Wall clock time and date at job start Tue Mar 31 2020 14:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99608 * 2 1 4 4 H 1.48501 * 109.47183 * 240.00076 * 3 2 1 5 5 H 1.48492 * 109.47317 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46772 * 120.00707 * 3 2 1 7 7 C 1.37876 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99799 * 166.10160 * 7 2 1 9 9 C 1.50699 * 119.99917 * 346.09410 * 7 2 1 10 10 C 1.52997 * 115.55018 * 325.04222 * 9 7 2 11 11 N 1.46903 * 109.46959 * 148.95303 * 10 9 7 12 12 C 1.46846 * 110.99946 * 283.65646 * 11 10 9 13 13 C 1.53042 * 109.52466 * 174.15985 * 12 11 10 14 14 C 1.53119 * 109.27813 * 59.17765 * 13 12 11 15 15 C 1.53124 * 109.16204 * 302.34836 * 14 13 12 16 16 H 1.08995 * 109.50309 * 297.67439 * 15 14 13 17 17 C 1.50698 * 109.50342 * 177.58968 * 15 14 13 18 18 N 1.30798 * 126.25291 * 300.05903 * 17 15 14 19 19 N 1.28678 * 110.29465 * 180.02562 * 18 17 15 20 20 C 1.32301 * 109.48542 * 359.97438 * 19 18 17 21 21 C 1.40818 * 133.47278 * 180.02562 * 20 19 18 22 22 C 1.36013 * 119.23046 * 179.97438 * 21 20 19 23 23 C 1.40547 * 119.74740 * 0.25876 * 22 21 20 24 24 C 1.34961 * 120.36516 * 359.49278 * 23 22 21 25 25 N 1.36071 * 126.24205 * 120.07684 * 17 15 14 26 26 C 1.46845 * 110.99612 * 159.40755 * 11 10 9 27 27 C 1.53000 * 117.51939 * 110.75102 * 9 7 2 28 28 C 1.52999 * 60.00168 * 107.47492 * 27 9 7 29 29 H 0.96993 * 120.00359 * 5.00673 * 1 2 3 30 30 H 1.09000 * 109.47403 * 28.95943 * 10 9 7 31 31 H 1.08998 * 109.47683 * 268.95023 * 10 9 7 32 32 H 1.09001 * 109.46055 * 54.14708 * 12 11 10 33 33 H 1.09004 * 109.46497 * 294.17796 * 12 11 10 34 34 H 1.09001 * 109.49807 * 299.24121 * 13 12 11 35 35 H 1.08995 * 109.53926 * 179.14095 * 13 12 11 36 36 H 1.08994 * 109.52738 * 182.44122 * 14 13 12 37 37 H 1.09007 * 109.57052 * 62.28339 * 14 13 12 38 38 H 1.08002 * 120.37868 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.12901 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.81587 * 179.74149 * 23 22 21 41 41 H 1.08002 * 119.74245 * 180.25620 * 24 23 22 42 42 H 1.08999 * 109.43161 * 65.80711 * 26 11 10 43 43 H 1.08998 * 109.49742 * 305.83510 * 26 11 10 44 44 H 1.08995 * 117.49681 * 214.97091 * 27 9 7 45 45 H 1.09008 * 117.49396 * 359.97438 * 27 9 7 46 46 H 1.08994 * 117.49925 * 252.50672 * 28 27 9 47 47 H 1.09008 * 117.51207 * 107.47946 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0609 -1.2076 -0.2252 9 6 1.2842 -2.4801 0.3125 10 6 0.1680 -2.3747 1.3536 11 7 -0.8752 -3.3650 1.0550 12 6 -1.7080 -2.9283 -0.0729 13 6 -2.6862 -4.0437 -0.4484 14 6 -3.5649 -4.3740 0.7613 15 6 -2.6707 -4.7792 1.9364 16 1 -2.1134 -5.6791 1.6761 17 6 -3.5244 -5.0489 3.1486 18 7 -4.3227 -4.1965 3.7376 19 7 -4.9023 -4.7501 4.7443 20 6 -4.4977 -6.0051 4.8512 21 6 -4.8006 -7.0477 5.7480 22 6 -4.2016 -8.2580 5.5862 23 6 -3.2888 -8.4494 4.5348 24 6 -3.0119 -7.4424 3.6799 25 7 -3.6051 -6.2237 3.8305 26 6 -1.6923 -3.6430 2.2430 27 6 1.0924 -3.4793 -0.8302 28 6 2.1016 -3.7732 0.2816 29 1 -0.4850 0.8367 -0.0733 30 1 -0.2625 -1.3737 1.3247 31 1 0.5770 -2.5659 2.3456 32 1 -1.0712 -2.7007 -0.9278 33 1 -2.2661 -2.0363 0.2117 34 1 -2.1286 -4.9316 -0.7464 35 1 -3.3148 -3.7141 -1.2756 36 1 -4.2338 -5.1975 0.5117 37 1 -4.1525 -3.4978 1.0359 38 1 -5.5004 -6.8879 6.5550 39 1 -4.4229 -9.0676 6.2659 40 1 -2.8093 -9.4088 4.4078 41 1 -2.3120 -7.6018 2.8730 42 1 -2.2500 -2.7476 2.5172 43 1 -1.0447 -3.9348 3.0698 44 1 0.1710 -4.0614 -0.8404 45 1 1.4870 -3.2062 -1.8090 46 1 3.1601 -3.6937 0.0344 47 1 1.8442 -4.5487 1.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602777585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:22 Heat of formation + Delta-G solvation = 144.075447 kcal Electronic energy + Delta-G solvation = -28100.738523 eV Core-core repulsion = 24479.163134 eV Total energy + Delta-G solvation = -3621.575389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.64624 -38.87955 -38.28613 -36.28805 -34.27210 -32.54454 -32.16780 -31.55276 -30.89633 -28.49822 -26.26168 -25.21808 -24.44054 -23.89021 -23.35144 -22.40015 -21.26280 -20.76990 -19.26796 -18.70056 -18.14326 -17.27537 -16.59955 -16.22931 -16.02912 -15.24927 -15.16863 -14.67371 -14.51250 -14.32021 -13.94660 -13.38545 -13.20996 -12.91415 -12.73438 -12.71076 -12.48383 -12.19498 -11.89630 -11.66701 -11.52682 -11.44865 -11.15791 -11.10430 -10.94025 -10.70316 -10.54902 -10.39718 -10.26888 -10.23345 -10.00133 -9.89337 -9.68220 -9.08852 -9.06858 -8.60081 -8.20905 -7.94091 -7.32759 -5.99740 -4.06039 0.37019 0.91451 2.13355 2.62317 3.11917 3.28092 3.34595 3.37627 3.85362 4.17398 4.22082 4.36517 4.49127 4.59242 4.61665 4.81389 4.98536 5.05842 5.14266 5.24598 5.29293 5.47046 5.57430 5.65891 5.68006 5.73400 5.79469 5.87391 5.90711 6.07233 6.13069 6.18350 6.22047 6.28406 6.38980 6.43133 6.55738 6.70340 6.70844 6.81782 6.88872 6.89788 7.13761 7.21263 7.43526 7.56961 7.57854 7.91512 8.03789 8.18860 8.49749 8.57738 8.89687 9.50690 10.94796 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.003027 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.307782 B = 9248.360076 C = 9517.220017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.069 3.931 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.488 4.488 8 H 0.059 0.941 9 C 0.058 3.942 10 C 0.073 3.927 11 N -0.533 5.533 12 C 0.062 3.938 13 C -0.117 4.117 14 C -0.105 4.105 15 C 0.009 3.991 16 H 0.090 0.910 17 C 0.166 3.834 18 N -0.243 5.243 19 N -0.291 5.291 20 C 0.182 3.818 21 C -0.079 4.079 22 C -0.092 4.092 23 C -0.144 4.144 24 C 0.072 3.928 25 N -0.391 5.391 26 C 0.070 3.930 27 C -0.197 4.197 28 C -0.207 4.207 29 H 0.262 0.738 30 H 0.108 0.892 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.155 0.845 41 H 0.170 0.830 42 H 0.041 0.959 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.937 -17.771 6.999 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.525 4.525 8 H 0.077 0.923 9 C 0.057 3.943 10 C -0.053 4.053 11 N -0.258 5.258 12 C -0.065 4.065 13 C -0.155 4.155 14 C -0.144 4.144 15 C -0.012 4.012 16 H 0.108 0.892 17 C -0.097 4.097 18 N -0.082 5.082 19 N -0.136 5.136 20 C -0.067 4.067 21 C -0.100 4.100 22 C -0.116 4.116 23 C -0.166 4.166 24 C -0.050 4.050 25 N -0.071 5.071 26 C -0.059 4.059 27 C -0.235 4.235 28 C -0.245 4.245 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.172 0.828 41 H 0.187 0.813 42 H 0.059 0.941 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.624 -16.547 7.165 20.439 hybrid contribution 0.816 0.209 0.036 0.843 sum -8.809 -16.338 7.201 19.909 Atomic orbital electron populations 1.69729 1.05831 1.26748 1.48986 1.24956 0.94840 0.98973 0.94510 0.86668 0.79754 0.82971 0.78705 1.20331 1.21242 1.20186 1.20618 0.95120 0.89891 1.46907 0.92297 1.18899 0.93786 0.87705 0.93882 1.22010 0.90969 0.96821 0.95492 1.61959 1.12725 1.46886 1.04184 1.22089 0.94462 0.94247 0.95749 1.21667 0.97406 1.00153 0.96280 1.21589 0.97193 1.01490 0.94082 1.19704 0.93418 1.00903 0.87179 0.89219 1.25123 1.03617 0.80893 1.00110 1.74243 1.06529 1.24338 1.03049 1.74981 1.22377 1.02236 1.14030 1.22362 0.95027 0.96420 0.92900 1.20263 1.01587 0.89840 0.98301 1.21158 0.95589 0.97133 0.97762 1.20922 1.00617 0.99332 0.95696 1.21738 0.98730 0.82712 1.01843 1.43785 1.30454 1.10492 1.22340 1.21896 0.94136 0.95739 0.94164 1.23039 0.99340 1.07521 0.93576 1.22772 0.95468 1.02770 1.03447 0.92754 0.87515 0.94625 0.88508 0.94689 0.91672 0.91660 0.92646 0.90943 0.82783 0.83663 0.82773 0.81259 0.94062 0.91888 0.89566 0.91879 0.91746 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.17 10.69 55.43 0.59 -22.58 16 2 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 3 Si 0.89 20.62 29.56 -169.99 -5.03 15.60 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.49 -13.05 9.03 -34.44 -0.31 -13.37 16 8 H 0.06 1.59 7.85 -52.49 -0.41 1.18 16 9 C 0.06 1.41 2.17 -155.66 -0.34 1.07 16 10 C 0.07 1.69 4.87 -3.82 -0.02 1.67 16 11 N -0.53 -10.28 3.59 -234.67 -0.84 -11.13 16 12 C 0.06 1.18 4.28 -3.83 -0.02 1.17 16 13 C -0.12 -1.74 6.09 -26.65 -0.16 -1.91 16 14 C -0.10 -1.49 5.27 -26.61 -0.14 -1.63 16 15 C 0.01 0.14 2.78 -91.69 -0.25 -0.12 16 16 H 0.09 1.15 7.53 -51.93 -0.39 0.76 16 17 C 0.17 2.50 6.65 -154.22 -1.03 1.48 16 18 N -0.24 -4.31 12.19 32.94 0.40 -3.91 16 19 N -0.29 -4.93 12.31 31.14 0.38 -4.55 16 20 C 0.18 2.47 7.92 -156.06 -1.24 1.23 16 21 C -0.08 -0.72 10.11 -39.41 -0.40 -1.11 16 22 C -0.09 -0.58 10.07 -39.51 -0.40 -0.98 16 23 C -0.14 -0.90 9.98 -39.88 -0.40 -1.30 16 24 C 0.07 0.63 10.78 -16.70 -0.18 0.45 16 25 N -0.39 -5.00 2.95 -59.73 -0.18 -5.18 16 26 C 0.07 1.23 4.69 -3.83 -0.02 1.21 16 27 C -0.20 -4.38 8.14 -26.73 -0.22 -4.60 16 28 C -0.21 -4.54 9.93 -26.73 -0.27 -4.81 16 29 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 30 H 0.11 2.75 4.83 -51.93 -0.25 2.50 16 31 H 0.04 0.81 7.78 -51.93 -0.40 0.41 16 32 H 0.10 2.09 5.76 -51.93 -0.30 1.79 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.15 0.44 8.06 -52.49 -0.42 0.01 16 40 H 0.15 0.46 8.06 -52.49 -0.42 0.03 16 41 H 0.17 1.09 7.63 -52.49 -0.40 0.69 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 44 H 0.09 1.80 5.56 -51.93 -0.29 1.51 16 45 H 0.06 1.45 8.14 -51.92 -0.42 1.03 16 46 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -30.35 371.17 -11.61 -41.96 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.07 Total: 4.00 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -5.47 Total: -19.81 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.36 Total: -47.34 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.35 -11.61 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602777585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.033 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds