Wall clock time and date at job start Tue Mar 31 2020 14:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46505 * 119.99747 * 2 1 4 4 C 1.50701 * 109.47121 * 270.00127 * 3 2 1 5 5 H 1.07998 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99528 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99718 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00279 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.46938 * 89.99953 * 8 6 4 10 10 H 1.48502 * 109.46908 * 209.99988 * 8 6 4 11 11 H 1.48501 * 109.46969 * 330.00049 * 8 6 4 12 12 C 1.34777 * 120.00106 * 180.02562 * 2 1 3 13 13 O 1.21580 * 119.99654 * 184.86330 * 12 2 1 14 14 C 1.47654 * 120.00110 * 4.85087 * 12 2 1 15 15 C 1.40207 * 119.96876 * 140.47847 * 14 12 2 16 16 C 1.36308 * 120.65820 * 179.88187 * 15 14 12 17 17 C 1.39371 * 120.24897 * 0.09126 * 16 15 14 18 18 N 1.37362 * 133.23726 * 179.97438 * 17 16 15 19 19 H 0.96998 * 124.93249 * 0.06227 * 18 17 16 20 20 C 1.37085 * 110.13678 * 180.02562 * 18 17 16 21 21 C 1.34296 * 109.55211 * 0.21393 * 20 18 17 22 22 C 1.40898 * 119.64486 * 0.09093 * 17 16 15 23 23 C 1.39140 * 119.97091 * 320.50960 * 14 12 2 24 24 C 1.50654 * 126.08205 * 179.43813 * 21 20 18 25 25 C 1.53078 * 109.41939 * 27.87048 * 24 21 20 26 26 C 1.52674 * 109.43763 * 270.99689 * 25 24 21 27 27 C 1.52621 * 110.51838 * 61.31957 * 26 25 24 28 28 C 1.51066 * 125.37696 * 180.86581 * 20 18 17 29 29 H 1.09000 * 109.46781 * 265.83656 * 1 2 3 30 30 H 1.09001 * 109.46846 * 25.83663 * 1 2 3 31 31 H 1.08997 * 109.47046 * 145.83940 * 1 2 3 32 32 H 1.08998 * 109.47199 * 30.00303 * 3 2 1 33 33 H 1.09002 * 109.46615 * 150.00472 * 3 2 1 34 34 H 0.97000 * 119.99988 * 180.02562 * 7 6 4 35 35 H 1.08005 * 119.66843 * 359.85624 * 15 14 12 36 36 H 1.07997 * 119.87647 * 180.02562 * 16 15 14 37 37 H 1.07996 * 120.29406 * 359.97438 * 23 14 12 38 38 H 1.08992 * 109.48068 * 147.85338 * 24 21 20 39 39 H 1.08998 * 109.48255 * 267.88426 * 24 21 20 40 40 H 1.09007 * 109.48056 * 30.97280 * 25 24 21 41 41 H 1.08997 * 109.48080 * 151.00137 * 25 24 21 42 42 H 1.08996 * 109.25474 * 301.05518 * 26 25 24 43 43 H 1.08994 * 109.26373 * 181.58996 * 26 25 24 44 44 H 1.08998 * 109.42977 * 273.51538 * 27 26 25 45 45 H 1.09004 * 109.42602 * 153.66212 * 27 26 25 46 46 H 1.08991 * 109.46479 * 346.27887 * 28 20 18 47 47 H 1.08996 * 109.46063 * 106.25907 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8776 -1.6727 7 7 3.3456 3.2576 -2.9125 8 14 3.7350 3.9281 -0.2528 9 1 5.1083 3.5059 0.1226 10 1 3.7508 5.3550 -0.6640 11 1 2.8293 3.7586 0.9118 12 6 2.1390 -1.1672 -0.0005 13 8 3.3515 -1.1690 0.0887 14 6 1.4047 -2.4436 -0.1092 15 6 1.9230 -3.4853 -0.8915 16 6 1.2581 -4.6703 -0.9998 17 6 0.0492 -4.8605 -0.3329 18 7 -0.8261 -5.9162 -0.2543 19 1 -0.7092 -6.7691 -0.7013 20 6 -1.8883 -5.5898 0.5484 21 6 -1.7396 -4.3347 1.0023 22 6 -0.4842 -3.8201 0.4534 23 6 0.1988 -2.6113 0.5643 24 6 -2.6963 -3.5977 1.9031 25 6 -3.4564 -4.6043 2.7705 26 6 -4.7193 -5.0532 2.0395 27 6 -4.3606 -5.7429 0.7261 28 6 -3.0428 -6.5038 0.8860 29 1 -0.3633 -0.0746 1.0250 30 1 -0.3633 0.9250 -0.4479 31 1 -0.3633 -0.8503 -0.5770 32 1 1.6085 2.0284 0.5139 33 1 3.1500 1.1384 0.5138 34 1 3.8230 4.0831 -3.0898 35 1 2.8582 -3.3473 -1.4139 36 1 1.6691 -5.4644 -1.6055 37 1 -0.2040 -1.8114 1.1678 38 1 -2.1391 -2.9140 2.5434 39 1 -3.4043 -3.0327 1.2969 40 1 -2.8220 -5.4692 2.9643 41 1 -3.7306 -4.1355 3.7156 42 1 -5.3421 -4.1834 1.8307 43 1 -5.2727 -5.7480 2.6712 44 1 -4.2544 -4.9945 -0.0592 45 1 -5.1523 -6.4416 0.4555 46 1 -3.0351 -7.3619 0.2141 47 1 -2.9446 -6.8477 1.9156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604529982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:15 Heat of formation + Delta-G solvation = 19.548239 kcal Electronic energy + Delta-G solvation = -27472.526577 eV Core-core repulsion = 23813.258532 eV Total energy + Delta-G solvation = -3659.268045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64572 -39.31492 -37.81465 -36.03243 -34.93074 -32.84101 -32.54015 -31.36661 -29.73081 -29.50925 -27.98566 -26.20138 -25.56385 -24.54182 -23.39096 -22.12145 -21.25039 -19.89837 -19.41254 -18.65813 -17.68730 -16.88415 -16.83899 -16.18227 -15.68350 -15.29976 -14.91009 -14.76180 -14.43546 -14.12188 -13.87243 -13.61772 -13.47995 -13.43122 -13.28801 -13.19520 -12.60064 -12.42256 -12.32875 -12.16859 -11.94415 -11.77006 -11.52869 -11.36847 -11.26990 -11.13154 -10.96316 -10.82586 -10.70459 -10.53649 -10.46789 -10.11054 -9.51829 -9.47414 -9.03784 -8.55102 -8.08909 -7.63414 -7.58228 -6.04891 -4.03579 1.11290 1.45492 2.56139 2.93844 3.32900 3.38803 3.40921 3.41871 3.85577 4.17570 4.32589 4.43523 4.48165 4.52260 4.70252 4.74044 4.78750 4.98516 5.09385 5.11879 5.13175 5.20495 5.29006 5.30578 5.45064 5.48328 5.58133 5.65799 5.71246 5.73151 5.77810 5.81248 5.86381 5.92171 5.96286 5.99091 6.12278 6.18374 6.25745 6.42766 6.60179 6.67640 6.76549 6.79196 7.00549 7.13194 7.39985 7.42498 7.64941 8.29555 8.51309 8.97075 9.03606 9.55446 11.08535 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002857 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.394483 B = 9798.071525 C =10564.538230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.591 5.591 3 C 0.214 3.786 4 C -0.529 4.529 5 H 0.075 0.925 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.265 1.265 12 C 0.554 3.446 13 O -0.540 6.540 14 C -0.142 4.142 15 C -0.045 4.045 16 C -0.140 4.140 17 C 0.113 3.887 18 N -0.592 5.592 19 H 0.411 0.589 20 C 0.071 3.929 21 C -0.154 4.154 22 C -0.112 4.112 23 C -0.043 4.043 24 C -0.046 4.046 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.115 4.115 28 C -0.056 4.056 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.020 -21.380 9.575 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.322 5.322 3 C 0.094 3.906 4 C -0.568 4.568 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.342 3.658 13 O -0.418 6.418 14 C -0.146 4.146 15 C -0.065 4.065 16 C -0.161 4.161 17 C 0.005 3.995 18 N -0.195 5.195 19 H 0.248 0.752 20 C -0.036 4.036 21 C -0.161 4.161 22 C -0.117 4.117 23 C -0.062 4.062 24 C -0.084 4.084 25 C -0.161 4.161 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.094 4.094 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.318 -21.303 9.475 29.043 hybrid contribution 0.501 0.214 0.130 0.560 sum -16.817 -21.088 9.604 28.632 Atomic orbital electron populations 1.21980 0.81103 1.03491 0.99945 1.47735 1.06276 1.06920 1.71273 1.19703 0.92616 0.79874 0.98408 1.21355 1.36904 1.07203 0.91292 0.90699 1.24857 0.95240 0.97330 0.95595 1.69900 1.41523 1.23586 1.18664 0.86842 0.80186 0.79677 0.82958 1.19868 1.21099 1.19002 1.18117 0.87054 0.83307 0.77342 1.90739 1.13636 1.87173 1.50292 1.19837 0.96328 0.95769 1.02670 1.20573 0.98918 0.90803 0.96175 1.19625 0.93948 0.98843 1.03701 1.18295 0.92946 0.88158 1.00083 1.41634 1.19115 1.14523 1.44247 0.75231 1.20186 0.90738 0.95748 0.96918 1.19966 0.96641 0.94132 1.05316 1.18880 0.96329 0.94237 1.02206 1.21021 0.92345 0.95569 0.97246 1.19954 0.95777 0.96759 0.95886 1.21682 0.96509 0.99574 0.98331 1.21529 0.97662 1.00391 0.96197 1.21499 0.95494 0.99604 0.98643 1.20351 0.90731 0.95939 1.02339 0.93538 0.90615 0.91401 0.95095 0.94311 0.92587 0.84795 0.86023 0.84744 0.91152 0.91024 0.91268 0.91705 0.91661 0.92164 0.91187 0.91448 0.91357 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 8.88 59.85 0.53 1.84 16 2 N -0.59 -12.95 2.86 -184.14 -0.53 -13.48 16 3 C 0.21 5.43 4.25 -5.19 -0.02 5.41 16 4 C -0.53 -15.58 9.94 -34.44 -0.34 -15.92 16 5 H 0.07 2.42 8.06 -52.49 -0.42 1.99 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 7 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 8 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 12 C 0.55 12.36 7.33 -12.42 -0.09 12.26 16 13 O -0.54 -14.14 16.46 5.29 0.09 -14.05 16 14 C -0.14 -2.54 5.23 -104.98 -0.55 -3.09 16 15 C -0.04 -0.73 9.54 -39.54 -0.38 -1.10 16 16 C -0.14 -1.86 10.00 -39.86 -0.40 -2.26 16 17 C 0.11 1.46 7.27 -83.96 -0.61 0.85 16 18 N -0.59 -5.78 6.05 -6.73 -0.04 -5.82 16 19 H 0.41 2.77 8.96 -40.82 -0.37 2.40 16 20 C 0.07 0.67 6.29 -81.45 -0.51 0.16 16 21 C -0.15 -1.71 5.80 -102.77 -0.60 -2.31 16 22 C -0.11 -1.54 6.35 -105.24 -0.67 -2.21 16 23 C -0.04 -0.65 7.60 -38.86 -0.30 -0.94 16 24 C -0.05 -0.41 5.80 -27.86 -0.16 -0.57 16 25 C -0.12 -0.84 5.55 -26.86 -0.15 -0.99 16 26 C -0.12 -0.68 5.65 -27.09 -0.15 -0.83 16 27 C -0.11 -0.67 5.63 -26.92 -0.15 -0.82 16 28 C -0.06 -0.35 5.52 -27.70 -0.15 -0.50 16 29 H 0.05 0.63 6.91 -51.93 -0.36 0.27 16 30 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 31 H 0.07 1.05 5.80 -51.93 -0.30 0.75 16 32 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.04 1.04 6.78 -51.93 -0.35 0.69 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.13 2.21 8.05 -52.48 -0.42 1.79 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.13 1.84 5.33 -52.49 -0.28 1.56 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.61 7.81 -51.93 -0.41 0.21 16 40 H 0.07 0.50 5.63 -51.92 -0.29 0.20 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.51 7.80 -51.93 -0.40 0.11 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.50 6.29 -51.93 -0.33 0.17 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -35.95 367.42 -10.48 -46.43 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.84 Total: 0.47 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -4.80 Total: -9.00 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.21 Total: -46.64 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.95 -10.48 -46.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604529982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.976 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds