Wall clock time and date at job start Tue Mar 31 2020 14:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99950 * 2 1 4 4 H 1.48496 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47308 * 300.00011 * 3 2 1 6 6 H 1.48506 * 109.47139 * 60.00145 * 3 2 1 7 7 C 1.37879 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00329 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99700 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.46959 * 111.00224 * 169.99947 * 10 9 7 12 12 C 1.53052 * 109.36490 * 183.18447 * 11 10 9 13 13 N 1.46962 * 109.36438 * 301.60008 * 12 11 10 14 14 C 1.46898 * 110.99578 * 183.18785 * 13 12 11 15 15 C 1.50702 * 109.46843 * 170.00022 * 14 13 12 16 16 C 1.34857 * 126.48947 * 94.97859 * 15 14 13 17 17 N 1.33785 * 108.38363 * 179.97438 * 16 15 14 18 18 C 1.31443 * 109.25747 * 359.97438 * 17 16 15 19 19 C 1.47916 * 125.83564 * 179.97438 * 18 17 16 20 20 C 1.39537 * 120.13761 * 179.75445 * 19 18 17 21 21 C 1.37970 * 119.85355 * 179.72431 * 20 19 18 22 22 C 1.38343 * 120.14000 * 0.55414 * 21 20 19 23 23 C 1.38352 * 120.28809 * 359.72025 * 22 21 20 24 24 C 1.37967 * 120.13864 * 0.02562 * 23 22 21 25 25 N 1.36423 * 108.32636 * 0.23040 * 18 17 16 26 26 H 0.96994 * 126.49630 * 179.76738 * 25 18 17 27 27 C 1.46946 * 110.88036 * 59.32123 * 13 12 11 28 28 C 1.46962 * 110.99968 * 293.79860 * 10 9 7 29 29 H 0.97000 * 120.00025 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47383 * 59.99632 * 9 7 2 31 31 H 1.09000 * 109.46881 * 299.99447 * 9 7 2 32 32 H 1.08996 * 109.48653 * 63.21977 * 11 10 9 33 33 H 1.08994 * 109.48732 * 303.15359 * 11 10 9 34 34 H 1.08995 * 109.48716 * 181.62728 * 12 11 10 35 35 H 1.09005 * 109.48611 * 61.56426 * 12 11 10 36 36 H 1.09002 * 109.47651 * 49.99837 * 14 13 12 37 37 H 1.09003 * 109.47389 * 290.00094 * 14 13 12 38 38 H 1.07996 * 125.80712 * 359.97031 * 16 15 14 39 39 H 1.08000 * 120.07269 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.92789 * 180.29288 * 21 20 19 41 41 H 1.08001 * 119.85876 * 179.69823 * 22 21 20 42 42 H 1.07996 * 119.93072 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.06895 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.49579 * 60.64431 * 27 13 12 45 45 H 1.09008 * 109.48963 * 180.71548 * 27 13 12 46 46 H 1.09009 * 109.48549 * 296.78156 * 28 10 9 47 47 H 1.08998 * 109.48761 * 56.81768 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5210 -4.8940 0.2388 12 6 2.5565 -6.0187 0.3103 13 7 3.3195 -6.0592 -0.9451 14 6 4.2741 -7.1757 -0.9451 15 6 4.8581 -7.3373 -2.3249 16 6 6.0181 -6.8139 -2.7711 17 7 6.1855 -7.1843 -4.0457 18 6 5.1668 -7.9265 -4.4188 19 6 4.9790 -8.5302 -5.7560 20 6 3.8496 -9.3051 -6.0225 21 6 3.6775 -9.8608 -7.2736 22 6 4.6273 -9.6604 -8.2593 23 6 5.7521 -8.8978 -7.9998 24 6 5.9334 -8.3324 -6.7544 25 7 4.3096 -8.0400 -3.3636 26 1 3.4712 -8.5277 -3.3513 27 6 4.0042 -4.7810 -1.1832 28 6 2.9687 -3.6562 -1.2548 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 0.8254 -5.0915 -0.5768 33 1 0.9735 -4.8434 1.1799 34 1 2.0486 -6.9717 0.4582 35 1 3.2357 -5.8352 1.1429 36 1 3.7602 -8.0932 -0.6583 37 1 5.0740 -6.9699 -0.2338 38 1 6.6965 -6.2001 -2.1972 39 1 3.1098 -9.4663 -5.2523 40 1 2.8014 -10.4568 -7.4826 41 1 4.4903 -10.1015 -9.2356 42 1 6.4897 -8.7448 -8.7736 43 1 6.8117 -7.7369 -6.5532 44 1 4.6998 -4.5834 -0.3677 45 1 4.5517 -4.8315 -2.1245 46 1 2.2895 -3.8396 -2.0874 47 1 3.4762 -2.7030 -1.4028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602747547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:14 Heat of formation + Delta-G solvation = 73.219073 kcal Electronic energy + Delta-G solvation = -26597.045462 eV Core-core repulsion = 22972.397510 eV Total energy + Delta-G solvation = -3624.647952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.06076 -40.16242 -39.73944 -36.82401 -34.67884 -33.67427 -33.14152 -31.88228 -31.79560 -30.98697 -29.26873 -27.29084 -25.32997 -24.61793 -23.91042 -23.49950 -23.06468 -21.90617 -21.24678 -20.62601 -18.98949 -18.51090 -17.42945 -17.24048 -16.57505 -16.40261 -16.06632 -15.86031 -15.83755 -15.74285 -15.45703 -15.22840 -14.89411 -14.71953 -14.38846 -14.26030 -14.12663 -13.71315 -13.66126 -13.47313 -13.17526 -12.93745 -12.72155 -12.45909 -12.29062 -12.26612 -12.13570 -12.01653 -11.93525 -11.55976 -11.21007 -11.06421 -11.03008 -10.64657 -10.43988 -9.90538 -9.40950 -9.06615 -8.82372 -8.23081 -6.33270 -0.07228 0.46017 1.16734 1.39548 1.39671 1.53692 2.00899 2.09375 2.38443 2.96572 3.00147 3.09189 3.28051 3.29196 3.79370 3.93229 3.97532 4.04627 4.11855 4.19991 4.22738 4.29741 4.35446 4.44402 4.46503 4.48708 4.54998 4.63092 4.67525 4.72747 4.86069 4.91110 4.95405 5.01107 5.03695 5.11790 5.19238 5.20302 5.26555 5.45489 5.52075 5.57506 5.61907 5.72358 5.95556 6.00412 6.01722 6.04664 6.30600 6.40383 6.60794 6.82717 6.99517 7.36576 8.88395 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.002346 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.076672 B =11929.916737 C =12539.610958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.542 5.542 11 C 0.052 3.948 12 C 0.072 3.928 13 N -0.546 5.546 14 C 0.131 3.869 15 C 0.010 3.990 16 C -0.037 4.037 17 N -0.505 5.505 18 C 0.232 3.768 19 C -0.034 4.034 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.099 4.099 25 N -0.542 5.542 26 H 0.431 0.569 27 C 0.074 3.926 28 C 0.072 3.928 29 H 0.265 0.735 30 H -0.044 1.044 31 H 0.007 0.993 32 H 0.018 0.982 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.178 0.822 39 H 0.134 0.866 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.123 0.877 44 H 0.045 0.955 45 H 0.078 0.922 46 H 0.007 0.993 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.544 -24.688 -11.119 28.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.267 5.267 11 C -0.076 4.076 12 C -0.055 4.055 13 N -0.272 5.272 14 C 0.003 3.997 15 C -0.108 4.108 16 C -0.187 4.187 17 N -0.225 5.225 18 C -0.028 4.028 19 C -0.036 4.036 20 C -0.137 4.137 21 C -0.137 4.137 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.119 4.119 25 N -0.146 5.146 26 H 0.271 0.729 27 C -0.054 4.054 28 C -0.057 4.057 29 H 0.073 0.927 30 H -0.026 1.026 31 H 0.025 0.975 32 H 0.036 0.964 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.065 0.935 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.196 0.804 39 H 0.151 0.849 40 H 0.170 0.830 41 H 0.170 0.830 42 H 0.165 0.835 43 H 0.141 0.859 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.025 0.975 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.088 -24.336 -11.542 28.762 hybrid contribution -1.107 1.053 0.609 1.645 sum 8.982 -23.283 -10.933 27.245 Atomic orbital electron populations 1.70091 1.07736 1.27874 1.51820 1.25935 0.95777 1.03271 0.94781 0.85325 0.78971 0.78503 0.77778 1.18717 1.20471 1.20167 1.21474 0.93565 0.91065 1.49967 0.91972 1.19352 0.90087 0.89086 0.93260 1.62234 1.27224 1.03220 1.34000 1.22201 0.95847 0.89560 1.00032 1.22108 0.95258 0.98388 0.89752 1.62133 1.26393 1.03212 1.35446 1.20522 0.95054 0.95204 0.88958 1.21299 0.96313 1.01038 0.92184 1.22389 0.98627 1.05544 0.92174 1.70306 1.24238 1.14259 1.13661 1.21495 0.89065 1.02007 0.90225 1.17804 0.97363 0.99712 0.88701 1.21306 0.96226 0.97388 0.98791 1.21388 1.00293 0.99681 0.92299 1.21672 0.93479 0.97515 1.00491 1.21420 0.98930 0.97300 0.96321 1.21282 0.98496 0.99137 0.92989 1.43163 1.20696 1.40804 1.09951 0.72890 1.22020 0.94579 0.87756 1.01025 1.21923 0.95622 0.98438 0.89691 0.92650 1.02600 0.97522 0.96404 0.90721 0.87535 0.93454 0.87347 0.90611 0.80450 0.84859 0.83012 0.83033 0.83492 0.85858 0.93657 0.90348 0.97515 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.52 -30.30 8.47 25.60 0.22 -30.08 16 8 H 0.06 3.55 7.13 -2.91 -0.02 3.53 16 9 C 0.21 11.46 4.72 85.56 0.40 11.86 16 10 N -0.54 -24.00 4.70 -900.27 -4.23 -28.23 16 11 C 0.05 1.85 5.61 86.31 0.48 2.34 16 12 C 0.07 1.85 5.61 86.31 0.48 2.33 16 13 N -0.55 -14.00 4.70 -900.28 -4.23 -18.23 16 14 C 0.13 2.42 5.52 85.56 0.47 2.89 16 15 C 0.01 0.21 5.98 40.99 0.25 0.46 16 16 C -0.04 -0.94 10.67 83.62 0.89 -0.05 16 17 N -0.51 -14.38 10.88 -189.38 -2.06 -16.44 16 18 C 0.23 5.70 7.77 136.56 1.06 6.76 16 19 C -0.03 -0.72 5.87 -20.09 -0.12 -0.83 16 20 C -0.12 -1.85 9.70 22.52 0.22 -1.63 16 21 C -0.12 -1.46 10.03 22.23 0.22 -1.24 16 22 C -0.11 -1.33 10.04 22.32 0.22 -1.11 16 23 C -0.12 -1.77 10.03 22.23 0.22 -1.55 16 24 C -0.10 -2.00 9.69 22.52 0.22 -1.78 16 25 N -0.54 -11.02 6.08 -175.58 -1.07 -12.09 16 26 H 0.43 6.31 8.09 -92.71 -0.75 5.56 16 27 C 0.07 2.30 5.41 86.31 0.47 2.77 16 28 C 0.07 2.95 5.43 86.31 0.47 3.42 16 29 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 30 H -0.04 -2.64 8.12 -2.39 -0.02 -2.66 16 31 H 0.01 0.39 8.03 -2.39 -0.02 0.37 16 32 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 34 H 0.11 2.01 8.07 -2.39 -0.02 1.99 16 35 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.11 1.47 8.03 -2.39 -0.02 1.45 16 37 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 38 H 0.18 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.13 1.54 7.18 -2.91 -0.02 1.52 16 40 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.12 2.69 7.84 -2.91 -0.02 2.67 16 44 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.08 2.39 6.39 -2.38 -0.02 2.37 16 46 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 47 H 0.06 2.87 6.79 -2.39 -0.02 2.86 16 Total: -1.00 -73.53 381.47 -2.42 -75.95 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.22 Total: 13.82 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 6.65 Total: -4.96 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -11.31 Total: -131.91 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -73.53 -2.42 -75.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602747547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.169 kcal (2) G-P(sol) polarization free energy of solvation -73.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds