Wall clock time and date at job start Tue Mar 31 2020 14:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99608 * 2 1 4 4 H 1.48501 * 109.47183 * 240.00076 * 3 2 1 5 5 H 1.48492 * 109.47317 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46772 * 120.00707 * 3 2 1 7 7 C 1.37876 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99799 * 166.10160 * 7 2 1 9 9 C 1.50699 * 119.99917 * 346.09410 * 7 2 1 10 10 C 1.52997 * 115.55018 * 325.04222 * 9 7 2 11 11 N 1.46903 * 109.46959 * 148.95303 * 10 9 7 12 12 C 1.46846 * 110.99946 * 283.65646 * 11 10 9 13 13 C 1.53042 * 109.52466 * 174.15985 * 12 11 10 14 14 C 1.53119 * 109.27813 * 59.17765 * 13 12 11 15 15 C 1.53124 * 109.16204 * 302.34836 * 14 13 12 16 16 H 1.08995 * 109.50309 * 297.67439 * 15 14 13 17 17 C 1.50698 * 109.50342 * 177.58968 * 15 14 13 18 18 N 1.30798 * 126.25291 * 300.05903 * 17 15 14 19 19 N 1.28678 * 110.29465 * 180.02562 * 18 17 15 20 20 C 1.32301 * 109.48542 * 359.97438 * 19 18 17 21 21 C 1.40818 * 133.47278 * 180.02562 * 20 19 18 22 22 C 1.36013 * 119.23046 * 179.97438 * 21 20 19 23 23 C 1.40547 * 119.74740 * 0.25876 * 22 21 20 24 24 C 1.34961 * 120.36516 * 359.49278 * 23 22 21 25 25 N 1.36071 * 126.24205 * 120.07684 * 17 15 14 26 26 C 1.46845 * 110.99612 * 159.40755 * 11 10 9 27 27 C 1.53000 * 117.51939 * 110.75102 * 9 7 2 28 28 C 1.52999 * 60.00168 * 107.47492 * 27 9 7 29 29 H 0.96993 * 120.00359 * 5.00673 * 1 2 3 30 30 H 1.09000 * 109.47403 * 28.95943 * 10 9 7 31 31 H 1.08998 * 109.47683 * 268.95023 * 10 9 7 32 32 H 1.09001 * 109.46055 * 54.14708 * 12 11 10 33 33 H 1.09004 * 109.46497 * 294.17796 * 12 11 10 34 34 H 1.09001 * 109.49807 * 299.24121 * 13 12 11 35 35 H 1.08995 * 109.53926 * 179.14095 * 13 12 11 36 36 H 1.08994 * 109.52738 * 182.44122 * 14 13 12 37 37 H 1.09007 * 109.57052 * 62.28339 * 14 13 12 38 38 H 1.08002 * 120.37868 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.12901 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.81587 * 179.74149 * 23 22 21 41 41 H 1.08002 * 119.74245 * 180.25620 * 24 23 22 42 42 H 1.08999 * 109.43161 * 65.80711 * 26 11 10 43 43 H 1.08998 * 109.49742 * 305.83510 * 26 11 10 44 44 H 1.08995 * 117.49681 * 214.97091 * 27 9 7 45 45 H 1.09008 * 117.49396 * 359.97438 * 27 9 7 46 46 H 1.08994 * 117.49925 * 252.50672 * 28 27 9 47 47 H 1.09008 * 117.51207 * 107.47946 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0609 -1.2076 -0.2252 9 6 1.2842 -2.4801 0.3125 10 6 0.1680 -2.3747 1.3536 11 7 -0.8752 -3.3650 1.0550 12 6 -1.7080 -2.9283 -0.0729 13 6 -2.6862 -4.0437 -0.4484 14 6 -3.5649 -4.3740 0.7613 15 6 -2.6707 -4.7792 1.9364 16 1 -2.1134 -5.6791 1.6761 17 6 -3.5244 -5.0489 3.1486 18 7 -4.3227 -4.1965 3.7376 19 7 -4.9023 -4.7501 4.7443 20 6 -4.4977 -6.0051 4.8512 21 6 -4.8006 -7.0477 5.7480 22 6 -4.2016 -8.2580 5.5862 23 6 -3.2888 -8.4494 4.5348 24 6 -3.0119 -7.4424 3.6799 25 7 -3.6051 -6.2237 3.8305 26 6 -1.6923 -3.6430 2.2430 27 6 1.0924 -3.4793 -0.8302 28 6 2.1016 -3.7732 0.2816 29 1 -0.4850 0.8367 -0.0733 30 1 -0.2625 -1.3737 1.3247 31 1 0.5770 -2.5659 2.3456 32 1 -1.0712 -2.7007 -0.9278 33 1 -2.2661 -2.0363 0.2117 34 1 -2.1286 -4.9316 -0.7464 35 1 -3.3148 -3.7141 -1.2756 36 1 -4.2338 -5.1975 0.5117 37 1 -4.1525 -3.4978 1.0359 38 1 -5.5004 -6.8879 6.5550 39 1 -4.4229 -9.0676 6.2659 40 1 -2.8093 -9.4088 4.4078 41 1 -2.3120 -7.6018 2.8730 42 1 -2.2500 -2.7476 2.5172 43 1 -1.0447 -3.9348 3.0698 44 1 0.1710 -4.0614 -0.8404 45 1 1.4870 -3.2062 -1.8090 46 1 3.1601 -3.6937 0.0344 47 1 1.8442 -4.5487 1.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602777585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:21 Heat of formation + Delta-G solvation = 128.753021 kcal Electronic energy + Delta-G solvation = -28101.402953 eV Core-core repulsion = 24479.163134 eV Total energy + Delta-G solvation = -3622.239819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.59035 -40.34054 -39.11808 -37.92382 -35.23123 -34.20618 -33.83494 -32.69272 -31.78905 -29.53335 -28.07464 -27.07298 -25.22618 -25.03704 -24.23650 -23.85962 -22.73855 -22.21843 -20.69397 -20.38022 -19.05803 -18.19270 -17.92824 -17.56217 -16.95104 -16.65849 -16.34069 -16.09281 -15.87481 -15.64174 -15.38234 -14.89041 -14.68515 -14.27982 -13.98871 -13.57802 -13.47266 -13.44340 -13.28125 -13.06243 -12.96381 -12.83948 -12.58817 -12.50902 -12.38062 -12.19929 -12.07227 -11.87751 -11.73892 -11.55477 -11.50719 -11.43864 -11.00448 -10.92562 -10.55252 -10.43535 -9.81819 -9.07237 -9.04345 -7.98857 -6.12817 -0.27466 0.11350 1.27598 1.40611 1.44382 1.50566 1.62073 2.39742 2.41749 2.89850 3.02848 3.20619 3.45630 3.52882 3.66900 3.77082 3.82756 3.90896 4.07132 4.11324 4.14477 4.29260 4.37723 4.52815 4.55489 4.64906 4.69861 4.73377 4.77765 4.84491 4.90797 4.96454 4.99713 5.02475 5.06742 5.10114 5.12303 5.19544 5.24572 5.31105 5.44950 5.48552 5.49320 5.58608 5.60197 5.79624 5.91684 6.05257 6.26692 6.45979 6.60585 6.88811 7.45230 7.47286 8.91266 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.003027 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.307782 B = 9248.360076 C = 9517.220017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.030 3.970 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.048 0.952 9 C 0.027 3.973 10 C 0.082 3.918 11 N -0.519 5.519 12 C 0.069 3.931 13 C -0.105 4.105 14 C -0.098 4.098 15 C 0.024 3.976 16 H 0.116 0.884 17 C 0.150 3.850 18 N -0.287 5.287 19 N -0.350 5.350 20 C 0.180 3.820 21 C -0.111 4.111 22 C -0.058 4.058 23 C -0.124 4.124 24 C 0.043 3.957 25 N -0.391 5.391 26 C 0.076 3.924 27 C -0.183 4.183 28 C -0.189 4.189 29 H 0.259 0.741 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.003 0.997 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.169 0.831 39 H 0.191 0.809 40 H 0.201 0.799 41 H 0.194 0.806 42 H 0.010 0.990 43 H 0.061 0.939 44 H 0.102 0.898 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 -22.167 7.432 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.171 4.171 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.067 0.933 9 C 0.026 3.974 10 C -0.045 4.045 11 N -0.243 5.243 12 C -0.059 4.059 13 C -0.143 4.143 14 C -0.137 4.137 15 C 0.003 3.997 16 H 0.134 0.866 17 C -0.114 4.114 18 N -0.126 5.126 19 N -0.196 5.196 20 C -0.069 4.069 21 C -0.132 4.132 22 C -0.083 4.083 23 C -0.145 4.145 24 C -0.078 4.078 25 N -0.070 5.070 26 C -0.053 4.053 27 C -0.221 4.221 28 C -0.226 4.226 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.021 0.979 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.187 0.813 39 H 0.208 0.792 40 H 0.218 0.782 41 H 0.211 0.789 42 H 0.029 0.971 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.442 -20.959 7.597 24.211 hybrid contribution 0.783 1.376 0.009 1.583 sum -8.659 -19.583 7.605 22.723 Atomic orbital electron populations 1.69884 1.06662 1.26981 1.49116 1.25563 0.95573 1.01553 0.94395 0.85792 0.78611 0.79668 0.78614 1.19920 1.21067 1.20077 1.20876 0.94913 0.91655 1.47724 0.93327 1.18953 0.95071 0.87867 0.95468 1.21711 0.91701 0.96209 0.94910 1.61971 1.12472 1.44922 1.04913 1.21977 0.94360 0.95025 0.94489 1.21590 0.96701 0.99009 0.96988 1.21516 0.97122 1.01454 0.93573 1.19532 0.92681 1.00258 0.87194 0.86558 1.24903 1.04041 0.81866 1.00615 1.74083 1.08008 1.26294 1.04174 1.74829 1.24921 1.04546 1.15256 1.22978 0.94377 0.96222 0.93341 1.20663 1.03740 0.90017 0.98812 1.21793 0.92696 0.96656 0.97140 1.21601 0.98964 1.00118 0.93783 1.22509 0.99691 0.81732 1.03853 1.43863 1.30410 1.11085 1.21605 1.21844 0.94192 0.96001 0.93298 1.22955 1.00039 1.06475 0.92645 1.22767 0.95273 1.01441 1.03141 0.93093 0.90659 0.95331 0.91030 0.97877 0.89750 0.90184 0.90060 0.93310 0.81312 0.79157 0.78233 0.78885 0.97143 0.92056 0.88012 0.92999 0.91716 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.00 10.69 21.45 0.23 -48.77 16 2 C 0.03 1.60 5.15 84.65 0.44 2.04 16 3 Si 0.95 43.32 29.56 68.60 2.03 45.35 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.51 -28.20 9.03 25.60 0.23 -27.97 16 8 H 0.05 2.68 7.85 -2.91 -0.02 2.66 16 9 C 0.03 1.34 2.17 -52.93 -0.11 1.22 16 10 C 0.08 3.91 4.87 86.30 0.42 4.33 16 11 N -0.52 -20.33 3.59 -896.35 -3.22 -23.55 16 12 C 0.07 2.71 4.28 86.33 0.37 3.08 16 13 C -0.11 -3.00 6.09 30.65 0.19 -2.81 16 14 C -0.10 -2.71 5.27 30.68 0.16 -2.55 16 15 C 0.02 0.69 2.78 -11.48 -0.03 0.66 16 16 H 0.12 2.65 7.53 -2.39 -0.02 2.63 16 17 C 0.15 4.58 6.65 137.71 0.92 5.50 16 18 N -0.29 -10.80 12.19 -49.69 -0.61 -11.41 16 19 N -0.35 -12.51 12.31 -55.40 -0.68 -13.19 16 20 C 0.18 4.83 7.92 134.07 1.06 5.89 16 21 C -0.11 -1.76 10.11 22.38 0.23 -1.53 16 22 C -0.06 -0.43 10.07 22.32 0.22 -0.21 16 23 C -0.12 -0.84 9.98 22.08 0.22 -0.62 16 24 C 0.04 0.60 10.78 83.23 0.90 1.49 16 25 N -0.39 -9.46 2.95 -342.88 -1.01 -10.47 16 26 C 0.08 2.74 4.69 86.33 0.40 3.14 16 27 C -0.18 -8.07 8.14 30.59 0.25 -7.82 16 28 C -0.19 -8.09 9.93 30.59 0.30 -7.78 16 29 H 0.26 13.90 8.32 -92.71 -0.77 13.13 16 30 H 0.08 4.12 4.83 -2.39 -0.01 4.11 16 31 H 0.03 1.35 7.78 -2.39 -0.02 1.33 16 32 H 0.07 3.16 5.76 -2.39 -0.01 3.14 16 33 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.19 -0.23 8.06 -2.91 -0.02 -0.25 16 40 H 0.20 -0.38 8.06 -2.91 -0.02 -0.40 16 41 H 0.19 1.59 7.63 -2.91 -0.02 1.57 16 42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.06 2.19 7.93 -2.39 -0.02 2.18 16 44 H 0.10 4.12 5.56 -2.39 -0.01 4.10 16 45 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 46 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 47 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 Total: -1.00 -72.69 371.17 3.86 -68.83 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.97 Total: 17.16 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 6.16 Total: -23.95 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -5.29 Total: -107.39 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -72.69 3.86 -68.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602777585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.584 kcal (2) G-P(sol) polarization free energy of solvation -72.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds