 -2.39 -0.02 3.59 16 8 C -0.17 -5.10 7.87 71.98 0.57 -4.53 16 9 N -0.53 -21.82 3.71 -884.46 -3.28 -25.10 16 10 C 0.21 10.31 4.50 85.56 0.38 10.70 16 11 C -0.52 -28.32 8.26 25.60 0.21 -28.11 16 12 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 13 C 0.01 0.82 5.46 84.66 0.46 1.28 16 14 N -0.92 -52.81 13.29 21.45 0.28 -52.53 16 15 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 C 0.10 3.43 2.92 85.56 0.25 3.68 16 20 C 0.13 4.51 5.69 42.55 0.24 4.75 16 21 C -0.17 -5.74 8.03 22.36 0.18 -5.56 16 22 C -0.08 -2.24 10.18 22.47 0.23 -2.02 16 23 C -0.17 -4.22 10.11 22.36 0.23 -4.00 16 24 C 0.08 2.35 11.18 84.67 0.95 3.30 16 25 N -0.50 -17.56 9.97 -183.88 -1.83 -19.40 16 26 C 0.17 5.46 6.81 42.56 0.29 5.75 16 27 C -0.11 -2.74 9.53 71.24 0.68 -2.06 16 28 N -0.53 -17.19 10.27 -176.03 -1.81 -19.00 16 29 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.18 6.89 4.82 -2.91 -0.01 6.88 16 33 H 0.06 1.79 6.44 -2.38 -0.02 1.77 16 34 H 0.06 1.86 7.29 -2.39 -0.02 1.84 16 35 H 0.08 2.06 6.06 -2.39 -0.01 2.04 16 36 H -0.02 -0.96 7.16 -2.39 -0.02 -0.98 16 37 H 0.02 1.00 5.57 -2.39 -0.01 0.99 16 38 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.09 2.94 5.31 -2.39 -0.01 2.93 16 40 H 0.06 1.84 6.86 -2.39 -0.02 1.83 16 41 H 0.13 4.23 8.01 -2.91 -0.02 4.21 16 42 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 43 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.18 3.83 8.06 -2.91 -0.02 3.81 16 45 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.09 2.17 4.92 -2.39 -0.01 2.16 16 Total: -1.00 -68.29 373.31 1.68 -66.60 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.99 Total: 27.34 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 7.25 Total: -2.58 kcal Atomic # 7 Polarization: -128.62 SS G_CDS: -8.58 Total: -137.21 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -68.29 1.68 -66.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602466517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.875 kcal (2) G-P(sol) polarization free energy of solvation -68.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds