Wall clock time and date at job start Tue Mar 31 2020 14:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48507 * 109.47030 * 274.65098 * 3 2 1 5 5 H 1.48492 * 109.47533 * 34.65116 * 3 2 1 6 6 H 1.48498 * 109.47192 * 154.65402 * 3 2 1 7 7 C 1.39868 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00105 * 162.12702 * 7 2 1 9 9 C 1.41143 * 119.99586 * 342.13012 * 7 2 1 10 10 C 1.40886 * 120.15537 * 155.08761 * 9 7 2 11 11 C 1.36333 * 119.83588 * 180.02562 * 10 9 7 12 12 C 1.39559 * 120.16427 * 359.97438 * 11 10 9 13 13 N 1.38863 * 119.84707 * 179.97438 * 12 11 10 14 14 C 1.46492 * 120.00273 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.47438 * 324.99529 * 14 13 12 16 16 C 1.50694 * 109.47352 * 84.99884 * 14 13 12 17 17 N 1.33249 * 125.52831 * 224.99950 * 16 14 13 18 18 C 1.30829 * 109.82955 * 180.02562 * 17 16 14 19 19 N 1.34428 * 108.07822 * 359.97438 * 18 17 16 20 20 H 0.97001 * 126.82003 * 180.02562 * 19 18 17 21 21 N 1.30711 * 125.53163 * 44.69407 * 16 14 13 22 22 C 1.53005 * 109.47146 * 205.00196 * 14 13 12 23 23 C 1.52997 * 109.46750 * 299.99639 * 22 14 13 24 24 C 1.52999 * 109.47348 * 180.02562 * 23 22 14 25 25 C 1.52999 * 109.46980 * 59.99839 * 24 23 22 26 26 C 1.52997 * 109.47212 * 300.00244 * 25 24 23 27 27 C 1.53002 * 109.47065 * 179.97438 * 22 14 13 28 28 C 1.39573 * 120.31637 * 0.26034 * 12 11 10 29 29 C 1.36342 * 120.15825 * 359.47973 * 28 12 11 30 30 H 0.96998 * 119.99812 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.07833 * 0.03735 * 10 9 7 32 32 H 1.08007 * 119.92015 * 179.97438 * 11 10 9 33 33 H 0.96994 * 119.99608 * 359.97438 * 13 12 11 34 34 H 1.08007 * 125.95749 * 180.02562 * 18 17 16 35 35 H 1.08995 * 109.47220 * 59.99826 * 22 14 13 36 36 H 1.09005 * 109.47380 * 300.00110 * 23 22 14 37 37 H 1.09003 * 109.47320 * 59.99986 * 23 22 14 38 38 H 1.09005 * 109.46964 * 300.00357 * 24 23 22 39 39 H 1.09000 * 109.47434 * 180.02562 * 24 23 22 40 40 H 1.09003 * 109.47322 * 180.02562 * 25 24 23 41 41 H 1.09005 * 109.46849 * 60.00448 * 25 24 23 42 42 H 1.08995 * 109.47412 * 299.99920 * 26 25 24 43 43 H 1.09006 * 109.47112 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.47023 * 299.99555 * 27 22 14 45 45 H 1.08995 * 109.47222 * 59.99854 * 27 22 14 46 46 H 1.07996 * 119.92209 * 179.72327 * 28 12 11 47 47 H 1.07995 * 120.08165 * 180.23414 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3922 2.1032 -1.3955 5 1 1.4932 2.6223 0.7960 6 1 3.5863 1.4138 0.5993 7 6 2.0084 -1.2113 0.0005 8 1 3.0493 -1.2340 -0.2865 9 6 1.3537 -2.4039 0.3762 10 6 1.8227 -3.6468 -0.0931 11 6 1.1850 -4.7947 0.2734 12 6 0.0706 -4.7408 1.1117 13 7 -0.5743 -5.9140 1.4804 14 6 -1.7447 -5.8614 2.3598 15 1 -1.6204 -5.0549 3.0824 16 6 -2.9813 -5.6111 1.5357 17 7 -3.9470 -4.7424 1.8326 18 6 -4.8730 -4.7752 0.9089 19 7 -4.5096 -5.6826 -0.0139 20 1 -4.9989 -5.9242 -0.8159 21 7 -3.2779 -6.2070 0.4107 22 6 -1.8863 -7.1926 3.1007 23 6 -2.0610 -8.3246 2.0864 24 6 -2.2032 -9.6557 2.8272 25 6 -3.4260 -9.6003 3.7452 26 6 -3.2513 -8.4683 4.7595 27 6 -3.1085 -7.1373 4.0195 28 6 -0.4027 -3.5127 1.5765 29 6 0.2282 -2.3571 1.2224 30 1 -0.4850 0.8400 -0.0004 31 1 2.6854 -3.6900 -0.7413 32 1 1.5432 -5.7482 -0.0858 33 1 -0.2501 -6.7684 1.1552 34 1 -5.7721 -4.1770 0.8907 35 1 -0.9920 -7.3736 3.6968 36 1 -2.9555 -8.1436 1.4902 37 1 -1.1901 -8.3638 1.4320 38 1 -1.3090 -9.8370 3.4236 39 1 -2.3272 -10.4623 2.1045 40 1 -3.5271 -10.5485 4.2733 41 1 -4.3202 -9.4191 3.1487 42 1 -2.3572 -8.6495 5.3559 43 1 -4.1226 -8.4286 5.4132 44 1 -2.9836 -6.3309 4.7421 45 1 -4.0031 -6.9561 3.4238 46 1 -1.2683 -3.4781 2.2213 47 1 -0.1367 -1.4079 1.5858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602615588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:27 Heat of formation + Delta-G solvation = 75.340035 kcal Electronic energy + Delta-G solvation = -27955.030105 eV Core-core repulsion = 24330.474126 eV Total energy + Delta-G solvation = -3624.555980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.04209 -40.26411 -39.30900 -36.81538 -35.12495 -33.45175 -32.61548 -31.72667 -31.47399 -31.31817 -30.11149 -27.34980 -25.91772 -23.83857 -23.30665 -23.15589 -22.67400 -22.12711 -20.98229 -20.09565 -19.15714 -19.06216 -17.98484 -16.92814 -16.83248 -16.32901 -16.22543 -15.66005 -15.62767 -15.28055 -15.03632 -14.74114 -14.53101 -14.42518 -14.28724 -13.86623 -13.64855 -13.28624 -13.11222 -13.05011 -12.96469 -12.72868 -12.60438 -12.48923 -12.29189 -12.00605 -11.96443 -11.58690 -11.35295 -11.27214 -11.18458 -11.08608 -10.94280 -10.90338 -10.84469 -10.47213 -10.36464 -9.40330 -8.56054 -8.21785 -6.02089 0.79035 1.10229 1.18398 1.39233 1.52168 1.58156 1.93866 2.00529 2.26989 2.76570 2.85008 3.32414 3.71863 3.79737 3.86273 3.89530 3.93997 4.18459 4.34009 4.37824 4.44121 4.45863 4.50449 4.60004 4.61994 4.67350 4.78174 4.79056 5.00881 5.05005 5.12972 5.18505 5.21362 5.26695 5.30076 5.31342 5.39036 5.40282 5.44168 5.45903 5.48563 5.65470 5.67235 5.80406 5.96170 6.18865 6.32940 6.38561 6.64261 6.84211 7.07823 7.11628 7.25130 7.29426 8.47978 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.003188 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.159452 B = 8780.198587 C = 9408.002121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.506 4.506 8 H 0.069 0.931 9 C 0.039 3.961 10 C -0.197 4.197 11 C -0.160 4.160 12 C 0.112 3.888 13 N -0.730 5.730 14 C 0.254 3.746 15 H 0.078 0.922 16 C 0.219 3.781 17 N -0.576 5.576 18 C 0.262 3.738 19 N -0.483 5.483 20 H 0.453 0.547 21 N -0.325 5.325 22 C -0.077 4.077 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.113 4.113 27 C -0.103 4.103 28 C -0.167 4.167 29 C -0.143 4.143 30 H 0.281 0.719 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.398 0.602 34 H 0.264 0.736 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.045 0.955 46 H 0.096 0.904 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.083 -15.792 5.709 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.537 4.537 8 H 0.087 0.913 9 C 0.037 3.963 10 C -0.217 4.217 11 C -0.182 4.182 12 C 0.013 3.987 13 N -0.365 5.365 14 C 0.144 3.856 15 H 0.096 0.904 16 C -0.066 4.066 17 N -0.305 5.305 18 C -0.036 4.036 19 N -0.203 5.203 20 H 0.301 0.699 21 N -0.154 5.154 22 C -0.097 4.097 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.153 4.153 26 C -0.150 4.150 27 C -0.141 4.141 28 C -0.189 4.189 29 C -0.163 4.163 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.235 0.765 34 H 0.280 0.720 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.114 0.886 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.921 -15.888 5.776 20.686 hybrid contribution -0.221 0.996 -1.145 1.534 sum -12.142 -14.892 4.631 19.765 Atomic orbital electron populations 1.69941 1.08852 1.29716 1.38506 1.26645 0.95431 1.04202 0.91805 0.85284 0.79215 0.76578 0.79109 1.18997 1.19302 1.18377 1.19597 0.98006 0.92735 1.43341 0.91287 1.17804 0.93384 0.93098 0.92063 1.20742 1.03175 0.92797 1.04950 1.20073 0.97825 0.97694 1.02630 1.17412 0.94867 0.86348 1.00062 1.43835 1.30942 1.05300 1.56433 1.19024 0.78706 0.99341 0.88562 0.90369 1.25038 0.97062 0.91843 0.92619 1.70382 1.04514 1.24617 1.31014 1.26883 0.99928 0.91946 0.84850 1.48130 1.16997 1.31974 1.23171 0.69910 1.77863 0.98324 1.24077 1.15162 1.21337 1.00196 0.91700 0.96489 1.21566 1.01807 0.94372 0.97072 1.21509 0.98844 0.96206 0.98575 1.21512 0.97629 0.98860 0.97307 1.21493 1.02461 0.93456 0.97615 1.21422 0.96399 0.98497 0.97819 1.20208 1.01551 0.92061 1.05085 1.20810 0.99003 0.96466 1.00018 0.90852 0.88399 0.86462 0.76524 0.72029 0.88990 0.92365 0.92547 0.91202 0.91630 0.90695 0.93274 0.91044 0.91228 0.91938 0.93579 0.88570 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.43 10.98 21.82 0.24 -47.19 16 2 C 0.03 1.67 5.13 85.23 0.44 2.11 16 3 Si 0.98 41.04 29.60 68.60 2.03 43.07 16 4 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.51 -29.15 9.03 23.38 0.21 -28.94 16 8 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 9 C 0.04 2.26 5.57 -21.27 -0.12 2.14 16 10 C -0.20 -10.16 9.74 22.47 0.22 -9.94 16 11 C -0.16 -7.31 9.82 22.14 0.22 -7.09 16 12 C 0.11 5.00 6.64 38.67 0.26 5.25 16 13 N -0.73 -25.75 5.11 -322.10 -1.64 -27.39 16 14 C 0.25 8.11 2.05 44.25 0.09 8.20 16 15 H 0.08 2.82 6.46 -2.39 -0.02 2.81 16 16 C 0.22 7.18 5.01 138.63 0.69 7.87 16 17 N -0.58 -18.20 11.18 -191.80 -2.14 -20.35 16 18 C 0.26 5.90 13.13 180.36 2.37 8.26 16 19 N -0.48 -10.97 7.45 -60.49 -0.45 -11.42 16 20 H 0.45 6.57 8.96 -213.10 -1.91 4.66 16 21 N -0.32 -10.11 10.98 -51.34 -0.56 -10.67 16 22 C -0.08 -1.87 2.18 -10.79 -0.02 -1.89 16 23 C -0.11 -2.47 4.64 30.59 0.14 -2.33 16 24 C -0.11 -1.97 5.92 30.59 0.18 -1.79 16 25 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 26 C -0.11 -1.89 5.92 30.58 0.18 -1.71 16 27 C -0.10 -2.27 4.96 30.58 0.15 -2.12 16 28 C -0.17 -8.37 9.06 22.15 0.20 -8.17 16 29 C -0.14 -8.08 8.63 22.48 0.19 -7.89 16 30 H 0.28 14.42 8.30 -92.71 -0.77 13.65 16 31 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.40 12.50 6.86 -92.71 -0.64 11.86 16 34 H 0.26 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 1.51 6.06 -2.38 -0.01 1.49 16 37 H 0.06 1.31 6.51 -2.39 -0.02 1.30 16 38 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.05 1.16 7.21 -2.39 -0.02 1.14 16 46 H 0.10 4.65 6.14 -2.91 -0.02 4.63 16 47 H 0.10 5.70 6.18 -2.91 -0.02 5.68 16 Total: -1.00 -72.52 369.85 1.51 -71.01 By element: Atomic # 1 Polarization: 44.17 SS G_CDS: -1.54 Total: 42.62 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 5.58 Total: -39.68 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -4.56 Total: -117.02 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -72.52 1.51 -71.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602615588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.349 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds