Wall clock time and date at job start Tue Mar 31 2020 14:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47555 * 270.00285 * 3 2 1 5 5 H 1.48501 * 109.47005 * 30.00615 * 3 2 1 6 6 H 1.48497 * 109.47023 * 149.99913 * 3 2 1 7 7 C 1.39930 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99682 * 197.88582 * 7 2 1 9 9 C 1.41407 * 120.00521 * 17.89353 * 7 2 1 10 10 C 1.40783 * 120.20724 * 204.45432 * 9 7 2 11 11 C 1.37638 * 119.89466 * 179.97438 * 10 9 7 12 12 C 1.38523 * 120.32504 * 359.97438 * 11 10 9 13 13 C 1.39294 * 120.42523 * 359.97438 * 12 11 10 14 14 N 1.39679 * 119.95627 * 180.02562 * 13 12 11 15 15 C 1.46508 * 119.99870 * 359.97438 * 14 13 12 16 16 H 1.09003 * 109.47210 * 325.00392 * 15 14 13 17 17 C 1.50701 * 109.47158 * 85.00158 * 15 14 13 18 18 N 1.33242 * 125.52354 * 44.69107 * 17 15 14 19 19 C 1.30837 * 109.82591 * 179.85688 * 18 17 15 20 20 N 1.34425 * 108.07693 * 0.40898 * 19 18 17 21 21 H 0.97004 * 126.82694 * 179.72218 * 20 19 18 22 22 N 1.30712 * 125.52851 * 225.00412 * 17 15 14 23 23 C 1.52999 * 109.47093 * 205.00361 * 15 14 13 24 24 C 1.53001 * 109.46913 * 299.99488 * 23 15 14 25 25 C 1.52999 * 109.46913 * 179.97438 * 24 23 15 26 26 C 1.52999 * 109.47147 * 60.00626 * 25 24 23 27 27 C 1.53003 * 109.46946 * 299.99998 * 26 25 24 28 28 C 1.52999 * 109.47196 * 60.00032 * 27 26 25 29 29 C 1.38322 * 120.09251 * 0.02562 * 13 12 11 30 30 H 0.96999 * 120.00296 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.05416 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.84522 * 179.97438 * 11 10 9 33 33 H 1.08007 * 119.78938 * 179.72627 * 12 11 10 34 34 H 0.96996 * 120.00308 * 180.02562 * 14 13 12 35 35 H 1.07996 * 125.95826 * 180.19183 * 19 18 17 36 36 H 1.08992 * 109.47563 * 60.00029 * 23 15 14 37 37 H 1.08992 * 109.47448 * 300.00612 * 24 23 15 38 38 H 1.09007 * 109.46731 * 60.00492 * 24 23 15 39 39 H 1.09001 * 109.47696 * 300.00773 * 25 24 23 40 40 H 1.09003 * 109.47118 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.47556 * 179.97438 * 26 25 24 42 42 H 1.09007 * 109.47336 * 59.99702 * 26 25 24 43 43 H 1.09001 * 109.47045 * 299.99330 * 27 26 25 44 44 H 1.08999 * 109.46761 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.46720 * 180.02562 * 28 27 26 46 46 H 1.08992 * 109.47563 * 59.99929 * 28 27 26 47 47 H 1.08002 * 120.15768 * 180.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6526 0.7002 6 1 3.5398 1.4401 0.7000 7 6 2.0078 -1.2119 -0.0005 8 1 3.0487 -1.2346 0.2867 9 6 1.3521 -2.4067 -0.3773 10 6 1.8256 -3.6500 0.0831 11 6 1.1822 -4.8090 -0.2872 12 6 0.0696 -4.7587 -1.1110 13 6 -0.4110 -3.5358 -1.5734 14 7 -1.5339 -3.4965 -2.4032 15 6 -2.2051 -4.7410 -2.7870 16 1 -1.4642 -5.5317 -2.9055 17 6 -3.1898 -5.1318 -1.7152 18 7 -4.0428 -4.3067 -1.1095 19 6 -4.7546 -4.9688 -0.2339 20 7 -4.3563 -6.2525 -0.2576 21 1 -4.7010 -6.9783 0.2859 22 7 -3.3416 -6.3340 -1.2251 23 6 -2.9460 -4.5339 -4.1095 24 6 -3.9860 -3.4240 -3.9430 25 6 -4.7265 -3.2165 -5.2656 26 6 -5.4274 -4.5159 -5.6670 27 6 -4.3875 -5.6259 -5.8334 28 6 -3.6470 -5.8334 -4.5108 29 6 0.2223 -2.3604 -1.2122 30 1 -0.4850 0.8400 -0.0004 31 1 2.6924 -3.6944 0.7259 32 1 1.5463 -5.7624 0.0662 33 1 -0.4260 -5.6739 -1.3998 34 1 -1.8689 -2.6454 -2.7260 35 1 -5.5250 -4.5554 0.4000 36 1 -2.2339 -4.2512 -4.8846 37 1 -4.6981 -3.7067 -3.1678 38 1 -3.4866 -2.4981 -3.6575 39 1 -4.0140 -2.9337 -6.0406 40 1 -5.4671 -2.4255 -5.1472 41 1 -5.9554 -4.3680 -6.6091 42 1 -6.1399 -4.7988 -4.8921 43 1 -3.6750 -5.3430 -6.6084 44 1 -4.8868 -6.5515 -6.1198 45 1 -2.9059 -6.6238 -4.6295 46 1 -4.3594 -6.1162 -3.7359 47 1 -0.1497 -1.4116 -1.5698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602682943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:44 Heat of formation + Delta-G solvation = 73.089731 kcal Electronic energy + Delta-G solvation = -28158.053413 eV Core-core repulsion = 24533.399852 eV Total energy + Delta-G solvation = -3624.653560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.05013 -40.20431 -39.20944 -36.70155 -35.25177 -33.48385 -32.73191 -31.78303 -31.51916 -31.31423 -29.34191 -27.17521 -26.44285 -23.95114 -23.40567 -23.03476 -22.66441 -21.95965 -21.02327 -20.15353 -19.23812 -18.80006 -17.80898 -16.87371 -16.66147 -16.41368 -16.29202 -15.85177 -15.79061 -15.15830 -15.04104 -14.71892 -14.53080 -14.42517 -14.34118 -14.03002 -13.48784 -13.13884 -13.04759 -13.01948 -12.95924 -12.74625 -12.59722 -12.48875 -12.05874 -12.02241 -11.97145 -11.54736 -11.39078 -11.34994 -11.22382 -11.09494 -10.90454 -10.83194 -10.80302 -10.58368 -10.48368 -9.25112 -8.59913 -7.95645 -6.30630 0.75810 1.09129 1.32149 1.39812 1.52842 1.58914 1.91493 2.02196 2.24693 2.76567 2.83340 3.28606 3.70195 3.74124 3.86704 3.88073 3.97883 4.24476 4.29785 4.38731 4.40948 4.48921 4.57079 4.61092 4.68143 4.70463 4.78684 4.82264 4.97849 5.03063 5.17638 5.19454 5.21632 5.28214 5.30580 5.32775 5.39306 5.40347 5.43909 5.45272 5.47884 5.60906 5.68298 5.95829 6.09534 6.21891 6.24082 6.35940 6.58155 6.94264 7.02157 7.06946 7.24437 7.27502 8.40414 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.003722 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.654263 B = 7520.814349 C = 8302.493649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.039 3.961 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.071 0.929 9 C 0.111 3.889 10 C -0.283 4.283 11 C -0.064 4.064 12 C -0.300 4.300 13 C 0.225 3.775 14 N -0.728 5.728 15 C 0.253 3.747 16 H 0.083 0.917 17 C 0.224 3.776 18 N -0.559 5.559 19 C 0.258 3.742 20 N -0.477 5.477 21 H 0.454 0.546 22 N -0.342 5.342 23 C -0.078 4.078 24 C -0.108 4.108 25 C -0.115 4.115 26 C -0.114 4.114 27 C -0.112 4.112 28 C -0.102 4.102 29 C -0.252 4.252 30 H 0.285 0.715 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.396 0.604 35 H 0.262 0.738 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.030 -8.546 -7.847 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.108 3.892 10 C -0.304 4.304 11 C -0.083 4.083 12 C -0.323 4.323 13 C 0.125 3.875 14 N -0.360 5.360 15 C 0.143 3.857 16 H 0.100 0.900 17 C -0.060 4.060 18 N -0.288 5.288 19 C -0.040 4.040 20 N -0.197 5.197 21 H 0.303 0.697 22 N -0.172 5.172 23 C -0.098 4.098 24 C -0.146 4.146 25 C -0.153 4.153 26 C -0.152 4.152 27 C -0.150 4.150 28 C -0.141 4.141 29 C -0.276 4.276 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.232 0.768 35 H 0.278 0.722 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.870 -8.825 -8.157 19.118 hybrid contribution 0.018 0.608 1.110 1.265 sum -14.852 -8.217 -7.047 18.378 Atomic orbital electron populations 1.69935 1.08893 1.30129 1.35550 1.26704 0.95445 1.04231 0.91256 0.85252 0.79060 0.76147 0.79484 1.18660 1.19241 1.18408 1.19798 0.98238 0.92693 1.42648 0.91039 1.17684 0.90922 0.92730 0.87861 1.20989 1.05727 0.93302 1.10371 1.20580 0.94765 0.96811 0.96143 1.20126 1.04436 0.94850 1.12878 1.17709 0.86609 0.93602 0.89628 1.44364 1.29457 1.07153 1.55021 1.19061 0.89745 0.87702 0.89183 0.89950 1.24906 0.96465 0.86662 0.97995 1.70373 1.10656 1.35069 1.12672 1.26945 0.98496 0.81891 0.96689 1.48003 1.28838 1.11324 1.31541 0.69750 1.77856 1.09082 1.22699 1.07573 1.21335 0.97358 0.97417 0.93676 1.21530 0.97676 0.97087 0.98312 1.21523 0.99386 0.97853 0.96524 1.21502 0.97598 0.94673 1.01391 1.21496 0.98103 0.99076 0.96311 1.21443 0.99058 0.95635 0.97916 1.20623 1.03412 0.95284 1.08308 0.90443 0.89218 0.86999 0.88164 0.76840 0.72202 0.89490 0.91484 0.93507 0.91659 0.91737 0.90693 0.92971 0.91176 0.90975 0.91728 0.93475 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.65 10.95 21.82 0.24 -44.41 16 2 C 0.04 2.04 5.14 85.25 0.44 2.48 16 3 Si 0.98 39.83 29.60 68.60 2.03 41.86 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 7 C -0.50 -28.78 9.05 23.46 0.21 -28.57 16 8 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.11 6.41 5.57 -21.31 -0.12 6.29 16 10 C -0.28 -15.18 9.79 22.75 0.22 -14.96 16 11 C -0.06 -3.12 10.01 22.20 0.22 -2.89 16 12 C -0.30 -14.32 9.17 22.59 0.21 -14.12 16 13 C 0.23 11.02 6.62 38.16 0.25 11.27 16 14 N -0.73 -29.23 5.14 -322.66 -1.66 -30.89 16 15 C 0.25 8.46 2.06 44.24 0.09 8.56 16 16 H 0.08 2.93 6.47 -2.39 -0.02 2.92 16 17 C 0.22 7.45 5.03 138.63 0.70 8.15 16 18 N -0.56 -17.86 9.38 -191.80 -1.80 -19.66 16 19 C 0.26 5.79 13.13 180.36 2.37 8.16 16 20 N -0.48 -10.47 7.45 -60.49 -0.45 -10.92 16 21 H 0.45 6.03 8.96 -213.09 -1.91 4.12 16 22 N -0.34 -10.62 12.78 -51.33 -0.66 -11.27 16 23 C -0.08 -2.04 2.18 -10.79 -0.02 -2.07 16 24 C -0.11 -2.79 4.64 30.59 0.14 -2.65 16 25 C -0.12 -2.32 5.92 30.59 0.18 -2.14 16 26 C -0.11 -1.99 5.92 30.59 0.18 -1.81 16 27 C -0.11 -1.98 5.92 30.59 0.18 -1.79 16 28 C -0.10 -2.30 4.96 30.60 0.15 -2.15 16 29 C -0.25 -13.99 8.53 22.86 0.20 -13.79 16 30 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 31 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 32 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.10 4.45 6.16 -2.91 -0.02 4.43 16 34 H 0.40 15.66 6.87 -92.71 -0.64 15.02 16 35 H 0.26 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.07 1.91 6.05 -2.39 -0.01 1.89 16 38 H 0.05 1.36 6.51 -2.38 -0.02 1.34 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.05 1.19 7.20 -2.39 -0.02 1.17 16 47 H 0.10 5.84 6.15 -2.91 -0.02 5.82 16 Total: -1.00 -71.61 370.16 1.76 -69.84 By element: Atomic # 1 Polarization: 49.02 SS G_CDS: -1.54 Total: 47.47 kcal Atomic # 6 Polarization: -47.64 SS G_CDS: 5.60 Total: -42.03 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -4.33 Total: -117.15 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -71.61 1.76 -69.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602682943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.934 kcal (2) G-P(sol) polarization free energy of solvation -71.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds