Wall clock time and date at job start Tue Mar 31 2020 14:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48507 * 109.47030 * 274.65098 * 3 2 1 5 5 H 1.48492 * 109.47533 * 34.65116 * 3 2 1 6 6 H 1.48498 * 109.47192 * 154.65402 * 3 2 1 7 7 C 1.39868 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00105 * 162.12702 * 7 2 1 9 9 C 1.41143 * 119.99586 * 342.13012 * 7 2 1 10 10 C 1.40886 * 120.15537 * 155.08761 * 9 7 2 11 11 C 1.36333 * 119.83588 * 180.02562 * 10 9 7 12 12 C 1.39559 * 120.16427 * 359.97438 * 11 10 9 13 13 N 1.38863 * 119.84707 * 179.97438 * 12 11 10 14 14 C 1.46492 * 120.00273 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.47438 * 324.99529 * 14 13 12 16 16 C 1.50694 * 109.47352 * 84.99884 * 14 13 12 17 17 N 1.33249 * 125.52831 * 224.99950 * 16 14 13 18 18 C 1.30829 * 109.82955 * 180.02562 * 17 16 14 19 19 N 1.34428 * 108.07822 * 359.97438 * 18 17 16 20 20 H 0.97001 * 126.82003 * 180.02562 * 19 18 17 21 21 N 1.30711 * 125.53163 * 44.69407 * 16 14 13 22 22 C 1.53005 * 109.47146 * 205.00196 * 14 13 12 23 23 C 1.52997 * 109.46750 * 299.99639 * 22 14 13 24 24 C 1.52999 * 109.47348 * 180.02562 * 23 22 14 25 25 C 1.52999 * 109.46980 * 59.99839 * 24 23 22 26 26 C 1.52997 * 109.47212 * 300.00244 * 25 24 23 27 27 C 1.53002 * 109.47065 * 179.97438 * 22 14 13 28 28 C 1.39573 * 120.31637 * 0.26034 * 12 11 10 29 29 C 1.36342 * 120.15825 * 359.47973 * 28 12 11 30 30 H 0.96998 * 119.99812 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.07833 * 0.03735 * 10 9 7 32 32 H 1.08007 * 119.92015 * 179.97438 * 11 10 9 33 33 H 0.96994 * 119.99608 * 359.97438 * 13 12 11 34 34 H 1.08007 * 125.95749 * 180.02562 * 18 17 16 35 35 H 1.08995 * 109.47220 * 59.99826 * 22 14 13 36 36 H 1.09005 * 109.47380 * 300.00110 * 23 22 14 37 37 H 1.09003 * 109.47320 * 59.99986 * 23 22 14 38 38 H 1.09005 * 109.46964 * 300.00357 * 24 23 22 39 39 H 1.09000 * 109.47434 * 180.02562 * 24 23 22 40 40 H 1.09003 * 109.47322 * 180.02562 * 25 24 23 41 41 H 1.09005 * 109.46849 * 60.00448 * 25 24 23 42 42 H 1.08995 * 109.47412 * 299.99920 * 26 25 24 43 43 H 1.09006 * 109.47112 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.47023 * 299.99555 * 27 22 14 45 45 H 1.08995 * 109.47222 * 59.99854 * 27 22 14 46 46 H 1.07996 * 119.92209 * 179.72327 * 28 12 11 47 47 H 1.07995 * 120.08165 * 180.23414 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3922 2.1032 -1.3955 5 1 1.4932 2.6223 0.7960 6 1 3.5863 1.4138 0.5993 7 6 2.0084 -1.2113 0.0005 8 1 3.0493 -1.2340 -0.2865 9 6 1.3537 -2.4039 0.3762 10 6 1.8227 -3.6468 -0.0931 11 6 1.1850 -4.7947 0.2734 12 6 0.0706 -4.7408 1.1117 13 7 -0.5743 -5.9140 1.4804 14 6 -1.7447 -5.8614 2.3598 15 1 -1.6204 -5.0549 3.0824 16 6 -2.9813 -5.6111 1.5357 17 7 -3.9470 -4.7424 1.8326 18 6 -4.8730 -4.7752 0.9089 19 7 -4.5096 -5.6826 -0.0139 20 1 -4.9989 -5.9242 -0.8159 21 7 -3.2779 -6.2070 0.4107 22 6 -1.8863 -7.1926 3.1007 23 6 -2.0610 -8.3246 2.0864 24 6 -2.2032 -9.6557 2.8272 25 6 -3.4260 -9.6003 3.7452 26 6 -3.2513 -8.4683 4.7595 27 6 -3.1085 -7.1373 4.0195 28 6 -0.4027 -3.5127 1.5765 29 6 0.2282 -2.3571 1.2224 30 1 -0.4850 0.8400 -0.0004 31 1 2.6854 -3.6900 -0.7413 32 1 1.5432 -5.7482 -0.0858 33 1 -0.2501 -6.7684 1.1552 34 1 -5.7721 -4.1770 0.8907 35 1 -0.9920 -7.3736 3.6968 36 1 -2.9555 -8.1436 1.4902 37 1 -1.1901 -8.3638 1.4320 38 1 -1.3090 -9.8370 3.4236 39 1 -2.3272 -10.4623 2.1045 40 1 -3.5271 -10.5485 4.2733 41 1 -4.3202 -9.4191 3.1487 42 1 -2.3572 -8.6495 5.3559 43 1 -4.1226 -8.4286 5.4132 44 1 -2.9836 -6.3309 4.7421 45 1 -4.0031 -6.9561 3.4238 46 1 -1.2683 -3.4781 2.2213 47 1 -0.1367 -1.4079 1.5858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602615588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:28 Heat of formation + Delta-G solvation = 92.791090 kcal Electronic energy + Delta-G solvation = -27954.273371 eV Core-core repulsion = 24330.474126 eV Total energy + Delta-G solvation = -3623.799245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93504 -39.06168 -37.67636 -35.32501 -33.38660 -32.18193 -31.27702 -30.81912 -30.40091 -29.39153 -28.37138 -25.96885 -24.16928 -22.76223 -22.38024 -21.88717 -21.09079 -20.51402 -19.80382 -18.92995 -18.01227 -17.15407 -16.39509 -15.58246 -15.35474 -15.08842 -14.87017 -14.51331 -14.28319 -14.13817 -13.89896 -13.51434 -13.35461 -12.70940 -12.65393 -12.20996 -12.17413 -12.06375 -11.89011 -11.65016 -11.51402 -11.26115 -11.12303 -11.06679 -10.97333 -10.79404 -10.48679 -10.43808 -10.24186 -10.03141 -9.80942 -9.76927 -9.64639 -9.37937 -9.21733 -9.19654 -8.54728 -7.41822 -6.60294 -6.36419 -3.99005 1.85666 2.85999 2.95562 3.14502 3.17013 3.18782 3.22790 3.39615 4.08605 4.13488 4.40317 4.66135 4.73824 4.75073 4.82234 4.98602 5.11884 5.23071 5.30336 5.38901 5.45996 5.50404 5.52299 5.64119 5.87050 5.89136 5.93983 5.97495 6.07608 6.12582 6.19481 6.25821 6.33970 6.35377 6.38395 6.43976 6.54647 6.71765 6.97077 7.01823 7.19522 7.25570 7.40816 7.59915 7.75765 7.90808 8.21240 8.29739 8.37992 8.54068 8.74588 8.85093 9.11050 9.20718 10.41867 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.003188 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.159452 B = 8780.198587 C = 9408.002121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.077 3.923 10 C -0.189 4.189 11 C -0.154 4.154 12 C 0.089 3.911 13 N -0.742 5.742 14 C 0.257 3.743 15 H 0.099 0.901 16 C 0.231 3.769 17 N -0.535 5.535 18 C 0.252 3.748 19 N -0.494 5.494 20 H 0.436 0.564 21 N -0.299 5.299 22 C -0.086 4.086 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.118 4.118 26 C -0.117 4.117 27 C -0.109 4.109 28 C -0.159 4.159 29 C -0.124 4.124 30 H 0.275 0.725 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.388 0.612 34 H 0.216 0.784 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.272 -14.298 5.447 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.074 3.926 10 C -0.210 4.210 11 C -0.176 4.176 12 C -0.007 4.007 13 N -0.377 5.377 14 C 0.146 3.854 15 H 0.117 0.883 16 C -0.055 4.055 17 N -0.264 5.264 18 C -0.048 4.048 19 N -0.211 5.211 20 H 0.280 0.720 21 N -0.128 5.128 22 C -0.106 4.106 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.156 4.156 26 C -0.154 4.154 27 C -0.147 4.147 28 C -0.180 4.180 29 C -0.144 4.144 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.222 0.778 34 H 0.232 0.768 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.072 -14.335 5.528 18.938 hybrid contribution -0.320 0.690 -1.055 1.300 sum -11.392 -13.645 4.473 18.330 Atomic orbital electron populations 1.69869 1.07355 1.28501 1.37696 1.25793 0.94631 1.00846 0.92762 0.86429 0.80786 0.81433 0.78741 1.19940 1.20288 1.18654 1.19361 0.97851 0.91401 1.41243 0.91002 1.17499 0.92376 0.91956 0.90799 1.20522 1.02824 0.92639 1.04988 1.19780 0.97965 0.97021 1.02829 1.17342 0.95683 0.85553 1.02133 1.43857 1.30707 1.06335 1.56778 1.18916 0.79392 0.97958 0.89163 0.88300 1.25208 0.96720 0.91235 0.92288 1.70417 1.03376 1.23607 1.28969 1.25982 0.99654 0.92788 0.86368 1.48203 1.17984 1.32400 1.22545 0.71986 1.77976 0.96504 1.23176 1.15142 1.21377 0.99342 0.93438 0.96462 1.21643 1.02885 0.93480 0.97397 1.21525 0.98128 0.97467 0.98384 1.21524 0.98331 0.98184 0.97522 1.21505 1.01537 0.94796 0.97600 1.21488 0.97744 0.97205 0.98276 1.20176 1.01362 0.91879 1.04630 1.20917 0.98137 0.96432 0.98920 0.91415 0.89150 0.89657 0.77790 0.76788 0.89679 0.90849 0.91921 0.92083 0.92383 0.92460 0.92484 0.91934 0.92245 0.91437 0.92074 0.89022 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.99 10.98 55.54 0.61 -21.38 16 2 C 0.07 1.97 5.13 -17.34 -0.09 1.89 16 3 Si 0.90 19.62 29.60 -169.99 -5.03 14.59 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.47 -12.99 9.03 -37.87 -0.34 -13.33 16 8 H 0.07 1.93 7.91 -52.49 -0.41 1.51 16 9 C 0.08 2.12 5.57 -106.79 -0.59 1.53 16 10 C -0.19 -4.83 9.74 -39.27 -0.38 -5.21 16 11 C -0.15 -3.56 9.82 -39.78 -0.39 -3.95 16 12 C 0.09 2.00 6.64 -83.69 -0.56 1.44 16 13 N -0.74 -13.34 5.11 -53.16 -0.27 -13.61 16 14 C 0.26 4.13 2.05 -69.09 -0.14 3.98 16 15 H 0.10 1.74 6.46 -51.93 -0.34 1.41 16 16 C 0.23 3.81 5.01 -156.85 -0.79 3.02 16 17 N -0.54 -8.58 11.18 -11.98 -0.13 -8.72 16 18 C 0.25 3.05 13.13 -90.66 -1.19 1.86 16 19 N -0.49 -5.99 7.45 29.53 0.22 -5.77 16 20 H 0.44 3.58 8.96 -182.34 -1.63 1.95 16 21 N -0.30 -4.78 10.98 32.42 0.36 -4.43 16 22 C -0.09 -1.08 2.18 -90.62 -0.20 -1.28 16 23 C -0.12 -1.39 4.64 -26.73 -0.12 -1.51 16 24 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 25 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 26 C -0.12 -1.11 5.92 -26.76 -0.16 -1.27 16 27 C -0.11 -1.25 4.96 -26.76 -0.13 -1.38 16 28 C -0.16 -3.87 9.06 -39.77 -0.36 -4.23 16 29 C -0.12 -3.36 8.63 -39.26 -0.34 -3.70 16 30 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 31 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 32 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 33 H 0.39 6.37 6.86 -40.82 -0.28 6.09 16 34 H 0.22 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.99 6.06 -51.93 -0.31 0.67 16 37 H 0.06 0.78 6.51 -51.93 -0.34 0.44 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.79 7.21 -51.93 -0.37 0.41 16 46 H 0.09 2.14 6.14 -52.49 -0.32 1.82 16 47 H 0.12 3.30 6.18 -52.49 -0.32 2.97 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -32.20 369.85 -12.90 -45.10 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -8.12 Total: 13.36 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -6.10 Total: -24.72 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.78 Total: -53.90 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.20 -12.90 -45.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602615588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.891 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds