Wall clock time and date at job start Tue Mar 31 2020 14:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99583 * 2 1 4 4 H 1.48500 * 109.46914 * 269.99539 * 3 2 1 5 5 H 1.48496 * 109.47201 * 29.99571 * 3 2 1 6 6 H 1.48505 * 109.47197 * 149.99767 * 3 2 1 7 7 C 1.38804 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99624 * 164.05295 * 7 2 1 9 9 N 1.36933 * 120.00614 * 344.05546 * 7 2 1 10 10 C 1.46935 * 120.62815 * 331.06870 * 9 7 2 11 11 C 1.53187 * 108.89351 * 233.51852 * 10 9 7 12 12 C 1.53081 * 109.29132 * 305.57175 * 11 10 9 13 13 N 1.46899 * 109.45143 * 181.24458 * 12 11 10 14 14 C 1.46901 * 111.00000 * 84.79074 * 13 12 11 15 15 C 1.50704 * 109.47237 * 182.76832 * 14 13 12 16 16 C 1.35080 * 126.07380 * 101.73257 * 15 14 13 17 17 N 1.35039 * 107.98184 * 179.87233 * 16 15 14 18 18 H 0.96997 * 125.93716 * 180.15253 * 17 16 15 19 19 N 1.40078 * 108.13574 * 0.39497 * 17 16 15 20 20 C 1.31620 * 108.10682 * 359.75739 * 19 17 16 21 21 C 1.48421 * 126.03834 * 179.97438 * 20 19 17 22 22 C 1.39323 * 120.11784 * 136.61053 * 21 20 19 23 23 C 1.38028 * 119.87714 * 179.75168 * 22 21 20 24 24 C 1.38321 * 120.11945 * 0.52331 * 23 22 21 25 25 C 1.38322 * 120.23809 * 359.74723 * 24 23 22 26 26 C 1.38023 * 120.12219 * 359.97438 * 25 24 23 27 27 C 1.53043 * 109.65419 * 61.16039 * 12 11 10 28 28 C 1.46923 * 120.63481 * 151.04631 * 9 7 2 29 29 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58397 * 353.37239 * 10 9 7 31 31 H 1.08995 * 109.58675 * 113.65121 * 10 9 7 32 32 H 1.08990 * 109.50357 * 65.38453 * 11 10 9 33 33 H 1.09002 * 109.49728 * 185.48465 * 11 10 9 34 34 H 1.08996 * 109.33724 * 301.13718 * 12 11 10 35 35 H 1.00904 * 111.00166 * 320.83472 * 13 12 11 36 36 H 1.08999 * 109.47041 * 302.77293 * 14 13 12 37 37 H 1.08997 * 109.46859 * 62.77242 * 14 13 12 38 38 H 1.08004 * 126.01143 * 359.97438 * 16 15 14 39 39 H 1.08001 * 120.06442 * 0.02562 * 22 21 20 40 40 H 1.07999 * 119.93946 * 180.29606 * 23 22 21 41 41 H 1.07992 * 119.88212 * 179.77080 * 24 23 22 42 42 H 1.08002 * 119.93883 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.06010 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.49524 * 178.74613 * 27 12 11 45 45 H 1.08997 * 109.50348 * 58.65064 * 27 12 11 46 46 H 1.09009 * 109.58563 * 246.20197 * 28 9 7 47 47 H 1.08992 * 109.58954 * 6.48303 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0592 -1.2201 -0.2565 9 7 1.3653 -2.3651 0.3268 10 6 0.2182 -2.3527 1.2450 11 6 0.4791 -3.3501 2.3781 12 6 0.7945 -4.7235 1.7802 13 7 1.0160 -5.6898 2.8642 14 6 -0.2564 -6.2521 3.3364 15 6 0.0043 -7.1853 4.4907 16 6 -0.1824 -6.9040 5.7986 17 7 0.1615 -7.9970 6.5132 18 1 0.1254 -8.0803 7.4790 19 7 0.5847 -8.9879 5.6181 20 6 0.4918 -8.5034 4.3978 21 6 0.8398 -9.2195 3.1452 22 6 0.0020 -9.1342 2.0353 23 6 0.3331 -9.7980 0.8713 24 6 1.4887 -10.5555 0.8089 25 6 2.3212 -10.6481 1.9097 26 6 2.0027 -9.9838 3.0769 27 6 2.0531 -4.6313 0.9144 28 6 1.8066 -3.6489 -0.2349 29 1 -0.4850 0.8400 -0.0004 30 1 0.0933 -1.3526 1.6602 31 1 -0.6845 -2.6398 0.7059 32 1 1.3268 -3.0111 2.9732 33 1 -0.4054 -3.4209 3.0112 34 1 -0.0448 -5.0517 1.1671 35 1 1.5296 -5.2693 3.6242 36 1 -0.9116 -5.4445 3.6628 37 1 -0.7337 -6.8020 2.5253 38 1 -0.5448 -5.9699 6.2019 39 1 -0.9027 -8.5463 2.0842 40 1 -0.3133 -9.7287 0.0088 41 1 1.7422 -11.0762 -0.1026 42 1 3.2221 -11.2412 1.8558 43 1 2.6536 -10.0564 3.9356 44 1 2.2880 -5.6151 0.5080 45 1 2.8873 -4.2793 1.5213 46 1 1.0338 -4.0443 -0.8942 47 1 2.7283 -3.5038 -0.7984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609335018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:51 Heat of formation + Delta-G solvation = 100.582486 kcal Electronic energy + Delta-G solvation = -27338.095156 eV Core-core repulsion = 23714.633771 eV Total energy + Delta-G solvation = -3623.461385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.20902 -39.65674 -39.54691 -36.70597 -34.35717 -33.59695 -32.29889 -31.65279 -31.44216 -30.53296 -30.06193 -26.92410 -25.29353 -24.41193 -23.72140 -23.34994 -22.81185 -21.56837 -20.97675 -20.49432 -18.93772 -18.51165 -17.57370 -16.87592 -16.26446 -16.17341 -16.05850 -15.77289 -15.31606 -15.29653 -15.15197 -14.94996 -14.73163 -14.56794 -14.25918 -14.03058 -13.76114 -13.61284 -13.41995 -13.09160 -13.00621 -12.80934 -12.54781 -12.38681 -12.12461 -12.01443 -11.95271 -11.90112 -11.77592 -11.60403 -11.30550 -11.13199 -10.76432 -10.53873 -9.74647 -9.69327 -9.28080 -9.07522 -8.62817 -7.85381 -5.31709 0.23501 0.60189 1.01940 1.47029 1.48058 1.58097 1.76181 1.99095 2.52510 3.02116 3.27720 3.43234 3.59943 3.74739 3.96045 4.02965 4.11350 4.18551 4.23858 4.27517 4.36566 4.45349 4.52388 4.58937 4.66091 4.67124 4.75701 4.77846 4.87274 4.93249 4.99204 5.09300 5.11700 5.20652 5.23718 5.28896 5.32876 5.43107 5.43904 5.54102 5.66605 5.68519 5.69713 5.73644 5.76652 6.16410 6.27105 6.42003 6.43487 6.60321 6.68875 7.17648 7.89256 8.41173 9.20438 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.002903 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.628619 B = 9642.111828 C =10762.830093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.610 5.610 10 C 0.182 3.818 11 C -0.150 4.150 12 C 0.111 3.889 13 N -0.674 5.674 14 C 0.138 3.862 15 C -0.238 4.238 16 C 0.080 3.920 17 N -0.466 5.466 18 H 0.454 0.546 19 N -0.320 5.320 20 C 0.123 3.877 21 C -0.020 4.020 22 C -0.100 4.100 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.110 4.110 27 C -0.101 4.101 28 C 0.142 3.858 29 H 0.249 0.751 30 H 0.049 0.951 31 H -0.005 1.005 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.338 0.662 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.212 0.788 39 H 0.125 0.875 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.117 0.883 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.013 0.987 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 -20.348 10.694 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.334 5.334 10 C 0.056 3.944 11 C -0.190 4.190 12 C 0.001 3.999 13 N -0.303 5.303 14 C 0.009 3.991 15 C -0.250 4.250 16 C -0.069 4.069 17 N -0.175 5.175 18 H 0.301 0.699 19 N -0.144 5.144 20 C -0.042 4.042 21 C -0.022 4.022 22 C -0.120 4.120 23 C -0.143 4.143 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.129 4.129 27 C -0.141 4.141 28 C 0.016 3.984 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.013 0.987 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.155 0.845 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.228 0.772 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.135 0.865 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.031 0.969 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.348 -21.757 11.020 24.391 hybrid contribution -0.395 2.692 0.459 2.759 sum -0.743 -19.065 11.479 22.266 Atomic orbital electron populations 1.70181 1.06608 1.25765 1.55544 1.25801 0.96068 1.01417 1.01240 0.85303 0.78073 0.79631 0.77601 1.21118 1.21782 1.19641 1.19503 0.92468 0.86044 1.41350 0.91897 1.44314 1.35701 1.02591 1.50821 1.20482 0.87634 0.97266 0.89048 1.22646 1.00483 0.97340 0.98551 1.21227 0.97265 0.88836 0.92573 1.60685 1.19889 1.36848 1.12890 1.20187 0.90708 0.94499 0.93753 1.20107 1.14231 0.95685 0.94945 1.22870 0.98853 0.93784 0.91389 1.46193 1.51897 1.09546 1.09856 0.69877 1.77500 1.23839 1.13698 0.99321 1.20763 0.98294 0.93499 0.91599 1.17870 0.95995 0.97644 0.90647 1.21230 0.99327 0.98955 0.92447 1.21350 0.97957 0.97177 0.97809 1.21527 0.94325 0.98609 0.99176 1.21327 1.00533 0.99783 0.92702 1.21242 0.96188 0.96757 0.98695 1.21756 0.97125 0.98433 0.96768 1.21058 0.97130 0.86027 0.94184 0.94146 0.93222 0.98723 0.93235 0.91672 0.91770 0.84462 0.93942 0.90741 0.77191 0.85666 0.84052 0.83694 0.83957 0.86511 0.90932 0.93372 0.96891 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 11.19 21.65 0.24 -55.32 16 2 C -0.05 -2.82 4.93 84.86 0.42 -2.40 16 3 Si 0.97 45.12 29.58 68.60 2.03 47.15 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.26 -14.73 9.58 84.03 0.80 -13.93 16 8 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 9 N -0.61 -31.11 2.99 -699.10 -2.09 -33.20 16 10 C 0.18 8.77 5.29 86.36 0.46 9.23 16 11 C -0.15 -5.42 5.34 30.68 0.16 -5.26 16 12 C 0.11 3.55 2.42 44.96 0.11 3.66 16 13 N -0.67 -18.00 6.25 -495.37 -3.10 -21.09 16 14 C 0.14 3.19 5.53 85.56 0.47 3.66 16 15 C -0.24 -5.24 5.57 -19.95 -0.11 -5.35 16 16 C 0.08 1.29 11.87 83.47 0.99 2.29 16 17 N -0.47 -7.78 7.35 -57.67 -0.42 -8.20 16 18 H 0.45 4.28 8.96 -213.34 -1.91 2.37 16 19 N -0.32 -7.84 12.74 -48.16 -0.61 -8.45 16 20 C 0.12 3.11 6.66 42.53 0.28 3.39 16 21 C -0.02 -0.49 5.74 -20.04 -0.11 -0.60 16 22 C -0.10 -2.29 8.83 22.48 0.20 -2.09 16 23 C -0.13 -2.46 10.03 22.24 0.22 -2.23 16 24 C -0.12 -2.13 10.04 22.31 0.22 -1.91 16 25 C -0.13 -2.43 10.03 22.24 0.22 -2.20 16 26 C -0.11 -2.56 9.78 22.48 0.22 -2.34 16 27 C -0.10 -3.53 5.69 30.67 0.17 -3.35 16 28 C 0.14 6.03 6.52 86.36 0.56 6.59 16 29 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.05 2.72 6.09 -2.39 -0.01 2.71 16 31 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 2.08 7.38 -2.39 -0.02 2.06 16 34 H 0.06 2.14 7.84 -2.39 -0.02 2.12 16 35 H 0.34 8.93 8.44 -89.69 -0.76 8.17 16 36 H 0.04 0.92 7.34 -2.39 -0.02 0.91 16 37 H 0.07 1.77 5.60 -2.39 -0.01 1.76 16 38 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.13 2.69 6.28 -2.91 -0.02 2.67 16 40 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 42 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 47 H 0.05 2.15 7.93 -2.39 -0.02 2.14 16 Total: -1.00 -69.96 378.36 -0.33 -70.29 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -1.68 Total: 21.67 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 5.30 Total: -12.84 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -5.99 Total: -126.27 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.96 -0.33 -70.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.874 kcal (2) G-P(sol) polarization free energy of solvation -69.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds