Wall clock time and date at job start Tue Mar 31 2020 14:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46505 * 119.99747 * 2 1 4 4 C 1.50701 * 109.47121 * 270.00127 * 3 2 1 5 5 H 1.07998 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99528 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99718 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00279 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.46938 * 89.99953 * 8 6 4 10 10 H 1.48502 * 109.46908 * 209.99988 * 8 6 4 11 11 H 1.48501 * 109.46969 * 330.00049 * 8 6 4 12 12 C 1.34777 * 120.00106 * 180.02562 * 2 1 3 13 13 O 1.21580 * 119.99654 * 184.86330 * 12 2 1 14 14 C 1.47654 * 120.00110 * 4.85087 * 12 2 1 15 15 C 1.40207 * 119.96876 * 140.47847 * 14 12 2 16 16 C 1.36308 * 120.65820 * 179.88187 * 15 14 12 17 17 C 1.39371 * 120.24897 * 0.09126 * 16 15 14 18 18 N 1.37362 * 133.23726 * 179.97438 * 17 16 15 19 19 H 0.96998 * 124.93249 * 0.06227 * 18 17 16 20 20 C 1.37085 * 110.13678 * 180.02562 * 18 17 16 21 21 C 1.34296 * 109.55211 * 0.21393 * 20 18 17 22 22 C 1.40898 * 119.64486 * 0.09093 * 17 16 15 23 23 C 1.39140 * 119.97091 * 320.50960 * 14 12 2 24 24 C 1.50654 * 126.08205 * 179.43813 * 21 20 18 25 25 C 1.53078 * 109.41939 * 27.87048 * 24 21 20 26 26 C 1.52674 * 109.43763 * 270.99689 * 25 24 21 27 27 C 1.52621 * 110.51838 * 61.31957 * 26 25 24 28 28 C 1.51066 * 125.37696 * 180.86581 * 20 18 17 29 29 H 1.09000 * 109.46781 * 265.83656 * 1 2 3 30 30 H 1.09001 * 109.46846 * 25.83663 * 1 2 3 31 31 H 1.08997 * 109.47046 * 145.83940 * 1 2 3 32 32 H 1.08998 * 109.47199 * 30.00303 * 3 2 1 33 33 H 1.09002 * 109.46615 * 150.00472 * 3 2 1 34 34 H 0.97000 * 119.99988 * 180.02562 * 7 6 4 35 35 H 1.08005 * 119.66843 * 359.85624 * 15 14 12 36 36 H 1.07997 * 119.87647 * 180.02562 * 16 15 14 37 37 H 1.07996 * 120.29406 * 359.97438 * 23 14 12 38 38 H 1.08992 * 109.48068 * 147.85338 * 24 21 20 39 39 H 1.08998 * 109.48255 * 267.88426 * 24 21 20 40 40 H 1.09007 * 109.48056 * 30.97280 * 25 24 21 41 41 H 1.08997 * 109.48080 * 151.00137 * 25 24 21 42 42 H 1.08996 * 109.25474 * 301.05518 * 26 25 24 43 43 H 1.08994 * 109.26373 * 181.58996 * 26 25 24 44 44 H 1.08998 * 109.42977 * 273.51538 * 27 26 25 45 45 H 1.09004 * 109.42602 * 153.66212 * 27 26 25 46 46 H 1.08991 * 109.46479 * 346.27887 * 28 20 18 47 47 H 1.08996 * 109.46063 * 106.25907 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8776 -1.6727 7 7 3.3456 3.2576 -2.9125 8 14 3.7350 3.9281 -0.2528 9 1 5.1083 3.5059 0.1226 10 1 3.7508 5.3550 -0.6640 11 1 2.8293 3.7586 0.9118 12 6 2.1390 -1.1672 -0.0005 13 8 3.3515 -1.1690 0.0887 14 6 1.4047 -2.4436 -0.1092 15 6 1.9230 -3.4853 -0.8915 16 6 1.2581 -4.6703 -0.9998 17 6 0.0492 -4.8605 -0.3329 18 7 -0.8261 -5.9162 -0.2543 19 1 -0.7092 -6.7691 -0.7013 20 6 -1.8883 -5.5898 0.5484 21 6 -1.7396 -4.3347 1.0023 22 6 -0.4842 -3.8201 0.4534 23 6 0.1988 -2.6113 0.5643 24 6 -2.6963 -3.5977 1.9031 25 6 -3.4564 -4.6043 2.7705 26 6 -4.7193 -5.0532 2.0395 27 6 -4.3606 -5.7429 0.7261 28 6 -3.0428 -6.5038 0.8860 29 1 -0.3633 -0.0746 1.0250 30 1 -0.3633 0.9250 -0.4479 31 1 -0.3633 -0.8503 -0.5770 32 1 1.6085 2.0284 0.5139 33 1 3.1500 1.1384 0.5138 34 1 3.8230 4.0831 -3.0898 35 1 2.8582 -3.3473 -1.4139 36 1 1.6691 -5.4644 -1.6055 37 1 -0.2040 -1.8114 1.1678 38 1 -2.1391 -2.9140 2.5434 39 1 -3.4043 -3.0327 1.2969 40 1 -2.8220 -5.4692 2.9643 41 1 -3.7306 -4.1355 3.7156 42 1 -5.3421 -4.1834 1.8307 43 1 -5.2727 -5.7480 2.6712 44 1 -4.2544 -4.9945 -0.0592 45 1 -5.1523 -6.4416 0.4555 46 1 -3.0351 -7.3619 0.2141 47 1 -2.9446 -6.8477 1.9156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604529982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:14 Heat of formation + Delta-G solvation = -2.875498 kcal Electronic energy + Delta-G solvation = -27473.498943 eV Core-core repulsion = 23813.258532 eV Total energy + Delta-G solvation = -3660.240411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.57412 -40.86634 -38.65961 -37.05511 -36.74131 -34.73884 -33.60670 -32.37390 -30.96975 -30.43629 -29.62070 -27.66985 -26.42243 -25.34412 -24.90562 -23.43128 -22.50096 -20.70573 -20.33365 -19.81502 -19.15577 -18.64993 -18.16178 -17.39381 -16.99485 -16.38797 -16.31830 -15.91309 -15.68341 -15.37224 -14.99287 -14.91239 -14.67789 -14.43653 -14.13056 -14.05469 -14.00675 -13.77869 -13.65858 -13.53969 -13.17786 -13.13659 -12.88846 -12.54230 -12.49971 -12.33125 -12.03318 -11.92743 -11.86232 -11.75894 -11.50373 -11.35098 -11.14910 -10.84815 -10.79680 -10.48324 -9.49297 -9.13030 -8.51368 -8.35130 -6.41083 0.01013 0.28271 1.32729 1.37558 1.46195 1.68680 1.83787 2.10312 2.30241 2.31685 2.88663 2.98899 3.50086 3.72291 3.75792 3.95184 4.03451 4.11813 4.16488 4.23042 4.33224 4.33773 4.42760 4.47850 4.57901 4.61440 4.63695 4.73620 4.83291 4.86326 4.87162 4.92008 4.95474 5.02037 5.08543 5.16539 5.23468 5.35305 5.38460 5.42270 5.42751 5.45991 5.50673 5.58892 5.61462 5.65365 5.87479 6.11363 6.22496 6.59662 6.61125 6.67024 7.17725 7.33546 8.82061 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002857 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.394483 B = 9798.071525 C =10564.538230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.599 5.599 3 C 0.223 3.777 4 C -0.541 4.541 5 H 0.026 0.974 6 C 0.011 3.989 7 N -0.945 5.945 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.236 1.236 12 C 0.546 3.454 13 O -0.595 6.595 14 C -0.169 4.169 15 C -0.072 4.072 16 C -0.125 4.125 17 C 0.107 3.893 18 N -0.578 5.578 19 H 0.428 0.572 20 C 0.087 3.913 21 C -0.173 4.173 22 C -0.127 4.127 23 C -0.035 4.035 24 C -0.047 4.047 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.113 4.113 28 C -0.054 4.054 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.270 0.730 35 H 0.116 0.884 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.082 -23.420 11.800 33.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.329 5.329 3 C 0.101 3.899 4 C -0.579 4.579 5 H 0.044 0.956 6 C -0.187 4.187 7 N -0.585 5.585 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.159 1.159 12 C 0.337 3.663 13 O -0.478 6.478 14 C -0.173 4.173 15 C -0.092 4.092 16 C -0.145 4.145 17 C -0.002 4.002 18 N -0.182 5.182 19 H 0.268 0.732 20 C -0.020 4.020 21 C -0.179 4.179 22 C -0.132 4.132 23 C -0.053 4.053 24 C -0.084 4.084 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.151 4.151 28 C -0.092 4.092 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.451 -23.383 11.697 33.194 hybrid contribution 1.315 0.659 -0.644 1.606 sum -19.136 -22.724 11.053 31.698 Atomic orbital electron populations 1.22245 0.77978 1.03810 1.02580 1.47838 1.08322 1.05818 1.70932 1.19417 0.92909 0.82056 0.95560 1.21550 1.37142 1.06967 0.92244 0.95571 1.25878 0.95109 0.98840 0.98828 1.70051 1.42561 1.24532 1.21358 0.85678 0.79606 0.77707 0.79749 1.20160 1.19700 1.15908 1.18876 0.86752 0.84779 0.75920 1.90677 1.16095 1.88141 1.52864 1.19527 0.97866 0.94161 1.05787 1.20514 0.99216 0.92083 0.97437 1.19759 0.93667 0.98114 1.03008 1.18365 0.93080 0.89099 0.99682 1.41702 1.18290 1.14485 1.43683 0.73181 1.20788 0.90749 0.95644 0.94860 1.20257 0.96224 0.95034 1.06427 1.19202 0.97519 0.93910 1.02565 1.21012 0.91164 0.96650 0.96524 1.20009 0.95510 0.97150 0.95778 1.21661 0.96746 0.98954 0.98359 1.21527 0.97094 1.00760 0.96224 1.21496 0.95787 0.99573 0.98220 1.20515 0.89201 0.95844 1.03635 0.89632 0.90897 0.90425 0.92571 0.96063 0.92147 0.86573 0.83082 0.83673 0.91751 0.90877 0.91347 0.90969 0.91707 0.90662 0.92789 0.89590 0.89200 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.50 8.88 127.77 1.13 3.64 16 2 N -0.60 -27.11 2.86 -854.76 -2.44 -29.55 16 3 C 0.22 11.51 4.25 85.63 0.36 11.88 16 4 C -0.54 -33.31 9.94 25.60 0.25 -33.06 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 6 C 0.01 0.70 5.47 84.66 0.46 1.16 16 7 N -0.95 -61.29 13.96 21.45 0.30 -61.00 16 8 Si 0.95 45.64 27.47 68.60 1.88 47.52 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.24 -10.15 6.54 99.48 0.65 -9.49 16 12 C 0.55 25.77 7.33 86.73 0.64 26.41 16 13 O -0.60 -33.40 16.46 -3.97 -0.07 -33.46 16 14 C -0.17 -6.33 5.23 -20.10 -0.11 -6.43 16 15 C -0.07 -2.47 9.54 22.30 0.21 -2.26 16 16 C -0.13 -3.25 10.00 22.09 0.22 -3.03 16 17 C 0.11 2.58 7.27 39.20 0.29 2.87 16 18 N -0.58 -9.45 6.05 -175.21 -1.06 -10.51 16 19 H 0.43 4.12 8.96 -92.71 -0.83 3.29 16 20 C 0.09 1.36 6.29 40.95 0.26 1.61 16 21 C -0.17 -3.45 5.80 -18.66 -0.11 -3.56 16 22 C -0.13 -3.33 6.35 -20.26 -0.13 -3.46 16 23 C -0.03 -1.04 7.60 22.74 0.17 -0.87 16 24 C -0.05 -0.73 5.80 29.86 0.17 -0.55 16 25 C -0.12 -1.27 5.55 30.51 0.17 -1.10 16 26 C -0.12 -0.91 5.65 30.36 0.17 -0.74 16 27 C -0.11 -0.89 5.63 30.47 0.17 -0.72 16 28 C -0.05 -0.44 5.52 29.97 0.17 -0.27 16 29 H 0.09 2.17 6.91 -2.39 -0.02 2.15 16 30 H 0.07 2.44 8.04 -2.39 -0.02 2.42 16 31 H 0.08 2.42 5.80 -2.39 -0.01 2.40 16 32 H 0.06 2.61 7.13 -2.39 -0.02 2.59 16 33 H 0.02 1.17 6.78 -2.39 -0.02 1.16 16 34 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 35 H 0.12 4.25 8.05 -2.91 -0.02 4.22 16 36 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.15 3.85 5.33 -2.91 -0.02 3.84 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.10 7.81 -2.39 -0.02 1.08 16 40 H 0.07 0.74 5.63 -2.38 -0.01 0.73 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.06 0.53 8.08 -2.39 -0.02 0.51 16 43 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.05 0.62 7.80 -2.39 -0.02 0.60 16 45 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 46 H 0.09 0.40 8.14 -2.39 -0.02 0.39 16 47 H 0.10 0.66 6.29 -2.39 -0.02 0.65 16 Total: -1.00 -84.03 367.42 3.24 -80.79 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.11 Total: 14.69 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 4.51 Total: -8.49 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -3.20 Total: -101.05 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.07 Total: -33.46 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -84.03 3.24 -80.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604529982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.912 kcal (2) G-P(sol) polarization free energy of solvation -84.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds