Wall clock time and date at job start Tue Mar 31 2020 14:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47555 * 270.00285 * 3 2 1 5 5 H 1.48501 * 109.47005 * 30.00615 * 3 2 1 6 6 H 1.48497 * 109.47023 * 149.99913 * 3 2 1 7 7 C 1.39930 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99682 * 197.88582 * 7 2 1 9 9 C 1.41407 * 120.00521 * 17.89353 * 7 2 1 10 10 C 1.40783 * 120.20724 * 204.45432 * 9 7 2 11 11 C 1.37638 * 119.89466 * 179.97438 * 10 9 7 12 12 C 1.38523 * 120.32504 * 359.97438 * 11 10 9 13 13 C 1.39294 * 120.42523 * 359.97438 * 12 11 10 14 14 N 1.39679 * 119.95627 * 180.02562 * 13 12 11 15 15 C 1.46508 * 119.99870 * 359.97438 * 14 13 12 16 16 H 1.09003 * 109.47210 * 325.00392 * 15 14 13 17 17 C 1.50701 * 109.47158 * 85.00158 * 15 14 13 18 18 N 1.33242 * 125.52354 * 44.69107 * 17 15 14 19 19 C 1.30837 * 109.82591 * 179.85688 * 18 17 15 20 20 N 1.34425 * 108.07693 * 0.40898 * 19 18 17 21 21 H 0.97004 * 126.82694 * 179.72218 * 20 19 18 22 22 N 1.30712 * 125.52851 * 225.00412 * 17 15 14 23 23 C 1.52999 * 109.47093 * 205.00361 * 15 14 13 24 24 C 1.53001 * 109.46913 * 299.99488 * 23 15 14 25 25 C 1.52999 * 109.46913 * 179.97438 * 24 23 15 26 26 C 1.52999 * 109.47147 * 60.00626 * 25 24 23 27 27 C 1.53003 * 109.46946 * 299.99998 * 26 25 24 28 28 C 1.52999 * 109.47196 * 60.00032 * 27 26 25 29 29 C 1.38322 * 120.09251 * 0.02562 * 13 12 11 30 30 H 0.96999 * 120.00296 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.05416 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.84522 * 179.97438 * 11 10 9 33 33 H 1.08007 * 119.78938 * 179.72627 * 12 11 10 34 34 H 0.96996 * 120.00308 * 180.02562 * 14 13 12 35 35 H 1.07996 * 125.95826 * 180.19183 * 19 18 17 36 36 H 1.08992 * 109.47563 * 60.00029 * 23 15 14 37 37 H 1.08992 * 109.47448 * 300.00612 * 24 23 15 38 38 H 1.09007 * 109.46731 * 60.00492 * 24 23 15 39 39 H 1.09001 * 109.47696 * 300.00773 * 25 24 23 40 40 H 1.09003 * 109.47118 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.47556 * 179.97438 * 26 25 24 42 42 H 1.09007 * 109.47336 * 59.99702 * 26 25 24 43 43 H 1.09001 * 109.47045 * 299.99330 * 27 26 25 44 44 H 1.08999 * 109.46761 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.46720 * 180.02562 * 28 27 26 46 46 H 1.08992 * 109.47563 * 59.99929 * 28 27 26 47 47 H 1.08002 * 120.15768 * 180.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6526 0.7002 6 1 3.5398 1.4401 0.7000 7 6 2.0078 -1.2119 -0.0005 8 1 3.0487 -1.2346 0.2867 9 6 1.3521 -2.4067 -0.3773 10 6 1.8256 -3.6500 0.0831 11 6 1.1822 -4.8090 -0.2872 12 6 0.0696 -4.7587 -1.1110 13 6 -0.4110 -3.5358 -1.5734 14 7 -1.5339 -3.4965 -2.4032 15 6 -2.2051 -4.7410 -2.7870 16 1 -1.4642 -5.5317 -2.9055 17 6 -3.1898 -5.1318 -1.7152 18 7 -4.0428 -4.3067 -1.1095 19 6 -4.7546 -4.9688 -0.2339 20 7 -4.3563 -6.2525 -0.2576 21 1 -4.7010 -6.9783 0.2859 22 7 -3.3416 -6.3340 -1.2251 23 6 -2.9460 -4.5339 -4.1095 24 6 -3.9860 -3.4240 -3.9430 25 6 -4.7265 -3.2165 -5.2656 26 6 -5.4274 -4.5159 -5.6670 27 6 -4.3875 -5.6259 -5.8334 28 6 -3.6470 -5.8334 -4.5108 29 6 0.2223 -2.3604 -1.2122 30 1 -0.4850 0.8400 -0.0004 31 1 2.6924 -3.6944 0.7259 32 1 1.5463 -5.7624 0.0662 33 1 -0.4260 -5.6739 -1.3998 34 1 -1.8689 -2.6454 -2.7260 35 1 -5.5250 -4.5554 0.4000 36 1 -2.2339 -4.2512 -4.8846 37 1 -4.6981 -3.7067 -3.1678 38 1 -3.4866 -2.4981 -3.6575 39 1 -4.0140 -2.9337 -6.0406 40 1 -5.4671 -2.4255 -5.1472 41 1 -5.9554 -4.3680 -6.6091 42 1 -6.1399 -4.7988 -4.8921 43 1 -3.6750 -5.3430 -6.6084 44 1 -4.8868 -6.5515 -6.1198 45 1 -2.9059 -6.6238 -4.6295 46 1 -4.3594 -6.1162 -3.7359 47 1 -0.1497 -1.4116 -1.5698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602682943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:45 Heat of formation + Delta-G solvation = 90.085596 kcal Electronic energy + Delta-G solvation = -28157.316417 eV Core-core repulsion = 24533.399852 eV Total energy + Delta-G solvation = -3623.916564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93378 -38.98522 -37.53318 -35.20765 -33.40381 -32.14681 -31.53913 -30.69423 -30.52757 -29.34820 -27.73612 -25.34760 -24.90133 -22.91446 -22.36342 -21.87737 -20.95888 -20.40297 -19.71708 -18.98870 -18.00293 -17.05672 -16.20450 -15.51817 -15.31043 -14.94760 -14.73711 -14.55471 -14.29716 -14.16460 -14.02611 -13.48643 -13.26642 -12.80519 -12.68209 -12.20060 -12.12072 -11.99598 -11.89719 -11.59294 -11.54454 -11.16426 -11.07390 -11.02750 -10.94202 -10.59503 -10.44427 -10.34386 -10.18603 -9.96376 -9.73581 -9.71054 -9.57030 -9.40325 -9.29668 -9.22255 -8.76022 -7.23034 -6.65349 -6.12632 -4.23604 1.83491 2.83428 2.93193 3.14496 3.17704 3.18225 3.30605 3.41267 4.03557 4.24052 4.34311 4.70076 4.77873 4.78850 4.82737 4.96785 5.21521 5.26771 5.34464 5.40350 5.51796 5.55764 5.60253 5.69847 5.88183 5.90350 5.97491 6.03016 6.13399 6.18869 6.24353 6.33156 6.34904 6.41415 6.46718 6.57252 6.69131 6.74267 6.94031 7.16940 7.19964 7.21542 7.45621 7.51816 7.87455 8.03578 8.17928 8.24577 8.36901 8.56402 8.77827 8.91109 9.08726 9.19605 10.33310 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.003722 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.654263 B = 7520.814349 C = 8302.493649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.257 4.257 11 C -0.067 4.067 12 C -0.296 4.296 13 C 0.216 3.784 14 N -0.736 5.736 15 C 0.255 3.745 16 H 0.095 0.905 17 C 0.236 3.764 18 N -0.518 5.518 19 C 0.248 3.752 20 N -0.492 5.492 21 H 0.436 0.564 22 N -0.317 5.317 23 C -0.086 4.086 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.110 4.110 29 C -0.225 4.225 30 H 0.277 0.723 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.395 0.605 35 H 0.215 0.785 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.496 -8.211 -7.229 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.136 3.864 10 C -0.277 4.277 11 C -0.086 4.086 12 C -0.319 4.319 13 C 0.118 3.882 14 N -0.369 5.369 15 C 0.144 3.856 16 H 0.113 0.887 17 C -0.049 4.049 18 N -0.245 5.245 19 C -0.052 4.052 20 N -0.210 5.210 21 H 0.280 0.720 22 N -0.147 5.147 23 C -0.106 4.106 24 C -0.152 4.152 25 C -0.156 4.156 26 C -0.155 4.155 27 C -0.154 4.154 28 C -0.148 4.148 29 C -0.249 4.249 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.231 0.769 35 H 0.231 0.769 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.288 -8.435 -7.538 17.452 hybrid contribution -0.326 0.629 0.873 1.124 sum -13.614 -7.807 -6.665 17.051 Atomic orbital electron populations 1.69875 1.07415 1.28712 1.35581 1.25858 0.94651 1.00971 0.92412 0.86406 0.80549 0.81065 0.79189 1.19394 1.20510 1.18772 1.19544 0.98061 0.91346 1.40680 0.90675 1.17304 0.90121 0.91770 0.87254 1.20846 1.04795 0.92964 1.09137 1.20259 0.95214 0.96170 0.96940 1.19919 1.04459 0.94428 1.13093 1.17641 0.86097 0.94304 0.90175 1.44333 1.30554 1.05713 1.56308 1.18920 0.89653 0.89712 0.87293 0.88725 1.25163 0.95951 0.86169 0.97649 1.70416 1.09445 1.33718 1.10962 1.26082 0.98976 0.82278 0.97832 1.48100 1.29988 1.10487 1.32426 0.72002 1.77968 1.07554 1.22779 1.06358 1.21371 0.97427 0.96256 0.95529 1.21628 0.98067 0.98285 0.97262 1.21541 0.99310 0.96902 0.97857 1.21523 0.97793 0.95522 1.00691 1.21501 0.98055 0.98293 0.97512 1.21513 0.99358 0.96768 0.97151 1.20710 1.02415 0.94999 1.06776 0.91220 0.89526 0.89866 0.89647 0.76941 0.76855 0.89742 0.90312 0.91622 0.92190 0.92260 0.92516 0.92460 0.91918 0.92379 0.91781 0.92220 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.02 10.95 55.55 0.61 -20.41 16 2 C 0.08 2.03 5.14 -17.35 -0.09 1.94 16 3 Si 0.90 19.23 29.60 -169.99 -5.03 14.20 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.47 -12.84 9.05 -37.74 -0.34 -13.18 16 8 H 0.08 2.00 7.91 -52.48 -0.42 1.59 16 9 C 0.14 3.85 5.57 -106.85 -0.60 3.26 16 10 C -0.26 -6.70 9.79 -38.84 -0.38 -7.08 16 11 C -0.07 -1.62 10.01 -39.70 -0.40 -2.02 16 12 C -0.30 -7.04 9.17 -39.08 -0.36 -7.40 16 13 C 0.22 5.16 6.62 -83.86 -0.56 4.60 16 14 N -0.74 -14.42 5.14 -53.34 -0.27 -14.70 16 15 C 0.26 4.25 2.06 -69.08 -0.14 4.11 16 16 H 0.10 1.67 6.47 -51.93 -0.34 1.33 16 17 C 0.24 3.95 5.03 -156.85 -0.79 3.16 16 18 N -0.52 -8.45 9.38 -11.98 -0.11 -8.56 16 19 C 0.25 3.03 13.13 -90.65 -1.19 1.84 16 20 N -0.49 -5.87 7.45 29.53 0.22 -5.65 16 21 H 0.44 3.41 8.96 -182.33 -1.63 1.77 16 22 N -0.32 -5.08 12.78 32.42 0.41 -4.66 16 23 C -0.09 -1.14 2.18 -90.62 -0.20 -1.34 16 24 C -0.11 -1.49 4.64 -26.73 -0.12 -1.62 16 25 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 26 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 27 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 28 C -0.11 -1.30 4.96 -26.73 -0.13 -1.43 16 29 C -0.23 -6.00 8.53 -38.68 -0.33 -6.33 16 30 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 31 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.09 1.91 6.16 -52.48 -0.32 1.59 16 34 H 0.39 7.52 6.87 -40.82 -0.28 7.24 16 35 H 0.22 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.13 6.05 -51.93 -0.31 0.81 16 38 H 0.07 0.93 6.51 -51.92 -0.34 0.60 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.78 7.20 -51.93 -0.37 0.41 16 47 H 0.12 3.22 6.15 -52.49 -0.32 2.90 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -32.01 370.16 -12.82 -44.83 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -8.12 Total: 14.92 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -6.10 Total: -25.55 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.86 Total: -53.98 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.01 -12.82 -44.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602682943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.915 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds