Wall clock time and date at job start Tue Mar 31 2020 14:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99583 * 2 1 4 4 H 1.48500 * 109.46914 * 269.99539 * 3 2 1 5 5 H 1.48496 * 109.47201 * 29.99571 * 3 2 1 6 6 H 1.48505 * 109.47197 * 149.99767 * 3 2 1 7 7 C 1.38804 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99624 * 164.05295 * 7 2 1 9 9 N 1.36933 * 120.00614 * 344.05546 * 7 2 1 10 10 C 1.46935 * 120.62815 * 331.06870 * 9 7 2 11 11 C 1.53187 * 108.89351 * 233.51852 * 10 9 7 12 12 C 1.53081 * 109.29132 * 305.57175 * 11 10 9 13 13 N 1.46899 * 109.45143 * 181.24458 * 12 11 10 14 14 C 1.46901 * 111.00000 * 84.79074 * 13 12 11 15 15 C 1.50704 * 109.47237 * 182.76832 * 14 13 12 16 16 C 1.35080 * 126.07380 * 101.73257 * 15 14 13 17 17 N 1.35039 * 107.98184 * 179.87233 * 16 15 14 18 18 H 0.96997 * 125.93716 * 180.15253 * 17 16 15 19 19 N 1.40078 * 108.13574 * 0.39497 * 17 16 15 20 20 C 1.31620 * 108.10682 * 359.75739 * 19 17 16 21 21 C 1.48421 * 126.03834 * 179.97438 * 20 19 17 22 22 C 1.39323 * 120.11784 * 136.61053 * 21 20 19 23 23 C 1.38028 * 119.87714 * 179.75168 * 22 21 20 24 24 C 1.38321 * 120.11945 * 0.52331 * 23 22 21 25 25 C 1.38322 * 120.23809 * 359.74723 * 24 23 22 26 26 C 1.38023 * 120.12219 * 359.97438 * 25 24 23 27 27 C 1.53043 * 109.65419 * 61.16039 * 12 11 10 28 28 C 1.46923 * 120.63481 * 151.04631 * 9 7 2 29 29 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58397 * 353.37239 * 10 9 7 31 31 H 1.08995 * 109.58675 * 113.65121 * 10 9 7 32 32 H 1.08990 * 109.50357 * 65.38453 * 11 10 9 33 33 H 1.09002 * 109.49728 * 185.48465 * 11 10 9 34 34 H 1.08996 * 109.33724 * 301.13718 * 12 11 10 35 35 H 1.00904 * 111.00166 * 320.83472 * 13 12 11 36 36 H 1.08999 * 109.47041 * 302.77293 * 14 13 12 37 37 H 1.08997 * 109.46859 * 62.77242 * 14 13 12 38 38 H 1.08004 * 126.01143 * 359.97438 * 16 15 14 39 39 H 1.08001 * 120.06442 * 0.02562 * 22 21 20 40 40 H 1.07999 * 119.93946 * 180.29606 * 23 22 21 41 41 H 1.07992 * 119.88212 * 179.77080 * 24 23 22 42 42 H 1.08002 * 119.93883 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.06010 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.49524 * 178.74613 * 27 12 11 45 45 H 1.08997 * 109.50348 * 58.65064 * 27 12 11 46 46 H 1.09009 * 109.58563 * 246.20197 * 28 9 7 47 47 H 1.08992 * 109.58954 * 6.48303 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0592 -1.2201 -0.2565 9 7 1.3653 -2.3651 0.3268 10 6 0.2182 -2.3527 1.2450 11 6 0.4791 -3.3501 2.3781 12 6 0.7945 -4.7235 1.7802 13 7 1.0160 -5.6898 2.8642 14 6 -0.2564 -6.2521 3.3364 15 6 0.0043 -7.1853 4.4907 16 6 -0.1824 -6.9040 5.7986 17 7 0.1615 -7.9970 6.5132 18 1 0.1254 -8.0803 7.4790 19 7 0.5847 -8.9879 5.6181 20 6 0.4918 -8.5034 4.3978 21 6 0.8398 -9.2195 3.1452 22 6 0.0020 -9.1342 2.0353 23 6 0.3331 -9.7980 0.8713 24 6 1.4887 -10.5555 0.8089 25 6 2.3212 -10.6481 1.9097 26 6 2.0027 -9.9838 3.0769 27 6 2.0531 -4.6313 0.9144 28 6 1.8066 -3.6489 -0.2349 29 1 -0.4850 0.8400 -0.0004 30 1 0.0933 -1.3526 1.6602 31 1 -0.6845 -2.6398 0.7059 32 1 1.3268 -3.0111 2.9732 33 1 -0.4054 -3.4209 3.0112 34 1 -0.0448 -5.0517 1.1671 35 1 1.5296 -5.2693 3.6242 36 1 -0.9116 -5.4445 3.6628 37 1 -0.7337 -6.8020 2.5253 38 1 -0.5448 -5.9699 6.2019 39 1 -0.9027 -8.5463 2.0842 40 1 -0.3133 -9.7287 0.0088 41 1 1.7422 -11.0762 -0.1026 42 1 3.2221 -11.2412 1.8558 43 1 2.6536 -10.0564 3.9356 44 1 2.2880 -5.6151 0.5080 45 1 2.8873 -4.2793 1.5213 46 1 1.0338 -4.0443 -0.8942 47 1 2.7283 -3.5038 -0.7984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609335018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:52 Heat of formation + Delta-G solvation = 120.018093 kcal Electronic energy + Delta-G solvation = -27337.252364 eV Core-core repulsion = 23714.633771 eV Total energy + Delta-G solvation = -3622.618594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.39003 -38.85859 -38.00581 -35.20955 -33.04771 -32.36890 -31.06144 -30.63799 -29.75634 -29.69603 -28.68139 -25.35788 -23.86749 -23.59591 -22.50698 -22.01935 -21.23427 -20.73435 -19.88132 -19.15651 -17.90576 -16.79229 -16.73877 -15.41593 -15.27274 -14.93372 -14.87340 -14.55683 -14.18591 -14.12476 -13.65120 -13.57937 -13.42442 -13.33737 -13.08155 -12.99634 -12.63526 -12.36650 -12.00561 -11.96954 -11.32968 -11.25854 -11.14021 -10.95940 -10.79976 -10.67863 -10.61411 -10.34531 -10.13833 -9.98282 -9.92691 -9.62107 -9.49115 -8.92628 -8.83485 -8.46232 -8.42230 -7.87985 -6.60304 -5.75493 -3.18276 1.06155 1.42068 1.79975 2.61637 2.69872 3.38676 3.45494 3.48231 3.84056 4.33655 4.52543 4.57039 4.80339 4.90756 4.95741 5.05817 5.16336 5.21000 5.38489 5.42799 5.47571 5.50258 5.62752 5.64704 5.71922 5.80903 5.93905 5.98588 6.02218 6.09454 6.22802 6.25431 6.40314 6.48962 6.51166 6.55077 6.57709 6.63209 6.67872 6.76977 6.90530 6.94832 7.07685 7.09094 7.38530 7.46301 7.51619 7.66924 7.78010 7.83264 8.49890 9.25748 9.89433 10.46958 11.32936 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.002903 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.628619 B = 9642.111828 C =10762.830093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.176 3.824 11 C -0.167 4.167 12 C 0.097 3.903 13 N -0.679 5.679 14 C 0.132 3.868 15 C -0.213 4.213 16 C 0.061 3.939 17 N -0.478 5.478 18 H 0.439 0.561 19 N -0.289 5.289 20 C 0.136 3.864 21 C 0.000 4.000 22 C -0.087 4.087 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.092 4.092 27 C -0.115 4.115 28 C 0.145 3.855 29 H 0.253 0.747 30 H 0.084 0.916 31 H 0.016 0.984 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.335 0.665 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.177 0.823 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.016 0.984 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.180 -19.529 9.853 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.049 3.951 11 C -0.208 4.208 12 C -0.012 4.012 13 N -0.309 5.309 14 C 0.002 3.998 15 C -0.225 4.225 16 C -0.086 4.086 17 N -0.186 5.186 18 H 0.283 0.717 19 N -0.112 5.112 20 C -0.030 4.030 21 C -0.002 4.002 22 C -0.107 4.107 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.141 4.141 26 C -0.112 4.112 27 C -0.155 4.155 28 C 0.018 3.982 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.153 0.847 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.194 0.806 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.034 0.966 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.854 -20.892 10.153 23.244 hybrid contribution -0.226 2.504 0.716 2.614 sum -1.080 -18.388 10.869 21.387 Atomic orbital electron populations 1.70028 1.05244 1.25352 1.54306 1.25058 0.95289 0.98353 1.01017 0.86320 0.79153 0.83735 0.77714 1.21400 1.21642 1.20517 1.19186 0.92204 0.84753 1.41790 0.91817 1.44046 1.35575 1.01928 1.49984 1.20660 0.88635 0.97711 0.88055 1.22858 0.99757 0.97768 1.00387 1.21487 0.98220 0.89480 0.92029 1.60749 1.18665 1.38277 1.13183 1.20244 0.91759 0.94356 0.93408 1.20113 1.12237 0.95959 0.94192 1.22382 1.01048 0.93068 0.92149 1.46151 1.53081 1.10145 1.09201 0.71685 1.77562 1.22535 1.12256 0.98854 1.20590 0.98058 0.92901 0.91431 1.17657 0.95399 0.96979 0.90206 1.21104 0.99161 0.98311 0.92082 1.21047 0.97428 0.97560 0.97627 1.21189 0.94804 0.98972 0.98382 1.21030 0.99748 1.00138 0.93165 1.21118 0.96040 0.95991 0.98027 1.21947 0.96750 0.98865 0.97930 1.20932 0.97533 0.86795 0.92934 0.93744 0.89783 0.96604 0.92749 0.93822 0.91449 0.84746 0.94703 0.90440 0.80636 0.85801 0.85807 0.86158 0.86060 0.86148 0.92610 0.92708 0.96637 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 11.19 55.49 0.62 -25.71 16 2 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 3 Si 0.90 21.77 29.58 -169.99 -5.03 16.74 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 8 H 0.06 1.74 7.88 -52.48 -0.41 1.33 16 9 N -0.59 -14.94 2.99 -172.32 -0.52 -15.45 16 10 C 0.18 4.18 5.29 -3.71 -0.02 4.16 16 11 C -0.17 -3.11 5.34 -26.59 -0.14 -3.25 16 12 C 0.10 1.62 2.42 -67.65 -0.16 1.46 16 13 N -0.68 -9.72 6.25 -107.92 -0.68 -10.39 16 14 C 0.13 1.65 5.53 -4.97 -0.03 1.62 16 15 C -0.21 -2.53 5.57 -104.76 -0.58 -3.12 16 16 C 0.06 0.58 11.87 -17.26 -0.21 0.37 16 17 N -0.48 -4.48 7.35 30.42 0.22 -4.25 16 18 H 0.44 2.56 8.96 -182.62 -1.64 0.92 16 19 N -0.29 -3.67 12.74 33.43 0.43 -3.24 16 20 C 0.14 1.76 6.66 -82.78 -0.55 1.21 16 21 C 0.00 -0.01 5.74 -104.90 -0.60 -0.61 16 22 C -0.09 -1.02 8.83 -39.25 -0.35 -1.37 16 23 C -0.12 -1.25 10.03 -39.63 -0.40 -1.64 16 24 C -0.11 -1.14 10.04 -39.52 -0.40 -1.54 16 25 C -0.12 -1.27 10.03 -39.63 -0.40 -1.67 16 26 C -0.09 -1.10 9.78 -39.26 -0.38 -1.48 16 27 C -0.12 -2.08 5.69 -26.61 -0.15 -2.23 16 28 C 0.14 3.09 6.52 -3.71 -0.02 3.07 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 30 H 0.08 2.25 6.09 -51.93 -0.32 1.93 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.73 7.38 -51.93 -0.38 0.35 16 34 H 0.07 1.17 7.84 -51.93 -0.41 0.76 16 35 H 0.34 4.81 8.44 -39.29 -0.33 4.48 16 36 H 0.03 0.43 7.34 -51.93 -0.38 0.04 16 37 H 0.08 0.97 5.60 -51.93 -0.29 0.68 16 38 H 0.18 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.12 1.35 6.28 -52.49 -0.33 1.03 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.34 8.14 -51.92 -0.42 -0.09 16 47 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -32.01 378.36 -12.14 -44.15 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -8.27 Total: 4.58 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -4.62 Total: -12.13 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.08 Total: -59.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.01 -12.14 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.168 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds