Wall clock time and date at job start Tue Mar 31 2020 14:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35498 * 117.00026 * 2 1 4 4 N 1.31766 * 120.12011 * 359.97438 * 3 2 1 5 5 C 1.32652 * 122.66980 * 179.97438 * 4 3 2 6 6 C 1.36083 * 121.97013 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.59855 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.47208 * 266.48448 * 7 6 5 9 9 C 1.46846 * 110.99979 * 64.21657 * 8 7 6 10 10 C 1.53034 * 109.52250 * 174.16188 * 9 8 7 11 11 C 1.53117 * 109.27957 * 59.18051 * 10 9 8 12 12 C 1.53122 * 109.16078 * 302.34506 * 11 10 9 13 13 H 1.08999 * 109.50072 * 297.71338 * 12 11 10 14 14 C 1.50703 * 109.50358 * 177.63829 * 12 11 10 15 15 H 1.07998 * 119.99540 * 275.78829 * 14 12 11 16 16 C 1.37874 * 120.00036 * 95.78959 * 14 12 11 17 17 N 1.31517 * 119.99643 * 174.63624 * 16 14 12 18 18 Si 1.86794 * 120.00078 * 354.63230 * 16 14 12 19 19 H 1.48502 * 109.46747 * 94.11379 * 18 16 14 20 20 H 1.48507 * 109.47085 * 214.10937 * 18 16 14 21 21 H 1.48500 * 109.47412 * 334.11419 * 18 16 14 22 22 C 1.46855 * 110.99987 * 300.00979 * 8 7 6 23 23 C 1.40811 * 118.80400 * 0.02562 * 6 5 4 24 24 C 1.40190 * 122.18342 * 180.02562 * 23 6 5 25 25 C 1.36272 * 119.47707 * 179.97438 * 24 23 6 26 26 C 1.39301 * 120.98543 * 359.97438 * 25 24 23 27 27 C 1.36263 * 121.05547 * 0.02562 * 26 25 24 28 28 C 1.40166 * 119.53154 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46928 * 299.99986 * 1 2 3 30 30 H 1.08993 * 109.47239 * 59.99926 * 1 2 3 31 31 H 1.08996 * 109.46789 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.01812 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.47257 * 26.48157 * 7 6 5 34 34 H 1.08997 * 109.47152 * 146.48504 * 7 6 5 35 35 H 1.09000 * 109.46055 * 294.17520 * 9 8 7 36 36 H 1.09000 * 109.46400 * 54.14297 * 9 8 7 37 37 H 1.09004 * 109.50238 * 179.12023 * 10 9 8 38 38 H 1.08996 * 109.50565 * 299.23276 * 10 9 8 39 39 H 1.09004 * 109.52323 * 62.25110 * 11 10 9 40 40 H 1.08999 * 109.52106 * 182.37600 * 11 10 9 41 41 H 0.97000 * 119.99861 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.45450 * 305.85129 * 22 8 7 43 43 H 1.08991 * 109.46384 * 65.81764 * 22 8 7 44 44 H 1.08005 * 120.26751 * 359.97438 * 24 23 6 45 45 H 1.08001 * 119.50659 * 180.02562 * 25 24 23 46 46 H 1.08008 * 119.47630 * 180.02562 * 26 25 24 47 47 H 1.08007 * 120.23791 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3288 2.3139 -0.0005 5 6 1.8779 3.5214 0.0000 6 6 3.2270 3.6995 0.0015 7 6 3.8177 5.0859 0.0014 8 7 4.0896 5.5023 -1.3809 9 6 2.8446 5.6123 -2.1518 10 6 3.1500 6.1856 -3.5374 11 6 4.1391 5.2656 -4.2584 12 6 5.4076 5.1294 -3.4117 13 1 5.8801 6.1057 -3.3044 14 6 6.3633 4.1793 -4.0864 15 1 6.2605 3.1145 -3.9386 16 6 7.3688 4.6697 -4.8923 17 7 8.2661 3.8506 -5.3960 18 14 7.4565 6.4972 -5.2689 19 1 8.3682 7.1587 -4.3011 20 1 7.9711 6.6943 -6.6479 21 1 6.1002 7.0914 -5.1569 22 6 5.0367 4.5866 -2.0298 23 6 4.0611 2.5650 0.0021 24 6 5.4594 2.6662 0.0043 25 6 6.2138 1.5314 0.0053 26 6 5.6164 0.2730 0.0048 27 6 4.2604 0.1387 0.0027 28 6 3.4526 1.2842 0.0016 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.2350 4.3893 -0.0009 33 1 3.1134 5.7809 0.4584 34 1 4.7477 5.0846 0.5700 35 1 2.3950 4.6250 -2.2583 36 1 2.1516 6.2724 -1.6303 37 1 2.2280 6.2525 -4.1149 38 1 3.5869 7.1786 -3.4322 39 1 3.6874 4.2835 -4.3985 40 1 4.3920 5.6921 -5.2291 41 1 8.9733 4.1955 -5.9633 42 1 5.9359 4.5020 -1.4194 43 1 4.5769 3.6043 -2.1368 44 1 5.9350 3.6359 0.0051 45 1 7.2910 1.6088 0.0073 46 1 6.2378 -0.6103 0.0060 47 1 3.8111 -0.8435 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602884580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:23 Heat of formation + Delta-G solvation = 20.542200 kcal Electronic energy + Delta-G solvation = -28776.529207 eV Core-core repulsion = 25117.304263 eV Total energy + Delta-G solvation = -3659.224943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25738 -39.06976 -38.09867 -36.88280 -34.32773 -32.65099 -31.45015 -31.12334 -30.29670 -29.46255 -27.57747 -25.90721 -25.03120 -23.63565 -23.47955 -22.59080 -21.26006 -20.51957 -18.68322 -18.51821 -17.86856 -17.06051 -16.83754 -16.14015 -15.56976 -15.18973 -15.14244 -14.57770 -14.31413 -14.06049 -13.99938 -13.81215 -13.50505 -13.35698 -13.02661 -12.70227 -12.57280 -12.50925 -12.10294 -12.06406 -11.88113 -11.64648 -11.34043 -11.19476 -11.11655 -11.04108 -10.87040 -10.58045 -10.13757 -9.79698 -9.61751 -9.59145 -9.46352 -9.27172 -8.97366 -8.91870 -8.46965 -7.95217 -7.55131 -6.05618 -4.04055 0.53304 0.97761 2.02430 2.91404 3.14840 3.31602 3.40609 3.46066 4.11186 4.33125 4.45209 4.46152 4.68362 4.79712 4.92800 5.01867 5.08195 5.17338 5.22823 5.25170 5.28294 5.42063 5.47244 5.49963 5.55681 5.63269 5.76515 5.83276 5.92827 5.99610 6.03593 6.09445 6.15707 6.22036 6.35407 6.40962 6.43614 6.54051 6.56010 6.63120 6.72849 6.85099 6.92820 6.94321 7.16240 7.32398 7.47479 7.58412 7.61478 7.87797 7.90863 8.56310 9.00212 9.58800 11.07643 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.004445 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.923370 B = 6298.006927 C = 7216.727920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.304 6.304 3 C 0.354 3.646 4 N -0.552 5.552 5 C 0.120 3.880 6 C -0.185 4.185 7 C 0.100 3.900 8 N -0.529 5.529 9 C 0.059 3.941 10 C -0.120 4.120 11 C -0.114 4.114 12 C 0.021 3.979 13 H 0.038 0.962 14 C -0.509 4.509 15 H 0.069 0.931 16 C 0.073 3.927 17 N -0.901 5.901 18 Si 0.874 3.126 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.259 1.259 22 C 0.067 3.933 23 C 0.017 3.983 24 C -0.111 4.111 25 C -0.084 4.084 26 C -0.124 4.124 27 C -0.078 4.078 28 C -0.113 4.113 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.029 0.971 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.262 0.738 42 H 0.070 0.930 43 H 0.030 0.970 44 H 0.143 0.857 45 H 0.130 0.870 46 H 0.126 0.874 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.966 -3.704 13.695 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.210 6.210 3 C 0.162 3.838 4 N -0.278 5.278 5 C -0.023 4.023 6 C -0.189 4.189 7 C -0.029 4.029 8 N -0.251 5.251 9 C -0.069 4.069 10 C -0.158 4.158 11 C -0.152 4.152 12 C 0.001 3.999 13 H 0.056 0.944 14 C -0.547 4.547 15 H 0.088 0.912 16 C -0.129 4.129 17 N -0.539 5.539 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.184 1.184 22 C -0.059 4.059 23 C 0.012 3.988 24 C -0.129 4.129 25 C -0.104 4.104 26 C -0.143 4.143 27 C -0.097 4.097 28 C -0.116 4.116 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.167 0.833 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.160 0.840 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.393 -3.454 13.573 18.702 hybrid contribution 0.328 0.190 -0.541 0.661 sum -12.065 -3.264 13.032 18.057 Atomic orbital electron populations 1.22867 0.77133 1.02835 1.02607 1.86156 1.22948 1.24619 1.87230 1.19915 0.88233 0.84902 0.90733 1.67054 1.40867 0.98483 1.21358 1.21556 0.92397 0.92763 0.95599 1.21281 0.94652 0.97536 1.05455 1.21123 1.00506 0.88935 0.92288 1.62523 1.12219 1.49528 1.00837 1.22032 0.91151 0.98910 0.94778 1.21673 0.99138 1.00243 0.94730 1.21897 0.96733 0.97471 0.99116 1.19161 0.93224 0.97083 0.90385 0.94381 1.20935 1.11438 0.94291 1.28042 0.91238 1.25024 0.94932 0.97481 0.95435 1.69923 1.14878 1.35076 1.34068 0.86889 0.78973 0.86463 0.77483 1.20445 1.21752 1.18377 1.22538 0.93555 0.92930 0.96891 1.17830 0.94103 0.91005 0.95887 1.21239 0.91811 1.00032 0.99785 1.21061 1.00725 0.92223 0.96347 1.20914 0.94718 0.97859 1.00762 1.20860 0.93622 0.97455 0.97808 1.17952 0.90542 0.94764 1.08299 0.92271 0.92154 0.88652 0.83256 0.90143 0.89865 0.95242 0.92013 0.93038 0.91976 0.93506 0.92981 0.92788 0.91196 0.95158 0.83990 0.85222 0.85605 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.39 101.05 1.05 1.45 16 2 O -0.30 -4.04 9.78 -18.19 -0.18 -4.22 16 3 C 0.35 5.36 7.54 -16.51 -0.12 5.23 16 4 N -0.55 -8.26 9.20 -13.25 -0.12 -8.38 16 5 C 0.12 1.70 9.39 -17.97 -0.17 1.53 16 6 C -0.18 -2.71 4.05 -104.43 -0.42 -3.13 16 7 C 0.10 1.38 5.31 -4.98 -0.03 1.35 16 8 N -0.53 -8.90 4.86 -236.12 -1.15 -10.04 16 9 C 0.06 0.95 4.85 -3.84 -0.02 0.93 16 10 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 11 C -0.11 -2.45 5.07 -26.61 -0.14 -2.58 16 12 C 0.02 0.48 1.80 -91.69 -0.17 0.32 16 13 H 0.04 0.92 5.59 -51.93 -0.29 0.63 16 14 C -0.51 -14.04 8.86 -34.44 -0.31 -14.35 16 15 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 18 Si 0.87 21.52 26.61 -169.99 -4.52 16.99 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.12 6.10 56.52 0.34 -5.78 16 22 C 0.07 1.35 3.06 -3.83 -0.01 1.34 16 23 C 0.02 0.26 4.68 -106.83 -0.50 -0.24 16 24 C -0.11 -1.68 7.33 -39.56 -0.29 -1.97 16 25 C -0.08 -1.18 9.95 -39.89 -0.40 -1.58 16 26 C -0.12 -1.62 9.95 -39.90 -0.40 -2.02 16 27 C -0.08 -1.07 9.59 -39.57 -0.38 -1.45 16 28 C -0.11 -1.75 5.75 -106.74 -0.61 -2.37 16 29 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 30 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.08 0.93 8.02 -51.93 -0.42 0.51 16 34 H 0.08 1.08 6.74 -51.93 -0.35 0.73 16 35 H 0.03 0.50 6.69 -51.93 -0.35 0.16 16 36 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.16 7.14 -51.93 -0.37 0.79 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.07 1.39 5.74 -51.93 -0.30 1.09 16 43 H 0.03 0.65 6.05 -51.93 -0.31 0.34 16 44 H 0.14 2.09 4.55 -52.48 -0.24 1.85 16 45 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 47 H 0.13 1.56 7.68 -52.48 -0.40 1.16 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -31.56 359.48 -9.81 -41.37 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.87 Total: 3.20 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -3.17 Total: -17.82 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.50 Total: -44.95 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.18 Total: -4.22 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.52 Total: 16.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.56 -9.81 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602884580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.915 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds