Wall clock time and date at job start Tue Mar 31 2020 14:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.50703 * 109.47207 * 125.29585 * 14 13 12 16 16 C 1.38234 * 119.99848 * 269.72568 * 15 14 13 17 17 C 1.38231 * 120.00136 * 179.74256 * 16 15 14 18 18 C 1.38237 * 119.99561 * 0.53229 * 17 16 15 19 19 C 1.50705 * 119.99855 * 179.76886 * 18 17 16 20 20 C 1.54261 * 110.03471 * 57.14322 * 19 18 17 21 21 C 1.54888 * 104.19778 * 217.10683 * 20 19 18 22 22 C 1.54891 * 102.74723 * 37.94189 * 21 20 19 23 23 C 1.53877 * 110.03052 * 299.97482 * 19 18 17 24 24 C 1.38233 * 120.00121 * 359.74123 * 18 17 16 25 25 C 1.38230 * 120.00278 * 359.97438 * 24 18 17 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 33 33 H 1.08997 * 109.47170 * 245.29472 * 14 13 12 34 34 H 1.08999 * 109.46977 * 5.29533 * 14 13 12 35 35 H 1.08013 * 119.99903 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.00175 * 180.29494 * 17 16 15 37 37 H 1.09000 * 110.01640 * 178.58781 * 19 18 17 38 38 H 1.09005 * 110.48748 * 335.78415 * 20 19 18 39 39 H 1.09001 * 110.48895 * 98.42532 * 20 19 18 40 40 H 1.09001 * 110.75835 * 279.63180 * 21 20 19 41 41 H 1.08993 * 110.75860 * 156.25493 * 21 20 19 42 42 H 1.09004 * 110.48626 * 203.38308 * 22 21 20 43 43 H 1.08996 * 110.48751 * 80.74083 * 22 21 20 44 44 H 1.08997 * 110.03304 * 238.57398 * 23 19 18 45 45 H 1.09001 * 110.03165 * 359.95470 * 23 19 18 46 46 H 1.07996 * 119.99912 * 179.97438 * 24 18 17 47 47 H 1.08002 * 120.00594 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9688 -7.3968 -1.3882 15 6 -0.6790 -8.7852 -0.8788 16 6 0.3775 -9.5068 -1.4021 17 6 0.6467 -10.7783 -0.9311 18 6 -0.1474 -11.3323 0.0554 19 6 0.1429 -12.7205 0.5652 20 6 1.5872 -12.7951 1.1020 21 6 2.0728 -14.2073 0.6908 22 6 1.4400 -14.3916 -0.7109 23 6 0.0493 -13.7356 -0.5874 24 6 -1.2073 -10.6129 0.5748 25 6 -1.4729 -9.3392 0.1080 26 7 -0.2825 -6.2992 0.6943 27 7 0.4867 -5.3442 1.0829 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6849 -3.7190 -0.8822 31 1 2.6842 -3.7101 0.8977 32 1 0.8827 -5.3105 -2.0986 33 1 -2.0376 -7.1973 -1.3110 34 1 -0.6593 -7.3202 -2.4305 35 1 0.9950 -9.0758 -2.1764 36 1 1.4751 -11.3402 -1.3367 37 1 -0.5630 -12.9839 1.3529 38 1 2.2070 -12.0283 0.6372 39 1 1.5970 -12.6892 2.1868 40 1 1.7006 -14.9610 1.3847 41 1 3.1606 -14.2395 0.6308 42 1 1.3424 -15.4508 -0.9491 43 1 2.0360 -13.8827 -1.4684 44 1 -0.7015 -14.4920 -0.3588 45 1 -0.2069 -13.2243 -1.5153 46 1 -1.8280 -11.0459 1.3452 47 1 -2.3013 -8.7772 0.5134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603243573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:08 Heat of formation + Delta-G solvation = 120.205613 kcal Electronic energy + Delta-G solvation = -26057.474015 eV Core-core repulsion = 22434.863553 eV Total energy + Delta-G solvation = -3622.610462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.85897 -40.24592 -38.05676 -35.31344 -34.37432 -32.13088 -31.69861 -31.22867 -29.82988 -29.09470 -28.94780 -26.17491 -25.70103 -23.21393 -22.79283 -22.40728 -21.38768 -21.02177 -20.37467 -19.90346 -17.50391 -17.06094 -16.82264 -16.27137 -16.15646 -15.38238 -15.08659 -14.81721 -14.55767 -14.50329 -13.82100 -13.77572 -13.67616 -13.54223 -13.17172 -13.04169 -12.87130 -12.53300 -12.29935 -11.89884 -11.71022 -11.53876 -11.48988 -11.43191 -11.19737 -11.10544 -10.96832 -10.86683 -10.84600 -10.79417 -10.36046 -10.02949 -9.81934 -9.65052 -9.17341 -8.92805 -8.84934 -8.73607 -6.87444 -5.70549 -2.99877 0.86990 1.14999 1.94768 2.61537 3.01069 3.47762 3.51492 3.53228 3.55726 4.09788 4.17265 4.26783 4.28950 4.39877 4.65296 4.69802 4.70348 4.73912 4.86709 4.99524 5.02918 5.09531 5.14487 5.16806 5.21598 5.26391 5.36476 5.40827 5.48336 5.50271 5.54373 5.58632 5.69428 5.71365 5.76494 5.80220 5.85787 5.91849 5.94225 6.13019 6.22495 6.25790 6.34157 6.48662 6.68709 6.72840 6.82447 6.88579 7.74967 8.46865 8.95151 9.58590 10.15052 10.51116 11.52352 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.001925 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.367979 B =14540.829081 C =14907.111181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.006 4.006 12 C -0.047 4.047 13 N -0.296 5.296 14 C 0.161 3.839 15 C -0.118 4.118 16 C -0.094 4.094 17 C -0.120 4.120 18 C -0.061 4.061 19 C -0.056 4.056 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.077 4.077 26 N -0.089 5.089 27 N -0.257 5.257 28 H 0.254 0.746 29 H 0.385 0.615 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.187 0.813 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.124 0.876 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 -32.471 -5.373 32.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.092 0.908 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.144 4.144 12 C -0.197 4.197 13 N -0.090 5.090 14 C 0.040 3.960 15 C -0.119 4.119 16 C -0.113 4.113 17 C -0.137 4.137 18 C -0.061 4.061 19 C -0.074 4.074 20 C -0.156 4.156 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.155 4.155 24 C -0.139 4.139 25 C -0.095 4.095 26 N -0.069 5.069 27 N -0.124 5.124 28 H 0.064 0.936 29 H 0.219 0.781 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.204 0.796 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.142 0.858 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.700 -32.894 -4.090 33.191 hybrid contribution 0.398 1.361 -1.098 1.793 sum -1.302 -31.534 -5.188 31.984 Atomic orbital electron populations 1.69699 1.05164 1.25470 1.57738 1.24766 0.95534 0.97725 1.03047 0.86081 0.78764 0.84009 0.77115 1.20477 1.21949 1.21884 1.19289 0.91129 0.83851 1.42618 0.90839 1.42328 1.05999 0.99289 1.89453 1.18932 0.90089 0.81438 0.99145 1.22443 1.02637 1.00839 0.88485 1.23406 0.99087 0.95225 1.01981 1.47315 1.30880 1.24004 1.06783 1.20834 0.97502 0.83562 0.94104 1.19659 0.98009 0.94703 0.99502 1.21029 0.96131 0.94533 0.99564 1.20902 0.99838 0.95387 0.97621 1.19936 0.94893 0.95575 0.95714 1.20835 0.97905 0.91117 0.97568 1.22516 0.94757 0.97374 1.00969 1.22519 1.00256 0.96908 0.96688 1.22385 0.96078 1.00447 0.97395 1.22254 0.97503 0.97522 0.98193 1.21060 0.97855 0.94654 1.00364 1.21061 0.98941 0.94877 0.94655 1.78237 1.19529 1.16467 0.92626 1.75100 1.06751 1.04268 1.26320 0.93606 0.78109 0.94552 0.94420 0.79554 0.87777 0.87051 0.85947 0.85925 0.90197 0.91051 0.91392 0.91455 0.91468 0.91673 0.91627 0.91622 0.91367 0.85843 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.13 13.06 55.49 0.72 -28.41 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 2.02 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -19.45 5.59 -61.09 -0.34 -19.79 16 10 C 0.23 5.06 6.82 -5.19 -0.04 5.03 16 11 C -0.01 -0.12 6.61 -82.78 -0.55 -0.67 16 12 C -0.05 -0.73 11.50 -17.04 -0.20 -0.93 16 13 N -0.30 -4.33 3.43 -62.45 -0.21 -4.55 16 14 C 0.16 1.55 6.58 -5.20 -0.03 1.52 16 15 C -0.12 -1.17 5.25 -104.62 -0.55 -1.71 16 16 C -0.09 -0.86 9.70 -39.59 -0.38 -1.24 16 17 C -0.12 -1.03 8.13 -39.58 -0.32 -1.35 16 18 C -0.06 -0.52 4.68 -104.62 -0.49 -1.01 16 19 C -0.06 -0.38 3.13 -90.65 -0.28 -0.67 16 20 C -0.12 -0.81 6.26 -25.08 -0.16 -0.97 16 21 C -0.13 -0.71 6.91 -24.74 -0.17 -0.88 16 22 C -0.13 -0.67 6.83 -25.07 -0.17 -0.84 16 23 C -0.12 -0.69 6.25 -25.61 -0.16 -0.85 16 24 C -0.12 -1.10 9.68 -39.59 -0.38 -1.49 16 25 C -0.08 -0.76 9.70 -39.58 -0.38 -1.15 16 26 N -0.09 -1.65 12.92 60.35 0.78 -0.87 16 27 N -0.26 -5.47 12.41 33.29 0.41 -5.06 16 28 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.39 11.13 7.66 -40.82 -0.31 10.81 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.19 2.24 8.06 -52.49 -0.42 1.81 16 33 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.11 0.73 8.01 -51.93 -0.42 0.32 16 35 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.12 0.89 7.73 -52.49 -0.41 0.48 16 37 H 0.08 0.52 7.91 -51.93 -0.41 0.10 16 38 H 0.07 0.55 6.86 -51.93 -0.36 0.19 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.43 7.31 -51.93 -0.38 0.05 16 46 H 0.12 0.92 7.96 -52.49 -0.42 0.50 16 47 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -35.09 388.79 -9.63 -44.72 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.31 Total: 5.02 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -4.52 Total: -14.72 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 1.36 Total: -58.67 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.09 -9.63 -44.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603243573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.927 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds