Wall clock time and date at job start Tue Mar 31 2020 14:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 113.25505 * 2 1 4 4 C 1.53505 * 114.16927 * 132.95317 * 2 1 3 5 5 N 1.47483 * 87.93329 * 139.66725 * 4 2 1 6 6 C 1.46897 * 111.00286 * 221.29430 * 5 4 2 7 7 C 1.50703 * 109.46814 * 170.00241 * 6 5 4 8 8 C 1.35074 * 126.07152 * 260.02242 * 7 6 5 9 9 N 1.35052 * 107.98569 * 179.74363 * 8 7 6 10 10 C 1.46493 * 125.92784 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47255 * 124.99720 * 10 9 8 12 12 H 1.08005 * 120.00383 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99941 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00097 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99862 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46989 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.46725 * 119.99516 * 15 13 11 18 18 H 1.48494 * 109.46778 * 239.99605 * 15 13 11 19 19 N 1.40073 * 108.14133 * 359.97438 * 9 8 7 20 20 C 1.31651 * 108.10339 * 359.97438 * 19 9 8 21 21 C 1.48369 * 126.04038 * 180.02562 * 20 19 9 22 22 C 1.39768 * 120.90022 * 144.70141 * 21 20 19 23 23 C 1.37968 * 119.01415 * 179.77631 * 22 21 20 24 24 N 1.31932 * 120.88135 * 0.50503 * 23 22 21 25 25 C 1.31929 * 122.00672 * 359.74194 * 24 23 22 26 26 C 1.37967 * 120.88039 * 359.97438 * 25 24 23 27 27 C 1.47478 * 87.83636 * 332.99046 * 5 4 2 28 28 H 1.08998 * 109.46547 * 287.05089 * 1 2 3 29 29 H 1.09001 * 109.46909 * 47.04362 * 1 2 3 30 30 H 1.09000 * 109.47264 * 167.04767 * 1 2 3 31 31 H 1.09001 * 109.46930 * 192.95246 * 3 2 1 32 32 H 1.08996 * 109.47640 * 312.95119 * 3 2 1 33 33 H 1.08996 * 109.47215 * 72.95766 * 3 2 1 34 34 H 1.08996 * 113.47885 * 24.90601 * 4 2 1 35 35 H 1.09001 * 113.53161 * 254.44196 * 4 2 1 36 36 H 1.09000 * 109.47015 * 50.00009 * 6 5 4 37 37 H 1.08997 * 109.47024 * 289.99963 * 6 5 4 38 38 H 1.08003 * 126.00401 * 359.76085 * 8 7 6 39 39 H 1.09001 * 109.46826 * 244.99588 * 10 9 8 40 40 H 1.09004 * 109.47581 * 4.99243 * 10 9 8 41 41 H 0.97004 * 119.99944 * 180.02562 * 14 13 11 42 42 H 1.07996 * 120.49382 * 0.02562 * 22 21 20 43 43 H 1.08009 * 119.55680 * 180.26834 * 23 22 21 44 44 H 1.07994 * 119.56112 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.48955 * 180.02562 * 26 25 24 46 46 H 1.08999 * 113.47976 * 141.77307 * 27 5 4 47 47 H 1.08994 * 113.47515 * 272.24166 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1341 1.4057 0.0000 4 6 2.1586 -0.9543 1.0250 5 7 3.1618 -1.3060 0.0028 6 6 3.4330 -2.7497 0.0060 7 6 4.2660 -3.1069 -1.1979 8 6 3.8097 -3.6464 -2.3491 9 7 4.8626 -3.8107 -3.1788 10 6 4.8110 -4.3661 -4.5334 11 6 5.4256 -3.3879 -5.5011 12 1 5.8153 -2.4464 -5.1429 13 6 5.4895 -3.6944 -6.8439 14 7 5.0146 -4.8405 -7.2801 15 14 6.2507 -2.4815 -8.0435 16 1 6.7063 -1.2757 -7.3061 17 1 7.4103 -3.1161 -8.7200 18 1 5.2401 -2.0883 -9.0580 19 7 6.0122 -3.3569 -2.5197 20 6 5.6578 -2.9308 -1.3255 21 6 6.5642 -2.3657 -0.2958 22 6 6.1383 -1.3368 0.5488 23 6 7.0119 -0.8434 1.4958 24 7 8.2362 -1.3232 1.6028 25 6 8.6790 -2.2903 0.8223 26 6 7.8690 -2.8445 -0.1474 27 6 2.1586 -0.9589 -1.0209 28 1 -0.3632 0.3013 0.9825 29 1 -0.3633 0.7003 -0.7521 30 1 -0.3634 -1.0015 -0.2303 31 1 3.1977 1.3441 -0.2303 32 1 1.6343 2.0160 -0.7521 33 1 2.0009 1.8584 0.9825 34 1 1.5091 -1.7854 1.2999 35 1 2.5813 -0.4454 1.8913 36 1 2.4907 -3.2964 -0.0288 37 1 3.9740 -3.0157 0.9141 38 1 2.7832 -3.9012 -2.5677 39 1 5.3660 -5.3037 -4.5630 40 1 3.7732 -4.5492 -4.8118 41 1 5.0599 -5.0563 -8.2248 42 1 5.1388 -0.9366 0.4640 43 1 6.6904 -0.0513 2.1559 44 1 9.6886 -2.6535 0.9445 45 1 8.2378 -3.6362 -0.7826 46 1 2.5810 -0.4529 -1.8890 47 1 1.5091 -1.7911 -1.2920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602752326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:11 Heat of formation + Delta-G solvation = 125.625483 kcal Electronic energy + Delta-G solvation = -27608.968669 eV Core-core repulsion = 23986.593230 eV Total energy + Delta-G solvation = -3622.375439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.33410 -41.15360 -40.66982 -36.03879 -34.77275 -34.19492 -32.45057 -32.10082 -31.31105 -29.34052 -28.20696 -27.33388 -26.69998 -25.80088 -24.26754 -24.02918 -23.00364 -21.52468 -20.70633 -19.21090 -18.70849 -18.07037 -17.18202 -16.98736 -16.80200 -16.52254 -16.34902 -15.98835 -15.75364 -15.64874 -14.92841 -14.69629 -14.67090 -14.31781 -14.19444 -14.16562 -13.99581 -13.74862 -13.48930 -13.32401 -13.03232 -12.83753 -12.75315 -12.66067 -12.54439 -12.36953 -12.08176 -11.89729 -11.79941 -11.57847 -11.36628 -10.99925 -10.95694 -10.77421 -10.45226 -10.03825 -9.91295 -9.69640 -9.19865 -8.39928 -6.53546 0.02873 0.29073 1.13292 1.31701 1.34206 1.46581 1.77884 1.87783 2.29747 2.92194 2.98071 3.24849 3.42606 3.49311 3.64896 3.76805 3.91035 4.07791 4.09141 4.20235 4.23641 4.31269 4.35866 4.40340 4.51071 4.61403 4.70323 4.78874 4.80806 4.85330 4.87895 4.89975 4.93481 4.97089 5.01389 5.08530 5.13152 5.15153 5.24127 5.25749 5.38419 5.46602 5.49852 5.55074 5.60130 5.69888 5.79667 5.84961 6.17057 6.25308 6.57622 6.90665 7.05469 7.16908 8.68324 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008627 B = 0.004238 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.679985 B = 6605.787107 C = 8654.288008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.120 4.120 4 C 0.009 3.991 5 N -0.477 5.477 6 C 0.112 3.888 7 C -0.227 4.227 8 C 0.050 3.950 9 N -0.344 5.344 10 C 0.272 3.728 11 C -0.547 4.547 12 H 0.047 0.953 13 C 0.023 3.977 14 N -0.918 5.918 15 Si 0.968 3.032 16 H -0.278 1.278 17 H -0.272 1.272 18 H -0.266 1.266 19 N -0.314 5.314 20 C 0.084 3.916 21 C 0.024 3.976 22 C -0.152 4.152 23 C 0.094 3.906 24 N -0.503 5.503 25 C 0.093 3.907 26 C -0.166 4.166 27 C 0.007 3.993 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.192 0.808 39 H 0.020 0.980 40 H 0.057 0.943 41 H 0.273 0.727 42 H 0.177 0.823 43 H 0.187 0.813 44 H 0.180 0.820 45 H 0.125 0.875 46 H 0.053 0.947 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.433 8.256 19.111 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.177 4.177 4 C -0.119 4.119 5 N -0.199 5.199 6 C -0.016 4.016 7 C -0.239 4.239 8 C -0.098 4.098 9 N -0.124 5.124 10 C 0.153 3.847 11 C -0.585 4.585 12 H 0.066 0.934 13 C -0.178 4.178 14 N -0.557 5.557 15 Si 0.792 3.208 16 H -0.203 1.203 17 H -0.197 1.197 18 H -0.191 1.191 19 N -0.138 5.138 20 C -0.079 4.079 21 C 0.014 3.986 22 C -0.172 4.172 23 C -0.063 4.063 24 N -0.212 5.212 25 C -0.063 4.063 26 C -0.187 4.187 27 C -0.122 4.122 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.209 0.791 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.194 0.806 43 H 0.204 0.796 44 H 0.197 0.803 45 H 0.143 0.857 46 H 0.072 0.928 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.278 8.487 18.566 21.358 hybrid contribution -1.299 -0.870 -1.668 2.286 sum -7.577 7.618 16.898 20.025 Atomic orbital electron populations 1.21698 0.92600 1.02058 1.02651 1.21972 0.95869 0.95097 0.95718 1.21459 1.00284 0.93623 1.02322 1.24011 0.93137 0.98494 0.96246 1.68722 1.30255 1.15545 1.05380 1.20775 0.97370 0.89597 0.93904 1.19911 0.92388 1.13129 0.98479 1.22785 0.94982 1.01433 0.90598 1.49092 1.04159 1.45373 1.13769 1.19309 0.98524 0.93503 0.73350 1.21360 1.41011 1.03554 0.92573 0.93443 1.25679 0.95249 0.97345 0.99530 1.69986 1.46004 1.23233 1.16465 0.85356 0.78586 0.78508 0.78332 1.20300 1.19746 1.19127 1.77573 1.09930 1.19304 1.06988 1.20818 0.93774 1.00861 0.92468 1.18383 0.92224 0.95260 0.92758 1.23035 1.04087 0.95338 0.94786 1.23149 0.88328 0.98459 0.96320 1.67674 1.16826 1.11175 1.25571 1.22932 1.00490 0.92193 0.90680 1.22322 0.94058 1.02085 1.00237 1.23920 0.93450 0.98645 0.96195 0.90974 0.92445 0.92443 0.93188 0.92637 0.90907 0.90114 0.88642 0.91878 0.89894 0.79141 0.96193 0.92503 0.91737 0.80639 0.79641 0.80346 0.85685 0.92812 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.29 71.98 0.67 -0.99 16 2 C -0.09 -1.36 1.52 -51.84 -0.08 -1.43 16 3 C -0.12 -1.91 9.23 71.98 0.66 -1.24 16 4 C 0.01 0.14 6.87 83.57 0.57 0.71 16 5 N -0.48 -10.23 3.81 -932.36 -3.55 -13.78 16 6 C 0.11 2.66 4.25 85.56 0.36 3.02 16 7 C -0.23 -7.55 5.23 -19.95 -0.10 -7.66 16 8 C 0.05 1.83 11.33 83.47 0.95 2.78 16 9 N -0.34 -15.86 3.67 -351.92 -1.29 -17.15 16 10 C 0.27 14.08 6.26 85.63 0.54 14.62 16 11 C -0.55 -31.15 9.23 25.60 0.24 -30.91 16 12 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 13 C 0.02 1.26 5.46 84.66 0.46 1.72 16 14 N -0.92 -51.96 13.29 21.45 0.28 -51.68 16 15 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 19 N -0.31 -14.84 12.42 -48.17 -0.60 -15.44 16 20 C 0.08 3.29 6.78 42.51 0.29 3.58 16 21 C 0.02 0.80 5.83 -19.84 -0.12 0.69 16 22 C -0.15 -4.19 8.90 22.58 0.20 -3.99 16 23 C 0.09 2.28 11.17 84.61 0.95 3.23 16 24 N -0.50 -13.67 10.35 -196.13 -2.03 -15.70 16 25 C 0.09 2.50 11.17 84.61 0.95 3.45 16 26 C -0.17 -5.26 9.87 22.58 0.22 -5.04 16 27 C 0.01 0.15 6.42 83.58 0.54 0.68 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 30 H 0.06 0.71 7.90 -2.39 -0.02 0.69 16 31 H 0.05 0.98 7.93 -2.39 -0.02 0.96 16 32 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.02 7.73 -2.39 -0.02 1.00 16 35 H 0.10 1.23 8.12 -2.39 -0.02 1.21 16 36 H 0.06 1.26 7.56 -2.39 -0.02 1.24 16 37 H 0.08 1.91 7.81 -2.39 -0.02 1.89 16 38 H 0.19 5.55 8.06 -2.91 -0.02 5.53 16 39 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 2.86 8.07 -2.38 -0.02 2.84 16 41 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.18 4.56 4.86 -2.91 -0.01 4.54 16 43 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 44 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 45 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 46 H 0.05 1.47 8.12 -2.39 -0.02 1.45 16 47 H 0.07 1.49 7.49 -2.39 -0.02 1.47 16 Total: -1.00 -67.32 387.84 3.09 -64.24 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.95 Total: 20.14 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 7.29 Total: -16.79 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -7.18 Total: -113.75 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.32 3.09 -64.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602752326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.861 kcal (2) G-P(sol) polarization free energy of solvation -67.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds