Wall clock time and date at job start Tue Mar 31 2020 14:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48496 * 109.47132 * 274.69290 * 3 2 1 5 5 H 1.48498 * 109.47120 * 34.69306 * 3 2 1 6 6 H 1.48498 * 109.46907 * 154.69371 * 3 2 1 7 7 C 1.39931 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99954 * 197.75490 * 7 2 1 9 9 C 1.41409 * 119.99669 * 17.75421 * 7 2 1 10 10 C 1.40782 * 120.20734 * 204.34728 * 9 7 2 11 11 C 1.37650 * 119.89392 * 179.97438 * 10 9 7 12 12 C 1.38517 * 120.32396 * 0.02961 * 11 10 9 13 13 C 1.39294 * 120.42665 * 359.94985 * 12 11 10 14 14 N 1.39686 * 119.95484 * 180.02562 * 13 12 11 15 15 C 1.46503 * 119.99487 * 0.02562 * 14 13 12 16 16 H 1.08996 * 109.47380 * 35.00417 * 15 14 13 17 17 C 1.50699 * 109.47064 * 274.99735 * 15 14 13 18 18 N 1.33238 * 125.52953 * 314.69348 * 17 15 14 19 19 C 1.30833 * 109.83107 * 179.85473 * 18 17 15 20 20 N 1.34432 * 108.07506 * 0.40826 * 19 18 17 21 21 H 0.97003 * 126.82138 * 179.79096 * 20 19 18 22 22 N 1.30713 * 125.52378 * 135.00326 * 17 15 14 23 23 C 1.52999 * 109.46684 * 155.00131 * 15 14 13 24 24 C 1.53000 * 109.47335 * 299.99804 * 23 15 14 25 25 C 1.52999 * 109.47335 * 179.97438 * 24 23 15 26 26 C 1.53006 * 109.46669 * 60.00115 * 25 24 23 27 27 C 1.53000 * 109.47370 * 299.99680 * 26 25 24 28 28 C 1.52998 * 109.46898 * 60.00114 * 27 26 25 29 29 C 1.38314 * 120.09517 * 0.27927 * 13 12 11 30 30 H 0.97003 * 120.00276 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.05370 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.83354 * 179.97438 * 11 10 9 33 33 H 1.08003 * 119.79044 * 179.97438 * 12 11 10 34 34 H 0.96996 * 120.00245 * 180.02562 * 14 13 12 35 35 H 1.07994 * 125.96597 * 180.19958 * 19 18 17 36 36 H 1.09000 * 109.47443 * 60.00207 * 23 15 14 37 37 H 1.09000 * 109.47184 * 300.00562 * 24 23 15 38 38 H 1.08997 * 109.46682 * 59.99782 * 24 23 15 39 39 H 1.09000 * 109.47443 * 300.00403 * 25 24 23 40 40 H 1.08994 * 109.46970 * 180.02562 * 25 24 23 41 41 H 1.09008 * 109.46629 * 179.97438 * 26 25 24 42 42 H 1.08996 * 109.47321 * 60.00331 * 26 25 24 43 43 H 1.09004 * 109.47165 * 300.00808 * 27 26 25 44 44 H 1.08997 * 109.46904 * 180.02562 * 27 26 25 45 45 H 1.08994 * 109.46905 * 179.97438 * 28 27 26 46 46 H 1.09008 * 109.47111 * 60.00209 * 28 27 26 47 47 H 1.07995 * 120.16430 * 179.71800 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3905 2.1037 -1.3953 5 1 1.4928 2.6220 0.7969 6 1 3.5859 1.4136 0.5985 7 6 2.0080 -1.2118 -0.0005 8 1 3.0494 -1.2341 0.2847 9 6 1.3515 -2.4071 -0.3745 10 6 1.8272 -3.6500 0.0845 11 6 1.1829 -4.8095 -0.2831 12 6 0.0680 -4.7600 -1.1036 13 6 -0.4145 -3.5376 -1.5652 14 7 -1.5398 -3.4991 -2.3918 15 6 -2.2121 -4.7440 -2.7721 16 1 -2.1659 -5.4499 -1.9430 17 6 -1.5268 -5.3374 -3.9760 18 7 -1.1523 -4.6650 -5.0636 19 6 -0.5841 -5.4795 -5.9153 20 7 -0.5927 -6.7133 -5.3818 21 1 -0.2426 -7.5233 -5.7846 22 7 -1.2085 -6.5964 -4.1249 23 6 -3.6749 -4.4505 -3.1111 24 6 -4.3707 -3.8480 -1.8890 25 6 -5.8334 -3.5540 -2.2281 26 6 -6.5359 -4.8538 -2.6258 27 6 -5.8402 -5.4563 -3.8480 28 6 -4.3775 -5.7502 -3.5088 29 6 0.2223 -2.3621 -1.2106 30 1 -0.4851 0.8400 0.0004 31 1 2.6959 -3.6937 0.7248 32 1 1.5490 -5.7625 0.0693 33 1 -0.4307 -5.6752 -1.3870 34 1 -1.8762 -2.6483 -2.7139 35 1 -0.1817 -5.2085 -6.8801 36 1 -3.7212 -3.7446 -3.9404 37 1 -4.3244 -4.5539 -1.0597 38 1 -3.8705 -2.9219 -1.6060 39 1 -5.8793 -2.8479 -3.0572 40 1 -6.3289 -3.1243 -1.3576 41 1 -7.5781 -4.6443 -2.8670 42 1 -6.4901 -5.5599 -1.7967 43 1 -5.8860 -4.7501 -4.6771 44 1 -6.3409 -6.3820 -4.1315 45 1 -3.8820 -6.1799 -4.3794 46 1 -4.3316 -6.4564 -2.6797 47 1 -0.1481 -1.4140 -1.5715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602682942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:41 Heat of formation + Delta-G solvation = 84.944945 kcal Electronic energy + Delta-G solvation = -27967.376655 eV Core-core repulsion = 24343.237175 eV Total energy + Delta-G solvation = -3624.139480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.93289 -38.98222 -37.53089 -35.22312 -33.40430 -32.20473 -31.54818 -30.75086 -30.50212 -29.35254 -27.77625 -25.33017 -24.95634 -22.65777 -22.55140 -21.87372 -20.94576 -20.24555 -19.59488 -19.32459 -18.12814 -17.09428 -16.18959 -15.46304 -15.22882 -14.93375 -14.69562 -14.59216 -14.29792 -14.25499 -14.04254 -13.89273 -12.86897 -12.81998 -12.52893 -12.19893 -12.12737 -12.04934 -11.93071 -11.79445 -11.51488 -11.16689 -11.07888 -11.00061 -10.94262 -10.52085 -10.45113 -10.29477 -10.20244 -9.99969 -9.91977 -9.75001 -9.61380 -9.41317 -9.31146 -9.22464 -8.76169 -7.23190 -6.66506 -6.12399 -4.23847 1.78416 2.78769 2.92556 3.12750 3.14591 3.18461 3.30427 3.40792 4.03392 4.22701 4.28128 4.71072 4.77945 4.78677 4.82532 5.00861 5.18011 5.25443 5.35726 5.39082 5.55431 5.57216 5.60350 5.68910 5.81877 5.92948 5.95822 6.04585 6.16041 6.19609 6.21369 6.30832 6.34722 6.42290 6.49427 6.57379 6.60400 6.69325 6.93921 7.13837 7.17823 7.21060 7.45443 7.51532 7.87080 8.03347 8.17625 8.24327 8.32130 8.56174 8.77536 8.90887 9.08495 9.19432 10.32672 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.003875 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.694763 B = 7224.402015 C = 8474.708139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.079 3.921 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.257 4.257 11 C -0.067 4.067 12 C -0.296 4.296 13 C 0.218 3.782 14 N -0.735 5.735 15 C 0.257 3.743 16 H 0.095 0.905 17 C 0.232 3.768 18 N -0.525 5.525 19 C 0.250 3.750 20 N -0.492 5.492 21 H 0.436 0.564 22 N -0.315 5.315 23 C -0.083 4.083 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.115 4.115 28 C -0.109 4.109 29 C -0.225 4.225 30 H 0.277 0.723 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.395 0.605 35 H 0.216 0.784 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 -8.930 -10.940 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.135 3.865 10 C -0.278 4.278 11 C -0.086 4.086 12 C -0.319 4.319 13 C 0.119 3.881 14 N -0.367 5.367 15 C 0.146 3.854 16 H 0.113 0.887 17 C -0.053 4.053 18 N -0.252 5.252 19 C -0.050 4.050 20 N -0.210 5.210 21 H 0.281 0.719 22 N -0.145 5.145 23 C -0.103 4.103 24 C -0.149 4.149 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.153 4.153 28 C -0.147 4.147 29 C -0.249 4.249 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.229 0.771 35 H 0.232 0.768 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.394 -9.086 -10.388 17.277 hybrid contribution 0.863 0.475 -0.792 1.264 sum -9.531 -8.611 -11.180 17.028 Atomic orbital electron populations 1.69862 1.07430 1.28669 1.35783 1.25843 0.94661 1.00950 0.92359 0.86397 0.80676 0.81163 0.79000 1.19498 1.20438 1.18725 1.19550 0.98004 0.91336 1.40687 0.90703 1.17308 0.90162 0.91761 0.87222 1.20850 1.04743 0.92966 1.09207 1.20257 0.95177 0.96154 0.96981 1.19915 1.04311 0.94437 1.13225 1.17616 0.86251 0.94276 0.89918 1.44253 1.31653 1.05370 1.55383 1.18910 0.89033 0.88185 0.89259 0.88689 1.25270 0.96780 0.87221 0.96001 1.70377 1.18459 1.33800 1.02584 1.26061 0.97270 0.81740 0.99923 1.48120 1.47492 1.10714 1.14646 0.71931 1.77987 1.18623 1.20276 0.97564 1.21311 0.92022 0.97851 0.99098 1.21536 0.94641 1.01847 0.96854 1.21527 0.95804 0.97104 1.01109 1.21549 0.98607 0.97505 0.98026 1.21494 0.95483 1.00328 0.97991 1.21496 0.95048 0.96842 1.01283 1.20709 1.02225 0.95077 1.06841 0.91249 0.89537 0.89876 0.89663 0.77061 0.76762 0.90359 0.91759 0.90676 0.92121 0.91997 0.92461 0.92020 0.92200 0.92382 0.92479 0.91691 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.79 10.96 55.55 0.61 -20.18 16 2 C 0.08 2.04 5.14 -17.35 -0.09 1.95 16 3 Si 0.90 19.21 29.60 -169.99 -5.03 14.18 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 7 C -0.47 -12.81 9.05 -37.74 -0.34 -13.15 16 8 H 0.07 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.14 3.84 5.57 -106.85 -0.60 3.24 16 10 C -0.26 -6.69 9.79 -38.84 -0.38 -7.07 16 11 C -0.07 -1.61 10.02 -39.69 -0.40 -2.01 16 12 C -0.30 -7.01 9.16 -39.09 -0.36 -7.37 16 13 C 0.22 5.16 6.62 -83.86 -0.56 4.60 16 14 N -0.73 -14.29 4.53 -53.34 -0.24 -14.53 16 15 C 0.26 4.28 1.80 -69.08 -0.12 4.16 16 16 H 0.10 1.70 6.47 -51.93 -0.34 1.37 16 17 C 0.23 3.89 5.57 -156.86 -0.87 3.02 16 18 N -0.52 -8.51 11.18 -11.98 -0.13 -8.64 16 19 C 0.25 2.95 13.13 -90.65 -1.19 1.76 16 20 N -0.49 -5.70 7.45 29.53 0.22 -5.48 16 21 H 0.44 3.23 8.96 -182.33 -1.63 1.60 16 22 N -0.32 -4.99 12.78 32.42 0.41 -4.58 16 23 C -0.08 -1.12 1.81 -90.62 -0.16 -1.28 16 24 C -0.11 -1.45 5.05 -26.73 -0.13 -1.59 16 25 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 26 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 27 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 28 C -0.11 -1.31 4.96 -26.73 -0.13 -1.44 16 29 C -0.22 -5.96 8.53 -38.67 -0.33 -6.29 16 30 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 31 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 32 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.09 1.91 6.16 -52.48 -0.32 1.58 16 34 H 0.39 7.49 8.39 -40.82 -0.34 7.14 16 35 H 0.22 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.10 7.44 -51.93 -0.39 0.72 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.75 7.20 -51.93 -0.37 0.37 16 46 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 47 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 LS Contribution 376.23 15.07 5.67 5.67 Total: -1.00 -31.87 376.23 -12.98 -44.85 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -8.34 Total: 14.26 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -6.14 Total: -25.56 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.87 Total: -53.40 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.87 -12.98 -44.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602682942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.797 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds