Wall clock time and date at job start Tue Mar 31 2020 14:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86793 * 120.00301 * 2 1 4 4 H 1.48504 * 109.47090 * 269.99911 * 3 2 1 5 5 H 1.48508 * 109.47412 * 29.99961 * 3 2 1 6 6 H 1.48501 * 109.47207 * 150.00039 * 3 2 1 7 7 C 1.39872 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99939 * 197.96493 * 7 2 1 9 9 C 1.41131 * 119.99954 * 17.96097 * 7 2 1 10 10 C 1.40891 * 120.15492 * 24.61661 * 9 7 2 11 11 C 1.36339 * 119.83281 * 179.71972 * 10 9 7 12 12 C 1.39561 * 120.16579 * 0.29841 * 11 10 9 13 13 N 1.38858 * 119.84677 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00620 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.47196 * 34.99840 * 14 13 12 16 16 C 1.50700 * 109.47594 * 275.00431 * 14 13 12 17 17 N 1.33234 * 125.53312 * 134.99243 * 16 14 13 18 18 C 1.30829 * 109.83210 * 180.02562 * 17 16 14 19 19 N 1.34428 * 108.07776 * 0.02562 * 18 17 16 20 20 H 0.96996 * 126.82592 * 180.02562 * 19 18 17 21 21 N 1.30715 * 125.51955 * 314.68906 * 16 14 13 22 22 C 1.52995 * 109.47656 * 154.99780 * 14 13 12 23 23 C 1.53005 * 109.47219 * 300.00299 * 22 14 13 24 24 C 1.53002 * 109.47372 * 179.97438 * 23 22 14 25 25 C 1.53002 * 109.46751 * 59.99975 * 24 23 22 26 26 C 1.52997 * 109.47322 * 300.00248 * 25 24 23 27 27 C 1.52992 * 109.47432 * 60.00024 * 26 25 24 28 28 C 1.39575 * 120.31498 * 359.97438 * 12 11 10 29 29 C 1.36333 * 120.15772 * 359.95537 * 28 12 11 30 30 H 0.97000 * 119.99538 * 0.02562 * 1 2 3 31 31 H 1.07993 * 120.08546 * 359.97438 * 10 9 7 32 32 H 1.08010 * 119.91762 * 180.27403 * 11 10 9 33 33 H 0.97005 * 119.99847 * 359.97438 * 13 12 11 34 34 H 1.08001 * 125.96406 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.46987 * 60.00260 * 22 14 13 36 36 H 1.09000 * 109.47109 * 299.99887 * 23 22 14 37 37 H 1.09007 * 109.46574 * 60.00057 * 23 22 14 38 38 H 1.09007 * 109.47048 * 300.00548 * 24 23 22 39 39 H 1.08995 * 109.47274 * 180.02562 * 24 23 22 40 40 H 1.08998 * 109.46800 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.47005 * 60.00091 * 25 24 23 42 42 H 1.09000 * 109.46952 * 299.99876 * 26 25 24 43 43 H 1.08997 * 109.47026 * 180.02562 * 26 25 24 44 44 H 1.09004 * 109.47243 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.47173 * 59.99987 * 27 26 25 46 46 H 1.07998 * 119.91858 * 179.97438 * 28 12 11 47 47 H 1.08002 * 120.07942 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.4907 2.0463 -1.4001 5 1 1.4406 2.6527 0.7001 6 1 3.5407 1.4400 0.7000 7 6 2.0083 -1.2114 0.0005 8 1 3.0488 -1.2341 0.2890 9 6 1.3542 -2.4039 -0.3758 10 6 0.2259 -2.3567 -1.2183 11 6 -0.3976 -3.5132 -1.5824 12 6 0.0754 -4.7413 -1.1177 13 7 -0.5650 -5.9151 -1.4923 14 6 -0.0711 -7.2061 -1.0070 15 1 0.3112 -7.0908 0.0073 16 6 1.0346 -7.6920 -1.9082 17 7 2.1935 -8.2092 -1.5024 18 6 2.9250 -8.5275 -2.5393 19 7 2.2345 -8.2133 -3.6491 20 1 2.5225 -8.3356 -4.5672 21 7 1.0099 -7.6796 -3.2151 22 6 -1.2143 -8.2228 -1.0086 23 6 -2.3369 -7.7295 -0.0934 24 6 -3.4804 -8.7460 -0.0954 25 6 -2.9649 -10.0946 0.4111 26 6 -1.8423 -10.5878 -0.5039 27 6 -0.6989 -9.5714 -0.5019 28 6 1.1892 -4.7953 -0.2782 29 6 1.8234 -3.6469 0.0929 30 1 -0.4849 0.8401 -0.0004 31 1 -0.1417 -1.4072 -1.5782 32 1 -1.2599 -3.4790 -2.2319 33 1 -1.3394 -5.8802 -2.0754 34 1 3.9117 -8.9654 -2.5091 35 1 -1.5966 -8.3381 -2.0228 36 1 -1.9546 -7.6142 0.9208 37 1 -2.7044 -6.7690 -0.4547 38 1 -3.8626 -8.8610 -1.1098 39 1 -4.2803 -8.3944 0.5561 40 1 -3.7796 -10.8186 0.4101 41 1 -2.5827 -9.9796 1.4254 42 1 -2.2245 -10.7028 -1.5182 43 1 -1.4754 -11.5487 -0.1433 44 1 0.1007 -9.9227 -1.1542 45 1 -0.3167 -9.4565 0.5124 46 1 1.5495 -5.7490 0.0780 47 1 2.6854 -3.6902 0.7423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602615584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:24 Heat of formation + Delta-G solvation = 70.841761 kcal Electronic energy + Delta-G solvation = -27680.041661 eV Core-core repulsion = 24055.290622 eV Total energy + Delta-G solvation = -3624.751040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.01123 -40.26461 -39.29423 -36.84091 -35.10013 -33.49622 -32.60437 -31.73504 -31.51016 -31.32909 -30.09211 -27.35041 -25.90845 -23.82491 -23.39670 -23.11052 -22.47274 -22.10117 -20.65507 -20.60678 -19.23015 -19.07061 -17.80562 -17.23888 -16.68092 -16.30124 -15.88401 -15.81036 -15.63469 -15.51015 -14.99344 -14.85314 -14.52378 -14.51493 -14.01653 -13.78722 -13.60422 -13.21747 -13.06806 -13.01890 -12.97241 -12.86532 -12.70657 -12.64195 -12.27457 -11.98938 -11.90196 -11.57124 -11.36357 -11.23200 -11.15433 -11.08822 -10.98986 -10.93581 -10.86418 -10.52672 -10.39494 -9.40317 -8.56017 -8.21899 -6.02109 0.78023 1.09279 1.18861 1.39409 1.52160 1.57806 1.93446 1.98184 2.27105 2.75823 2.83169 3.28455 3.73981 3.82055 3.86538 3.91651 3.93864 4.18422 4.34275 4.39620 4.43703 4.46219 4.46925 4.55761 4.65768 4.66607 4.72033 4.81220 4.98998 5.03493 5.16994 5.18749 5.28171 5.28649 5.28834 5.31593 5.35828 5.40748 5.42175 5.44850 5.50996 5.61184 5.71927 5.76107 5.92210 6.17781 6.33684 6.40849 6.65269 6.83987 7.07912 7.09232 7.23372 7.28232 8.47973 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.003219 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.451689 B = 8697.380948 C = 9953.120336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.033 3.967 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.507 4.507 8 H 0.065 0.935 9 C 0.040 3.960 10 C -0.141 4.141 11 C -0.169 4.169 12 C 0.116 3.884 13 N -0.730 5.730 14 C 0.258 3.742 15 H 0.081 0.919 16 C 0.216 3.784 17 N -0.573 5.573 18 C 0.266 3.734 19 N -0.482 5.482 20 H 0.454 0.546 21 N -0.334 5.334 22 C -0.071 4.071 23 C -0.109 4.109 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.100 4.100 28 C -0.160 4.160 29 C -0.199 4.199 30 H 0.283 0.717 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.397 0.603 34 H 0.268 0.732 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 -20.854 -4.939 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.538 4.538 8 H 0.084 0.916 9 C 0.038 3.962 10 C -0.161 4.161 11 C -0.191 4.191 12 C 0.017 3.983 13 N -0.363 5.363 14 C 0.148 3.852 15 H 0.099 0.901 16 C -0.069 4.069 17 N -0.303 5.303 18 C -0.033 4.033 19 N -0.201 5.201 20 H 0.302 0.698 21 N -0.164 5.164 22 C -0.091 4.091 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.139 4.139 28 C -0.182 4.182 29 C -0.219 4.219 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.232 0.768 34 H 0.284 0.716 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.123 0.877 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.472 -20.575 -4.869 21.287 hybrid contribution 0.803 1.007 -0.831 1.533 sum -1.669 -19.568 -5.700 20.449 Atomic orbital electron populations 1.69919 1.08687 1.29817 1.38259 1.26605 0.95483 1.04022 0.91804 0.85291 0.79048 0.76572 0.79244 1.18981 1.19350 1.18558 1.19578 0.97967 0.92810 1.43459 0.91636 1.17785 0.93488 0.92813 0.92156 1.20837 0.98800 0.96654 0.99850 1.20207 1.02156 0.91634 1.05066 1.17352 0.95100 0.86031 0.99769 1.43770 1.34333 1.01085 1.57111 1.18987 0.89173 0.83555 0.93512 0.90114 1.25105 0.95153 0.96349 0.90321 1.70385 1.05015 1.21972 1.32890 1.26967 1.00187 0.95157 0.80947 1.48106 1.12515 1.48131 1.11357 0.69807 1.77874 1.02891 1.22002 1.13625 1.21246 0.93595 0.93802 1.00441 1.21513 0.95240 0.98812 0.99122 1.21512 0.97047 0.94928 1.01719 1.21543 0.98155 0.96648 0.99154 1.21481 0.95276 0.97985 1.00166 1.21405 0.97785 0.93653 1.01012 1.20060 0.98015 0.97107 1.03003 1.20707 1.03101 0.93011 1.05089 0.90694 0.88099 0.87443 0.76831 0.71611 0.90955 0.92439 0.92272 0.91736 0.91334 0.90778 0.92023 0.92106 0.91025 0.93355 0.91938 0.87722 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.47 10.96 21.82 0.24 -46.23 16 2 C 0.03 1.78 5.13 85.23 0.44 2.21 16 3 Si 0.98 40.91 29.59 68.60 2.03 42.94 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.51 -29.31 9.03 23.38 0.21 -29.10 16 8 H 0.07 3.70 7.91 -2.91 -0.02 3.68 16 9 C 0.04 2.32 5.57 -21.27 -0.12 2.21 16 10 C -0.14 -7.83 8.64 22.48 0.19 -7.63 16 11 C -0.17 -8.14 9.82 22.15 0.22 -7.93 16 12 C 0.12 5.18 6.64 38.67 0.26 5.43 16 13 N -0.73 -25.66 4.50 -322.09 -1.45 -27.11 16 14 C 0.26 8.00 1.80 44.24 0.08 8.08 16 15 H 0.08 2.80 6.45 -2.39 -0.02 2.79 16 16 C 0.22 6.74 5.54 138.63 0.77 7.51 16 17 N -0.57 -16.53 11.18 -191.81 -2.14 -18.68 16 18 C 0.27 5.18 13.13 180.36 2.37 7.55 16 19 N -0.48 -9.92 7.45 -60.49 -0.45 -10.37 16 20 H 0.45 5.63 8.96 -213.10 -1.91 3.72 16 21 N -0.33 -10.10 12.78 -51.34 -0.66 -10.75 16 22 C -0.07 -1.71 1.81 -10.79 -0.02 -1.73 16 23 C -0.11 -2.51 5.05 30.60 0.15 -2.35 16 24 C -0.11 -2.05 5.92 30.60 0.18 -1.87 16 25 C -0.12 -1.86 5.92 30.59 0.18 -1.68 16 26 C -0.11 -1.88 5.92 30.59 0.18 -1.70 16 27 C -0.10 -2.17 4.96 30.59 0.15 -2.01 16 28 C -0.16 -7.58 9.07 22.15 0.20 -7.38 16 29 C -0.20 -10.56 9.74 22.47 0.22 -10.34 16 30 H 0.28 14.22 8.30 -92.71 -0.77 13.45 16 31 H 0.10 5.84 6.16 -2.91 -0.02 5.83 16 32 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 33 H 0.40 12.80 8.39 -92.70 -0.78 12.02 16 34 H 0.27 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.49 7.45 -2.38 -0.02 1.48 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 1.15 7.21 -2.38 -0.02 1.13 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.10 4.64 6.14 -2.91 -0.02 4.62 16 47 H 0.09 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -71.91 375.88 1.54 -70.37 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -1.69 Total: 40.56 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 5.66 Total: -40.73 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -4.46 Total: -113.14 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -71.91 1.54 -70.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602615584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.208 kcal (2) G-P(sol) polarization free energy of solvation -71.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds