Wall clock time and date at job start Tue Mar 31 2020 14:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99950 * 2 1 4 4 H 1.48496 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47308 * 300.00011 * 3 2 1 6 6 H 1.48506 * 109.47139 * 60.00145 * 3 2 1 7 7 C 1.37879 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00329 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99700 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.46959 * 111.00224 * 169.99947 * 10 9 7 12 12 C 1.53052 * 109.36490 * 183.18447 * 11 10 9 13 13 N 1.46962 * 109.36438 * 301.60008 * 12 11 10 14 14 C 1.46898 * 110.99578 * 183.18785 * 13 12 11 15 15 C 1.50702 * 109.46843 * 170.00022 * 14 13 12 16 16 C 1.34857 * 126.48947 * 94.97859 * 15 14 13 17 17 N 1.33785 * 108.38363 * 179.97438 * 16 15 14 18 18 C 1.31443 * 109.25747 * 359.97438 * 17 16 15 19 19 C 1.47916 * 125.83564 * 179.97438 * 18 17 16 20 20 C 1.39537 * 120.13761 * 179.75445 * 19 18 17 21 21 C 1.37970 * 119.85355 * 179.72431 * 20 19 18 22 22 C 1.38343 * 120.14000 * 0.55414 * 21 20 19 23 23 C 1.38352 * 120.28809 * 359.72025 * 22 21 20 24 24 C 1.37967 * 120.13864 * 0.02562 * 23 22 21 25 25 N 1.36423 * 108.32636 * 0.23040 * 18 17 16 26 26 H 0.96994 * 126.49630 * 179.76738 * 25 18 17 27 27 C 1.46946 * 110.88036 * 59.32123 * 13 12 11 28 28 C 1.46962 * 110.99968 * 293.79860 * 10 9 7 29 29 H 0.97000 * 120.00025 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47383 * 59.99632 * 9 7 2 31 31 H 1.09000 * 109.46881 * 299.99447 * 9 7 2 32 32 H 1.08996 * 109.48653 * 63.21977 * 11 10 9 33 33 H 1.08994 * 109.48732 * 303.15359 * 11 10 9 34 34 H 1.08995 * 109.48716 * 181.62728 * 12 11 10 35 35 H 1.09005 * 109.48611 * 61.56426 * 12 11 10 36 36 H 1.09002 * 109.47651 * 49.99837 * 14 13 12 37 37 H 1.09003 * 109.47389 * 290.00094 * 14 13 12 38 38 H 1.07996 * 125.80712 * 359.97031 * 16 15 14 39 39 H 1.08000 * 120.07269 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.92789 * 180.29288 * 21 20 19 41 41 H 1.08001 * 119.85876 * 179.69823 * 22 21 20 42 42 H 1.07996 * 119.93072 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.06895 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.49579 * 60.64431 * 27 13 12 45 45 H 1.09008 * 109.48963 * 180.71548 * 27 13 12 46 46 H 1.09009 * 109.48549 * 296.78156 * 28 10 9 47 47 H 1.08998 * 109.48761 * 56.81768 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5210 -4.8940 0.2388 12 6 2.5565 -6.0187 0.3103 13 7 3.3195 -6.0592 -0.9451 14 6 4.2741 -7.1757 -0.9451 15 6 4.8581 -7.3373 -2.3249 16 6 6.0181 -6.8139 -2.7711 17 7 6.1855 -7.1843 -4.0457 18 6 5.1668 -7.9265 -4.4188 19 6 4.9790 -8.5302 -5.7560 20 6 3.8496 -9.3051 -6.0225 21 6 3.6775 -9.8608 -7.2736 22 6 4.6273 -9.6604 -8.2593 23 6 5.7521 -8.8978 -7.9998 24 6 5.9334 -8.3324 -6.7544 25 7 4.3096 -8.0400 -3.3636 26 1 3.4712 -8.5277 -3.3513 27 6 4.0042 -4.7810 -1.1832 28 6 2.9687 -3.6562 -1.2548 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 0.8254 -5.0915 -0.5768 33 1 0.9735 -4.8434 1.1799 34 1 2.0486 -6.9717 0.4582 35 1 3.2357 -5.8352 1.1429 36 1 3.7602 -8.0932 -0.6583 37 1 5.0740 -6.9699 -0.2338 38 1 6.6965 -6.2001 -2.1972 39 1 3.1098 -9.4663 -5.2523 40 1 2.8014 -10.4568 -7.4826 41 1 4.4903 -10.1015 -9.2356 42 1 6.4897 -8.7448 -8.7736 43 1 6.8117 -7.7369 -6.5532 44 1 4.6998 -4.5834 -0.3677 45 1 4.5517 -4.8315 -2.1245 46 1 2.2895 -3.8396 -2.0874 47 1 3.4762 -2.7030 -1.4028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602747547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:14 Heat of formation + Delta-G solvation = 94.792022 kcal Electronic energy + Delta-G solvation = -26596.109988 eV Core-core repulsion = 22972.397510 eV Total energy + Delta-G solvation = -3623.712478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.18105 -39.21274 -38.68610 -35.31647 -32.86566 -32.68712 -32.17161 -31.16334 -30.52575 -29.80617 -27.74523 -25.84150 -24.00336 -23.42259 -23.00198 -22.55957 -21.38231 -21.03443 -20.43099 -19.18718 -18.20643 -16.61286 -16.32714 -16.10216 -15.67405 -15.22347 -14.99866 -14.72698 -14.49194 -14.41275 -14.23295 -13.95927 -13.78576 -13.62731 -13.44122 -13.29172 -12.96294 -12.70438 -12.24879 -12.02282 -11.76457 -11.65606 -11.40921 -11.20650 -10.88506 -10.77050 -10.66921 -10.43845 -10.33985 -10.14926 -10.11727 -9.72666 -9.70803 -9.28810 -9.17341 -8.44935 -8.30500 -7.97458 -7.24677 -6.02929 -4.04253 0.62615 1.07687 2.01676 2.81831 2.95605 3.31273 3.38641 3.43625 3.65508 4.04155 4.10922 4.42588 4.49806 4.62349 4.67860 4.82072 4.90912 4.97203 5.00694 5.14785 5.23081 5.26785 5.32867 5.39979 5.44582 5.52249 5.52575 5.69966 5.73728 5.79865 5.89370 5.99412 6.06623 6.12405 6.16547 6.17879 6.18888 6.38480 6.56780 6.59464 6.60486 6.69572 7.09335 7.11268 7.18980 7.32770 7.35998 7.79957 7.88294 8.08066 8.19445 8.54426 9.03572 9.60146 11.08018 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.002346 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.076672 B =11929.916737 C =12539.610958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.062 3.938 13 N -0.539 5.539 14 C 0.124 3.876 15 C 0.010 3.990 16 C -0.017 4.017 17 N -0.470 5.470 18 C 0.235 3.765 19 C -0.006 4.006 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.081 4.081 25 N -0.550 5.550 26 H 0.419 0.581 27 C 0.057 3.943 28 C 0.069 3.931 29 H 0.260 0.740 30 H -0.009 1.009 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.171 0.829 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.137 0.863 44 H 0.041 0.959 45 H 0.074 0.926 46 H 0.026 0.974 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 -22.840 -10.710 26.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.072 4.072 12 C -0.066 4.066 13 N -0.264 5.264 14 C -0.005 4.005 15 C -0.107 4.107 16 C -0.168 4.168 17 N -0.188 5.188 18 C -0.024 4.024 19 C -0.008 4.008 20 C -0.133 4.133 21 C -0.134 4.134 22 C -0.135 4.135 23 C -0.136 4.136 24 C -0.100 4.100 25 N -0.152 5.152 26 H 0.257 0.743 27 C -0.071 4.071 28 C -0.060 4.060 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.188 0.812 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.155 0.845 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.044 0.956 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.504 -22.450 -11.140 26.804 hybrid contribution -0.883 0.569 0.580 1.200 sum 8.620 -21.881 -10.560 25.780 Atomic orbital electron populations 1.69969 1.06071 1.26657 1.51144 1.24997 0.94870 0.99349 0.95458 0.86450 0.80104 0.83429 0.77500 1.19631 1.21098 1.21023 1.21189 0.93495 0.89922 1.49871 0.91848 1.19704 0.90048 0.87345 0.96071 1.62299 1.28093 1.02676 1.33250 1.22053 0.94662 0.90049 1.00473 1.22172 0.96122 0.98640 0.89678 1.62216 1.25482 1.03449 1.35280 1.20450 0.95081 0.95615 0.89329 1.21203 0.96608 1.01206 0.91691 1.22116 0.97634 1.04886 0.92171 1.70338 1.22838 1.12866 1.12804 1.21152 0.89282 1.02573 0.89398 1.17615 0.95952 0.98128 0.89110 1.21059 0.96678 0.97945 0.97635 1.21005 0.99450 1.00072 0.92899 1.21275 0.94300 0.98577 0.99320 1.21151 0.98008 0.97666 0.96760 1.21222 0.98624 0.98306 0.91878 1.43188 1.20466 1.41053 1.10530 0.74266 1.22299 0.96168 0.88038 1.00563 1.21976 0.95397 0.97510 0.91114 0.92990 0.99140 0.95218 0.95285 0.90911 0.91242 0.93941 0.90179 0.91958 0.81151 0.86419 0.85611 0.85811 0.85438 0.84520 0.94053 0.90776 0.95576 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.28 8.47 -34.44 -0.29 -14.57 16 8 H 0.06 1.77 7.13 -52.49 -0.37 1.40 16 9 C 0.19 5.08 4.72 -4.98 -0.02 5.06 16 10 N -0.54 -11.64 4.70 -235.91 -1.11 -12.75 16 11 C 0.06 1.01 5.61 -3.76 -0.02 0.99 16 12 C 0.06 0.87 5.61 -3.76 -0.02 0.85 16 13 N -0.54 -7.49 4.70 -235.91 -1.11 -8.60 16 14 C 0.12 1.34 5.52 -4.98 -0.03 1.31 16 15 C 0.01 0.12 5.98 -81.54 -0.49 -0.37 16 16 C -0.02 -0.22 10.67 -17.90 -0.19 -0.41 16 17 N -0.47 -6.58 10.88 -11.21 -0.12 -6.70 16 18 C 0.24 2.90 7.77 -154.66 -1.20 1.70 16 19 C -0.01 -0.07 5.87 -104.97 -0.62 -0.68 16 20 C -0.11 -0.98 9.70 -39.20 -0.38 -1.36 16 21 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 22 C -0.12 -0.83 10.04 -39.50 -0.40 -1.23 16 23 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 24 C -0.08 -0.80 9.69 -39.20 -0.38 -1.18 16 25 N -0.55 -5.94 6.08 -6.85 -0.04 -5.98 16 26 H 0.42 3.47 8.09 -40.82 -0.33 3.14 16 27 C 0.06 0.91 5.41 -3.77 -0.02 0.89 16 28 C 0.07 1.37 5.43 -3.76 -0.02 1.35 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 31 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 34 H 0.07 0.80 8.07 -51.93 -0.42 0.39 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.72 8.03 -51.93 -0.42 0.31 16 37 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.12 0.80 7.18 -52.49 -0.38 0.42 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.14 1.39 7.84 -52.49 -0.41 0.98 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.15 6.39 -51.92 -0.33 0.82 16 46 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 47 H 0.09 1.87 6.79 -51.93 -0.35 1.52 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -32.68 381.47 -13.10 -45.78 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.21 Total: 0.66 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -4.97 Total: -8.78 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -1.65 Total: -60.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.68 -13.10 -45.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602747547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.567 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds