Wall clock time and date at job start Tue Mar 31 2020 14:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35498 * 117.00026 * 2 1 4 4 N 1.31766 * 120.12011 * 359.97438 * 3 2 1 5 5 C 1.32652 * 122.66980 * 179.97438 * 4 3 2 6 6 C 1.36083 * 121.97013 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.59855 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.47208 * 266.48448 * 7 6 5 9 9 C 1.46846 * 110.99979 * 64.21657 * 8 7 6 10 10 C 1.53034 * 109.52250 * 174.16188 * 9 8 7 11 11 C 1.53117 * 109.27957 * 59.18051 * 10 9 8 12 12 C 1.53122 * 109.16078 * 302.34506 * 11 10 9 13 13 H 1.08999 * 109.50072 * 297.71338 * 12 11 10 14 14 C 1.50703 * 109.50358 * 177.63829 * 12 11 10 15 15 H 1.07998 * 119.99540 * 275.78829 * 14 12 11 16 16 C 1.37874 * 120.00036 * 95.78959 * 14 12 11 17 17 N 1.31517 * 119.99643 * 174.63624 * 16 14 12 18 18 Si 1.86794 * 120.00078 * 354.63230 * 16 14 12 19 19 H 1.48502 * 109.46747 * 94.11379 * 18 16 14 20 20 H 1.48507 * 109.47085 * 214.10937 * 18 16 14 21 21 H 1.48500 * 109.47412 * 334.11419 * 18 16 14 22 22 C 1.46855 * 110.99987 * 300.00979 * 8 7 6 23 23 C 1.40811 * 118.80400 * 0.02562 * 6 5 4 24 24 C 1.40190 * 122.18342 * 180.02562 * 23 6 5 25 25 C 1.36272 * 119.47707 * 179.97438 * 24 23 6 26 26 C 1.39301 * 120.98543 * 359.97438 * 25 24 23 27 27 C 1.36263 * 121.05547 * 0.02562 * 26 25 24 28 28 C 1.40166 * 119.53154 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46928 * 299.99986 * 1 2 3 30 30 H 1.08993 * 109.47239 * 59.99926 * 1 2 3 31 31 H 1.08996 * 109.46789 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.01812 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.47257 * 26.48157 * 7 6 5 34 34 H 1.08997 * 109.47152 * 146.48504 * 7 6 5 35 35 H 1.09000 * 109.46055 * 294.17520 * 9 8 7 36 36 H 1.09000 * 109.46400 * 54.14297 * 9 8 7 37 37 H 1.09004 * 109.50238 * 179.12023 * 10 9 8 38 38 H 1.08996 * 109.50565 * 299.23276 * 10 9 8 39 39 H 1.09004 * 109.52323 * 62.25110 * 11 10 9 40 40 H 1.08999 * 109.52106 * 182.37600 * 11 10 9 41 41 H 0.97000 * 119.99861 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.45450 * 305.85129 * 22 8 7 43 43 H 1.08991 * 109.46384 * 65.81764 * 22 8 7 44 44 H 1.08005 * 120.26751 * 359.97438 * 24 23 6 45 45 H 1.08001 * 119.50659 * 180.02562 * 25 24 23 46 46 H 1.08008 * 119.47630 * 180.02562 * 26 25 24 47 47 H 1.08007 * 120.23791 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3288 2.3139 -0.0005 5 6 1.8779 3.5214 0.0000 6 6 3.2270 3.6995 0.0015 7 6 3.8177 5.0859 0.0014 8 7 4.0896 5.5023 -1.3809 9 6 2.8446 5.6123 -2.1518 10 6 3.1500 6.1856 -3.5374 11 6 4.1391 5.2656 -4.2584 12 6 5.4076 5.1294 -3.4117 13 1 5.8801 6.1057 -3.3044 14 6 6.3633 4.1793 -4.0864 15 1 6.2605 3.1145 -3.9386 16 6 7.3688 4.6697 -4.8923 17 7 8.2661 3.8506 -5.3960 18 14 7.4565 6.4972 -5.2689 19 1 8.3682 7.1587 -4.3011 20 1 7.9711 6.6943 -6.6479 21 1 6.1002 7.0914 -5.1569 22 6 5.0367 4.5866 -2.0298 23 6 4.0611 2.5650 0.0021 24 6 5.4594 2.6662 0.0043 25 6 6.2138 1.5314 0.0053 26 6 5.6164 0.2730 0.0048 27 6 4.2604 0.1387 0.0027 28 6 3.4526 1.2842 0.0016 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.2350 4.3893 -0.0009 33 1 3.1134 5.7809 0.4584 34 1 4.7477 5.0846 0.5700 35 1 2.3950 4.6250 -2.2583 36 1 2.1516 6.2724 -1.6303 37 1 2.2280 6.2525 -4.1149 38 1 3.5869 7.1786 -3.4322 39 1 3.6874 4.2835 -4.3985 40 1 4.3920 5.6921 -5.2291 41 1 8.9733 4.1955 -5.9633 42 1 5.9359 4.5020 -1.4194 43 1 4.5769 3.6043 -2.1368 44 1 5.9350 3.6359 0.0051 45 1 7.2910 1.6088 0.0073 46 1 6.2378 -0.6103 0.0060 47 1 3.8111 -0.8435 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602884580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:22 Heat of formation + Delta-G solvation = -0.596570 kcal Electronic energy + Delta-G solvation = -28777.445853 eV Core-core repulsion = 25117.304263 eV Total energy + Delta-G solvation = -3660.141589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35286 -40.25842 -39.32170 -37.99652 -35.84211 -34.43661 -32.81762 -32.29040 -31.85252 -30.66718 -28.48922 -27.10333 -26.92130 -24.75826 -24.62417 -23.91455 -22.81584 -21.81332 -20.25707 -19.57159 -18.97735 -18.91105 -18.13641 -17.18494 -16.93751 -16.45483 -16.20910 -15.89629 -15.81392 -15.52372 -15.17062 -15.04262 -14.71599 -14.61349 -14.51152 -14.33007 -14.14226 -13.82130 -13.31754 -13.18067 -12.93121 -12.86375 -12.79096 -12.72658 -12.58624 -12.22760 -12.17318 -12.04117 -11.75663 -11.70512 -11.25298 -11.08895 -10.86484 -10.70811 -10.59031 -10.56449 -10.09094 -9.27106 -8.68716 -8.26830 -6.29333 -0.57048 -0.12944 0.91100 1.36074 1.38701 1.51522 1.94367 2.05897 2.37942 2.95952 3.07945 3.22408 3.31273 3.57808 3.74630 3.86572 3.97674 4.06516 4.15458 4.17881 4.25947 4.32239 4.39192 4.40441 4.44678 4.45385 4.55382 4.68149 4.70483 4.72850 4.84161 4.87969 4.89659 4.95660 4.98663 5.02582 5.09385 5.13407 5.23797 5.26263 5.36812 5.48261 5.51947 5.57772 5.67955 5.76182 5.87152 6.13816 6.15541 6.27430 6.40965 6.78062 6.81273 7.36518 8.90303 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.004445 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.923370 B = 6298.006927 C = 7216.727920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C 0.345 3.655 4 N -0.560 5.560 5 C 0.119 3.881 6 C -0.194 4.194 7 C 0.103 3.897 8 N -0.529 5.529 9 C 0.061 3.939 10 C -0.114 4.114 11 C -0.113 4.113 12 C 0.018 3.982 13 H 0.036 0.964 14 C -0.509 4.509 15 H 0.023 0.977 16 C 0.015 3.985 17 N -0.950 5.950 18 Si 0.939 3.061 19 H -0.269 1.269 20 H -0.291 1.291 21 H -0.241 1.241 22 C 0.087 3.913 23 C 0.000 4.000 24 C -0.129 4.129 25 C -0.094 4.094 26 C -0.128 4.128 27 C -0.083 4.083 28 C -0.137 4.137 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.177 0.823 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.018 0.982 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.039 0.961 41 H 0.264 0.736 42 H 0.065 0.935 43 H 0.008 0.992 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.153 0.847 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.939 -1.926 14.893 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.217 6.217 3 C 0.154 3.846 4 N -0.286 5.286 5 C -0.024 4.024 6 C -0.198 4.198 7 C -0.025 4.025 8 N -0.251 5.251 9 C -0.067 4.067 10 C -0.152 4.152 11 C -0.151 4.151 12 C -0.001 4.001 13 H 0.054 0.946 14 C -0.547 4.547 15 H 0.041 0.959 16 C -0.181 4.181 17 N -0.591 5.591 18 Si 0.763 3.237 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.164 1.164 22 C -0.041 4.041 23 C -0.005 4.005 24 C -0.146 4.146 25 C -0.113 4.113 26 C -0.146 4.146 27 C -0.102 4.102 28 C -0.140 4.140 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.194 0.806 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.036 0.964 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.027 0.973 44 H 0.158 0.842 45 H 0.159 0.841 46 H 0.171 0.829 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.398 -1.681 14.795 20.713 hybrid contribution 0.896 -0.529 -0.888 1.368 sum -13.502 -2.210 13.907 19.509 Atomic orbital electron populations 1.23129 0.75315 1.04930 1.02446 1.86147 1.24746 1.23856 1.86908 1.20091 0.88377 0.85571 0.90587 1.67124 1.40959 0.98759 1.21745 1.21994 0.92590 0.93307 0.94500 1.21365 0.94882 0.97542 1.06035 1.21229 1.01678 0.89173 0.90389 1.62465 1.12284 1.48268 1.02108 1.22101 0.91198 0.99087 0.94324 1.21636 0.98929 0.99148 0.95473 1.21770 0.96918 0.97700 0.98703 1.19132 0.93134 0.95624 0.92229 0.94596 1.21165 1.12460 0.93011 1.28093 0.95890 1.25872 0.94543 1.02394 0.95332 1.70072 1.16031 1.37457 1.35505 0.85852 0.79948 0.80617 0.77256 1.19437 1.21722 1.16398 1.22107 0.94338 0.92318 0.95315 1.18074 0.94449 0.91787 0.96151 1.21315 0.92100 1.00323 1.00889 1.21363 1.01496 0.92599 0.95890 1.21225 0.94935 0.98435 1.00002 1.21125 0.93905 0.97851 0.97363 1.18249 0.91297 0.95359 1.09079 0.91932 0.92730 0.85495 0.80609 0.86810 0.89485 0.96411 0.88066 0.90519 0.91427 0.95259 0.94257 0.92703 0.91709 0.97339 0.84244 0.84073 0.82933 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.39 113.37 1.18 1.83 16 2 O -0.31 -8.01 9.78 -87.99 -0.86 -8.87 16 3 C 0.35 10.30 7.54 85.39 0.64 10.95 16 4 N -0.56 -16.07 9.20 -309.05 -2.84 -18.91 16 5 C 0.12 3.13 9.39 84.07 0.79 3.92 16 6 C -0.19 -5.43 4.05 -19.74 -0.08 -5.51 16 7 C 0.10 2.58 5.31 85.55 0.45 3.03 16 8 N -0.53 -16.59 4.86 -900.95 -4.38 -20.97 16 9 C 0.06 1.74 4.85 86.32 0.42 2.16 16 10 C -0.11 -3.66 6.09 30.64 0.19 -3.47 16 11 C -0.11 -4.76 5.07 30.67 0.16 -4.61 16 12 C 0.02 0.84 1.80 -11.49 -0.02 0.82 16 13 H 0.04 1.69 5.59 -2.39 -0.01 1.67 16 14 C -0.51 -29.17 8.86 25.60 0.23 -28.94 16 15 H 0.02 1.48 8.06 -2.91 -0.02 1.46 16 16 C 0.02 0.90 5.47 84.65 0.46 1.36 16 17 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 18 Si 0.94 44.54 26.61 68.60 1.83 46.37 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.24 -10.59 6.10 99.48 0.61 -9.98 16 22 C 0.09 3.47 3.06 86.32 0.26 3.74 16 23 C 0.00 0.01 4.68 -21.29 -0.10 -0.09 16 24 C -0.13 -3.99 7.33 22.29 0.16 -3.83 16 25 C -0.09 -2.71 9.95 22.07 0.22 -2.49 16 26 C -0.13 -3.34 9.95 22.06 0.22 -3.12 16 27 C -0.08 -2.28 9.59 22.28 0.21 -2.07 16 28 C -0.14 -4.28 5.75 -21.24 -0.12 -4.40 16 29 H 0.06 1.09 8.11 -2.39 -0.02 1.07 16 30 H 0.05 1.05 8.11 -2.39 -0.02 1.03 16 31 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.11 2.12 8.02 -2.39 -0.02 2.10 16 34 H 0.09 2.12 6.74 -2.39 -0.02 2.10 16 35 H 0.02 0.56 6.69 -2.39 -0.02 0.55 16 36 H 0.10 2.19 8.09 -2.39 -0.02 2.17 16 37 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.04 1.72 7.14 -2.39 -0.02 1.70 16 41 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.06 2.62 5.74 -2.38 -0.01 2.61 16 43 H 0.01 0.37 6.05 -2.39 -0.01 0.36 16 44 H 0.14 4.24 4.55 -2.91 -0.01 4.23 16 45 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 46 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 47 H 0.15 3.43 7.68 -2.91 -0.02 3.41 16 Total: -1.00 -71.03 359.48 0.19 -70.84 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.87 Total: 21.56 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 5.27 Total: -30.70 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -6.92 Total: -99.19 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.86 Total: -8.87 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.83 Total: 46.37 kcal Total: -71.03 0.19 -70.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602884580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.241 kcal (2) G-P(sol) polarization free energy of solvation -71.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds