Wall clock time and date at job start Tue Mar 31 2020 14:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86793 * 120.00301 * 2 1 4 4 H 1.48504 * 109.47090 * 269.99911 * 3 2 1 5 5 H 1.48508 * 109.47412 * 29.99961 * 3 2 1 6 6 H 1.48501 * 109.47207 * 150.00039 * 3 2 1 7 7 C 1.39872 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99939 * 197.96493 * 7 2 1 9 9 C 1.41131 * 119.99954 * 17.96097 * 7 2 1 10 10 C 1.40891 * 120.15492 * 24.61661 * 9 7 2 11 11 C 1.36339 * 119.83281 * 179.71972 * 10 9 7 12 12 C 1.39561 * 120.16579 * 0.29841 * 11 10 9 13 13 N 1.38858 * 119.84677 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00620 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.47196 * 34.99840 * 14 13 12 16 16 C 1.50700 * 109.47594 * 275.00431 * 14 13 12 17 17 N 1.33234 * 125.53312 * 134.99243 * 16 14 13 18 18 C 1.30829 * 109.83210 * 180.02562 * 17 16 14 19 19 N 1.34428 * 108.07776 * 0.02562 * 18 17 16 20 20 H 0.96996 * 126.82592 * 180.02562 * 19 18 17 21 21 N 1.30715 * 125.51955 * 314.68906 * 16 14 13 22 22 C 1.52995 * 109.47656 * 154.99780 * 14 13 12 23 23 C 1.53005 * 109.47219 * 300.00299 * 22 14 13 24 24 C 1.53002 * 109.47372 * 179.97438 * 23 22 14 25 25 C 1.53002 * 109.46751 * 59.99975 * 24 23 22 26 26 C 1.52997 * 109.47322 * 300.00248 * 25 24 23 27 27 C 1.52992 * 109.47432 * 60.00024 * 26 25 24 28 28 C 1.39575 * 120.31498 * 359.97438 * 12 11 10 29 29 C 1.36333 * 120.15772 * 359.95537 * 28 12 11 30 30 H 0.97000 * 119.99538 * 0.02562 * 1 2 3 31 31 H 1.07993 * 120.08546 * 359.97438 * 10 9 7 32 32 H 1.08010 * 119.91762 * 180.27403 * 11 10 9 33 33 H 0.97005 * 119.99847 * 359.97438 * 13 12 11 34 34 H 1.08001 * 125.96406 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.46987 * 60.00260 * 22 14 13 36 36 H 1.09000 * 109.47109 * 299.99887 * 23 22 14 37 37 H 1.09007 * 109.46574 * 60.00057 * 23 22 14 38 38 H 1.09007 * 109.47048 * 300.00548 * 24 23 22 39 39 H 1.08995 * 109.47274 * 180.02562 * 24 23 22 40 40 H 1.08998 * 109.46800 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.47005 * 60.00091 * 25 24 23 42 42 H 1.09000 * 109.46952 * 299.99876 * 26 25 24 43 43 H 1.08997 * 109.47026 * 180.02562 * 26 25 24 44 44 H 1.09004 * 109.47243 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.47173 * 59.99987 * 27 26 25 46 46 H 1.07998 * 119.91858 * 179.97438 * 28 12 11 47 47 H 1.08002 * 120.07942 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.4907 2.0463 -1.4001 5 1 1.4406 2.6527 0.7001 6 1 3.5407 1.4400 0.7000 7 6 2.0083 -1.2114 0.0005 8 1 3.0488 -1.2341 0.2890 9 6 1.3542 -2.4039 -0.3758 10 6 0.2259 -2.3567 -1.2183 11 6 -0.3976 -3.5132 -1.5824 12 6 0.0754 -4.7413 -1.1177 13 7 -0.5650 -5.9151 -1.4923 14 6 -0.0711 -7.2061 -1.0070 15 1 0.3112 -7.0908 0.0073 16 6 1.0346 -7.6920 -1.9082 17 7 2.1935 -8.2092 -1.5024 18 6 2.9250 -8.5275 -2.5393 19 7 2.2345 -8.2133 -3.6491 20 1 2.5225 -8.3356 -4.5672 21 7 1.0099 -7.6796 -3.2151 22 6 -1.2143 -8.2228 -1.0086 23 6 -2.3369 -7.7295 -0.0934 24 6 -3.4804 -8.7460 -0.0954 25 6 -2.9649 -10.0946 0.4111 26 6 -1.8423 -10.5878 -0.5039 27 6 -0.6989 -9.5714 -0.5019 28 6 1.1892 -4.7953 -0.2782 29 6 1.8234 -3.6469 0.0929 30 1 -0.4849 0.8401 -0.0004 31 1 -0.1417 -1.4072 -1.5782 32 1 -1.2599 -3.4790 -2.2319 33 1 -1.3394 -5.8802 -2.0754 34 1 3.9117 -8.9654 -2.5091 35 1 -1.5966 -8.3381 -2.0228 36 1 -1.9546 -7.6142 0.9208 37 1 -2.7044 -6.7690 -0.4547 38 1 -3.8626 -8.8610 -1.1098 39 1 -4.2803 -8.3944 0.5561 40 1 -3.7796 -10.8186 0.4101 41 1 -2.5827 -9.9796 1.4254 42 1 -2.2245 -10.7028 -1.5182 43 1 -1.4754 -11.5487 -0.1433 44 1 0.1007 -9.9227 -1.1542 45 1 -0.3167 -9.4565 0.5124 46 1 1.5495 -5.7490 0.0780 47 1 2.6854 -3.6902 0.7423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602615584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:24 Heat of formation + Delta-G solvation = 87.969423 kcal Electronic energy + Delta-G solvation = -27679.298950 eV Core-core repulsion = 24055.290622 eV Total energy + Delta-G solvation = -3624.008328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.96247 -39.05332 -37.67321 -35.35203 -33.37225 -32.25956 -31.30188 -30.73429 -30.56741 -29.42543 -28.31603 -25.98859 -24.15903 -22.78191 -22.46853 -21.82712 -21.00914 -20.34920 -19.68097 -19.31503 -18.23242 -17.12250 -16.27808 -15.73075 -15.15557 -14.99231 -14.88195 -14.71024 -14.38310 -14.14059 -13.95234 -13.80134 -12.91405 -12.77702 -12.50981 -12.19853 -12.14296 -12.05582 -11.93100 -11.81392 -11.59675 -11.29502 -11.12511 -11.03767 -10.92092 -10.80861 -10.46747 -10.46054 -10.20946 -10.06840 -9.88672 -9.88166 -9.63099 -9.44130 -9.24976 -9.20226 -8.56321 -7.41823 -6.60811 -6.36920 -3.99361 1.78181 2.79163 2.94768 3.07095 3.16440 3.18943 3.20974 3.39809 4.06615 4.08741 4.35043 4.68679 4.73530 4.80365 4.81263 4.93583 5.10095 5.22275 5.31431 5.34864 5.49154 5.51735 5.55942 5.64180 5.80224 5.89310 5.92171 5.99571 6.10613 6.14641 6.16588 6.25662 6.35069 6.38000 6.40705 6.42490 6.50702 6.61438 6.91164 7.11647 7.12748 7.26284 7.35495 7.63682 7.73045 7.85945 8.20293 8.25741 8.40173 8.52992 8.71688 8.84812 9.10805 9.20466 10.41377 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.003219 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.451689 B = 8697.380948 C = 9953.120336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.076 3.924 10 C -0.125 4.125 11 C -0.158 4.158 12 C 0.091 3.909 13 N -0.740 5.740 14 C 0.258 3.742 15 H 0.099 0.901 16 C 0.228 3.772 17 N -0.536 5.536 18 C 0.251 3.749 19 N -0.493 5.493 20 H 0.436 0.564 21 N -0.302 5.302 22 C -0.083 4.083 23 C -0.110 4.110 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.116 4.116 27 C -0.107 4.107 28 C -0.155 4.155 29 C -0.188 4.188 30 H 0.275 0.725 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.388 0.612 34 H 0.217 0.783 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 -19.042 -4.230 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.074 3.926 10 C -0.145 4.145 11 C -0.180 4.180 12 C -0.005 4.005 13 N -0.374 5.374 14 C 0.147 3.853 15 H 0.117 0.883 16 C -0.057 4.057 17 N -0.264 5.264 18 C -0.049 4.049 19 N -0.210 5.210 20 H 0.281 0.719 21 N -0.130 5.130 22 C -0.103 4.103 23 C -0.148 4.148 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.154 4.154 27 C -0.146 4.146 28 C -0.176 4.176 29 C -0.208 4.208 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.222 0.778 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.533 -18.703 -4.123 19.319 hybrid contribution 0.811 0.670 -0.988 1.443 sum -1.722 -18.033 -5.111 18.822 Atomic orbital electron populations 1.69862 1.07313 1.28523 1.37755 1.25786 0.94653 1.00809 0.92766 0.86420 0.80506 0.81304 0.79022 1.19623 1.20583 1.18885 1.19374 0.97921 0.91403 1.41170 0.91019 1.17495 0.92350 0.91971 0.90829 1.20895 0.98233 0.96322 0.99066 1.20017 1.01548 0.91835 1.04622 1.17314 0.96267 0.84961 1.02006 1.43785 1.34629 1.01394 1.57611 1.18903 0.87826 0.84048 0.94518 0.88323 1.25322 0.94728 0.95481 0.90170 1.70417 1.04704 1.20426 1.30901 1.26003 0.99305 0.97346 0.82228 1.48190 1.13730 1.49013 1.10105 0.71912 1.77995 1.00528 1.20780 1.13738 1.21336 0.94658 0.94043 1.00294 1.21531 0.94682 0.98615 0.99966 1.21533 0.97830 0.95102 1.01112 1.21546 0.97834 0.96865 0.99465 1.21503 0.95961 0.98145 0.99761 1.21479 0.97314 0.93974 1.01788 1.19946 0.97708 0.97261 1.02727 1.20555 1.02738 0.92677 1.04871 0.91380 0.86421 0.89571 0.77819 0.76704 0.90878 0.91561 0.91015 0.92257 0.92021 0.92470 0.91900 0.92380 0.92273 0.92313 0.91398 0.89095 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.75 10.96 55.54 0.61 -21.14 16 2 C 0.07 1.97 5.13 -17.33 -0.09 1.88 16 3 Si 0.90 19.61 29.59 -169.99 -5.03 14.58 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.47 -12.99 9.03 -37.87 -0.34 -13.33 16 8 H 0.07 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.08 2.11 5.57 -106.79 -0.60 1.52 16 10 C -0.13 -3.35 8.64 -39.26 -0.34 -3.69 16 11 C -0.16 -3.78 9.82 -39.77 -0.39 -4.17 16 12 C 0.09 2.02 6.64 -83.69 -0.56 1.46 16 13 N -0.74 -13.16 4.50 -53.16 -0.24 -13.40 16 14 C 0.26 4.05 1.80 -69.09 -0.12 3.93 16 15 H 0.10 1.70 6.45 -51.93 -0.33 1.37 16 16 C 0.23 3.67 5.54 -156.86 -0.87 2.80 16 17 N -0.54 -8.11 11.18 -11.98 -0.13 -8.25 16 18 C 0.25 2.79 13.13 -90.66 -1.19 1.60 16 19 N -0.49 -5.63 7.45 29.53 0.22 -5.41 16 20 H 0.44 3.26 8.96 -182.33 -1.63 1.63 16 21 N -0.30 -4.76 12.78 32.42 0.41 -4.34 16 22 C -0.08 -1.04 1.81 -90.62 -0.16 -1.21 16 23 C -0.11 -1.31 5.05 -26.73 -0.13 -1.44 16 24 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 25 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 26 C -0.12 -1.11 5.92 -26.74 -0.16 -1.27 16 27 C -0.11 -1.22 4.96 -26.73 -0.13 -1.36 16 28 C -0.15 -3.62 9.07 -39.77 -0.36 -3.98 16 29 C -0.19 -4.84 9.74 -39.27 -0.38 -5.22 16 30 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 31 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 32 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 33 H 0.39 6.41 8.39 -40.82 -0.34 6.07 16 34 H 0.22 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.93 7.45 -51.93 -0.39 0.54 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.73 7.21 -51.93 -0.37 0.36 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.09 2.00 6.14 -52.49 -0.32 1.68 16 47 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -32.01 375.88 -12.98 -44.99 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -8.34 Total: 12.35 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -6.15 Total: -25.05 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.87 Total: -52.54 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.01 -12.98 -44.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602615584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.961 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds