Wall clock time and date at job start Tue Mar 31 2020 14:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.50703 * 109.47207 * 125.29585 * 14 13 12 16 16 C 1.38234 * 119.99848 * 269.72568 * 15 14 13 17 17 C 1.38231 * 120.00136 * 179.74256 * 16 15 14 18 18 C 1.38237 * 119.99561 * 0.53229 * 17 16 15 19 19 C 1.50705 * 119.99855 * 179.76886 * 18 17 16 20 20 C 1.54261 * 110.03471 * 57.14322 * 19 18 17 21 21 C 1.54888 * 104.19778 * 217.10683 * 20 19 18 22 22 C 1.54891 * 102.74723 * 37.94189 * 21 20 19 23 23 C 1.53877 * 110.03052 * 299.97482 * 19 18 17 24 24 C 1.38233 * 120.00121 * 359.74123 * 18 17 16 25 25 C 1.38230 * 120.00278 * 359.97438 * 24 18 17 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 33 33 H 1.08997 * 109.47170 * 245.29472 * 14 13 12 34 34 H 1.08999 * 109.46977 * 5.29533 * 14 13 12 35 35 H 1.08013 * 119.99903 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.00175 * 180.29494 * 17 16 15 37 37 H 1.09000 * 110.01640 * 178.58781 * 19 18 17 38 38 H 1.09005 * 110.48748 * 335.78415 * 20 19 18 39 39 H 1.09001 * 110.48895 * 98.42532 * 20 19 18 40 40 H 1.09001 * 110.75835 * 279.63180 * 21 20 19 41 41 H 1.08993 * 110.75860 * 156.25493 * 21 20 19 42 42 H 1.09004 * 110.48626 * 203.38308 * 22 21 20 43 43 H 1.08996 * 110.48751 * 80.74083 * 22 21 20 44 44 H 1.08997 * 110.03304 * 238.57398 * 23 19 18 45 45 H 1.09001 * 110.03165 * 359.95470 * 23 19 18 46 46 H 1.07996 * 119.99912 * 179.97438 * 24 18 17 47 47 H 1.08002 * 120.00594 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9688 -7.3968 -1.3882 15 6 -0.6790 -8.7852 -0.8788 16 6 0.3775 -9.5068 -1.4021 17 6 0.6467 -10.7783 -0.9311 18 6 -0.1474 -11.3323 0.0554 19 6 0.1429 -12.7205 0.5652 20 6 1.5872 -12.7951 1.1020 21 6 2.0728 -14.2073 0.6908 22 6 1.4400 -14.3916 -0.7109 23 6 0.0493 -13.7356 -0.5874 24 6 -1.2073 -10.6129 0.5748 25 6 -1.4729 -9.3392 0.1080 26 7 -0.2825 -6.2992 0.6943 27 7 0.4867 -5.3442 1.0829 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6849 -3.7190 -0.8822 31 1 2.6842 -3.7101 0.8977 32 1 0.8827 -5.3105 -2.0986 33 1 -2.0376 -7.1973 -1.3110 34 1 -0.6593 -7.3202 -2.4305 35 1 0.9950 -9.0758 -2.1764 36 1 1.4751 -11.3402 -1.3367 37 1 -0.5630 -12.9839 1.3529 38 1 2.2070 -12.0283 0.6372 39 1 1.5970 -12.6892 2.1868 40 1 1.7006 -14.9610 1.3847 41 1 3.1606 -14.2395 0.6308 42 1 1.3424 -15.4508 -0.9491 43 1 2.0360 -13.8827 -1.4684 44 1 -0.7015 -14.4920 -0.3588 45 1 -0.2069 -13.2243 -1.5153 46 1 -1.8280 -11.0459 1.3452 47 1 -2.3013 -8.7772 0.5134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603243573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:07 Heat of formation + Delta-G solvation = 99.931875 kcal Electronic energy + Delta-G solvation = -26058.353151 eV Core-core repulsion = 22434.863553 eV Total energy + Delta-G solvation = -3623.489598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.17145 -40.88196 -38.64553 -36.89523 -35.74894 -33.69458 -32.84608 -31.92119 -31.53437 -29.71240 -29.57181 -27.58777 -26.89312 -24.76993 -23.87881 -23.34872 -22.58799 -21.60648 -21.46970 -20.48862 -19.34041 -18.24945 -17.84842 -17.15384 -16.78676 -16.61138 -16.03286 -15.84729 -15.83320 -15.56987 -15.34260 -15.06269 -14.39579 -14.31999 -14.30021 -14.15649 -13.87445 -13.72358 -13.32710 -13.09908 -12.89078 -12.80130 -12.47847 -12.28690 -12.10379 -12.02801 -11.97902 -11.93162 -11.87025 -11.75444 -11.68995 -11.47398 -11.37088 -10.98942 -10.95625 -10.15815 -9.86629 -9.60069 -9.01336 -7.92895 -5.23322 0.13917 0.45680 0.70221 1.47847 1.51687 1.54114 1.62499 1.63658 2.60072 2.80221 3.33898 3.39978 3.53278 3.64633 3.69471 3.76256 3.80926 4.01747 4.05349 4.12234 4.22462 4.24017 4.28950 4.31678 4.48418 4.52381 4.55844 4.62372 4.66358 4.68421 4.81785 4.82871 4.88487 4.95764 4.99714 5.07445 5.11119 5.18044 5.20229 5.24776 5.29629 5.34572 5.45457 5.50235 5.51660 5.55110 5.69397 5.72436 6.02013 6.26986 7.33576 7.58417 8.05112 8.31309 9.31312 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.001925 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.367979 B =14540.829081 C =14907.111181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.297 1.297 7 C -0.242 4.242 8 H 0.085 0.915 9 N -0.739 5.739 10 C 0.236 3.764 11 C -0.041 4.041 12 C -0.021 4.021 13 N -0.279 5.279 14 C 0.150 3.850 15 C -0.130 4.130 16 C -0.099 4.099 17 C -0.126 4.126 18 C -0.063 4.063 19 C -0.056 4.056 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.114 4.114 24 C -0.134 4.134 25 C -0.092 4.092 26 N -0.106 5.106 27 N -0.305 5.305 28 H 0.250 0.750 29 H 0.370 0.630 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.230 0.770 33 H 0.117 0.883 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.134 0.866 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 -33.849 -7.162 34.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.218 1.218 6 H -0.225 1.225 7 C -0.374 4.374 8 H 0.103 0.897 9 N -0.382 5.382 10 C 0.109 3.891 11 C -0.179 4.179 12 C -0.173 4.173 13 N -0.073 5.073 14 C 0.032 3.968 15 C -0.131 4.131 16 C -0.117 4.117 17 C -0.144 4.144 18 C -0.063 4.063 19 C -0.074 4.074 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.152 4.152 24 C -0.152 4.152 25 C -0.111 4.111 26 N -0.085 5.085 27 N -0.172 5.172 28 H 0.059 0.941 29 H 0.202 0.798 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.246 0.754 33 H 0.135 0.865 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.152 0.848 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.695 -34.333 -5.877 34.839 hybrid contribution 0.071 1.605 -0.561 1.702 sum -0.624 -32.727 -6.437 33.360 Atomic orbital electron populations 1.69871 1.06904 1.25985 1.59664 1.25666 0.96423 1.01408 1.03662 0.84970 0.78353 0.79266 0.76521 1.18531 1.21780 1.22477 1.19754 0.91822 0.84806 1.40987 0.89731 1.42536 1.05480 1.00713 1.89439 1.18951 0.90385 0.80333 0.99471 1.22285 1.04100 1.01702 0.89827 1.23885 0.97187 0.93558 1.02689 1.47718 1.29777 1.23802 1.06000 1.21374 0.97917 0.82278 0.95221 1.19717 0.98565 0.94886 0.99941 1.21292 0.95943 0.94673 0.99837 1.21126 1.00143 0.95526 0.97571 1.20167 0.94464 0.96230 0.95422 1.20870 0.97938 0.90533 0.98058 1.22512 0.94655 0.98011 1.00621 1.22513 1.00515 0.96088 0.96987 1.22388 0.95583 1.00996 0.97161 1.22229 0.98126 0.97329 0.97470 1.21275 0.98439 0.94666 1.00828 1.21214 0.99316 0.95406 0.95118 1.78134 1.19596 1.16212 0.94594 1.75027 1.08283 1.05777 1.28104 0.94100 0.79846 0.91894 0.95648 0.75405 0.86490 0.83115 0.84182 0.84665 0.89925 0.91988 0.91835 0.90935 0.91122 0.90728 0.91551 0.90940 0.91763 0.84845 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.79 13.06 21.65 0.28 -61.51 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 3 Si 0.98 46.98 29.55 68.60 2.03 49.00 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 7 C -0.24 -13.87 9.99 84.03 0.84 -13.03 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 N -0.74 -39.81 5.59 -347.18 -1.94 -41.75 16 10 C 0.24 10.19 6.82 85.63 0.58 10.77 16 11 C -0.04 -1.58 6.61 41.60 0.28 -1.31 16 12 C -0.02 -0.62 11.50 83.49 0.96 0.34 16 13 N -0.28 -7.67 3.43 -351.48 -1.21 -8.88 16 14 C 0.15 2.52 6.58 85.64 0.56 3.08 16 15 C -0.13 -2.37 5.25 -19.86 -0.10 -2.47 16 16 C -0.10 -1.61 9.70 22.27 0.22 -1.39 16 17 C -0.13 -1.98 8.13 22.27 0.18 -1.80 16 18 C -0.06 -1.01 4.68 -19.86 -0.09 -1.10 16 19 C -0.06 -0.70 3.13 -10.82 -0.03 -0.74 16 20 C -0.12 -1.54 6.26 31.67 0.20 -1.34 16 21 C -0.12 -1.20 6.91 31.89 0.22 -0.98 16 22 C -0.12 -1.09 6.83 31.67 0.22 -0.88 16 23 C -0.11 -1.16 6.25 31.32 0.20 -0.97 16 24 C -0.13 -2.38 9.68 22.27 0.22 -2.16 16 25 C -0.09 -1.78 9.70 22.27 0.22 -1.57 16 26 N -0.11 -3.89 12.92 37.02 0.48 -3.42 16 27 N -0.31 -13.18 12.41 -48.60 -0.60 -13.79 16 28 H 0.25 15.31 8.31 -92.71 -0.77 14.53 16 29 H 0.37 21.83 7.66 -92.71 -0.71 21.12 16 30 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.23 4.47 8.06 -2.91 -0.02 4.44 16 33 H 0.12 1.71 8.09 -2.39 -0.02 1.69 16 34 H 0.15 1.34 8.01 -2.39 -0.02 1.32 16 35 H 0.14 1.70 8.06 -2.90 -0.02 1.68 16 36 H 0.14 1.72 7.73 -2.91 -0.02 1.70 16 37 H 0.08 0.99 7.91 -2.39 -0.02 0.97 16 38 H 0.06 0.90 6.86 -2.38 -0.02 0.89 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 43 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.06 0.71 7.31 -2.39 -0.02 0.70 16 46 H 0.13 1.96 7.96 -2.91 -0.02 1.93 16 47 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -77.07 388.79 4.41 -72.66 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.25 Total: 27.46 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 5.12 Total: -19.78 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -2.99 Total: -129.34 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -77.07 4.41 -72.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603243573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.588 kcal (2) G-P(sol) polarization free energy of solvation -77.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds