Wall clock time and date at job start Tue Mar 31 2020 14:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00260 * 2 1 4 4 H 1.48501 * 109.47223 * 270.00134 * 3 2 1 5 5 H 1.48497 * 109.47053 * 30.00185 * 3 2 1 6 6 H 1.48497 * 109.46754 * 150.00038 * 3 2 1 7 7 C 1.38815 * 119.99400 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99548 * 163.07301 * 7 2 1 9 9 N 1.36930 * 120.00165 * 343.07098 * 7 2 1 10 10 C 1.46927 * 120.63261 * 331.84972 * 9 7 2 11 11 C 1.53191 * 108.77687 * 233.58728 * 10 9 7 12 12 C 1.53034 * 109.31450 * 305.36488 * 11 10 9 13 13 N 1.46899 * 109.46292 * 181.38662 * 12 11 10 14 14 C 1.46904 * 111.00185 * 154.97654 * 13 12 11 15 15 C 1.50700 * 109.47047 * 180.02562 * 14 13 12 16 16 C 1.39926 * 126.03142 * 269.99532 * 15 14 13 17 17 N 1.30870 * 108.24396 * 179.72023 * 16 15 14 18 18 N 1.40084 * 108.21889 * 0.43775 * 17 16 15 19 19 C 1.40183 * 126.05460 * 179.82143 * 18 17 16 20 20 C 1.38843 * 120.06597 * 179.71145 * 19 18 17 21 21 C 1.38112 * 119.93019 * 179.97438 * 20 19 18 22 22 C 1.38282 * 120.07207 * 359.97438 * 21 20 19 23 23 C 1.38278 * 120.12934 * 359.97438 * 22 21 20 24 24 C 1.38114 * 120.06973 * 0.02562 * 23 22 21 25 25 C 1.35232 * 107.89087 * 359.55655 * 18 17 16 26 26 C 1.53047 * 109.53004 * 61.37101 * 12 11 10 27 27 C 1.46930 * 120.63276 * 151.83096 * 9 7 2 28 28 H 0.97004 * 119.99735 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58707 * 113.79978 * 10 9 7 30 30 H 1.09003 * 109.70299 * 353.44164 * 10 9 7 31 31 H 1.08998 * 109.49669 * 185.41170 * 11 10 9 32 32 H 1.09006 * 109.52423 * 65.33413 * 11 10 9 33 33 H 1.08998 * 109.46099 * 301.35900 * 12 11 10 34 34 H 1.00900 * 111.00230 * 31.01629 * 13 12 11 35 35 H 1.08996 * 109.47582 * 59.99759 * 14 13 12 36 36 H 1.09008 * 109.46399 * 299.99373 * 14 13 12 37 37 H 1.08008 * 125.87434 * 359.97438 * 16 15 14 38 38 H 1.07994 * 120.03348 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.96756 * 180.25210 * 21 20 19 40 40 H 1.07997 * 119.93859 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.96819 * 179.97438 * 23 22 21 42 42 H 1.08007 * 120.03960 * 179.97438 * 24 23 22 43 43 H 1.08002 * 126.13732 * 180.26728 * 25 18 17 44 44 H 1.08996 * 109.49463 * 58.57896 * 26 12 11 45 45 H 1.08994 * 109.49806 * 178.67605 * 26 12 11 46 46 H 1.08996 * 109.58306 * 246.20465 * 27 9 7 47 47 H 1.09003 * 109.58284 * 6.47590 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3699 -2.3625 0.3442 10 6 0.2259 -2.3409 1.2659 11 6 0.4972 -3.3209 2.4117 12 6 0.8116 -4.7021 1.8326 13 7 1.0397 -5.6523 2.9294 14 6 0.7589 -7.0289 2.5003 15 6 1.0029 -7.9729 3.6494 16 6 2.2133 -8.6067 3.9512 17 7 2.0361 -9.3408 5.0200 18 7 0.7028 -9.2058 5.4279 19 6 0.1100 -9.8342 6.5319 20 6 -1.2273 -9.6059 6.8271 21 6 -1.8086 -10.2270 7.9152 22 6 -1.0603 -11.0758 8.7100 23 6 0.2716 -11.3059 8.4179 24 6 0.8585 -10.6878 7.3312 25 6 0.0902 -8.3572 4.5715 26 6 2.0672 -4.6179 0.9616 27 6 1.8136 -3.6528 -0.2008 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6772 -2.6410 0.7345 30 1 0.0966 -1.3359 1.6677 31 1 -0.3834 -3.3862 3.0507 32 1 1.3467 -2.9700 2.9977 33 1 -0.0284 -5.0417 1.2268 34 1 0.4913 -5.4072 3.7401 35 1 1.4134 -7.2911 1.6690 36 1 -0.2809 -7.1053 2.1823 37 1 3.1363 -8.5042 3.3996 38 1 -1.8124 -8.9435 6.2065 39 1 -2.8498 -10.0530 8.1430 40 1 -1.5169 -11.5600 9.5605 41 1 0.8537 -11.9690 9.0407 42 1 1.8990 -10.8676 7.1037 43 1 -0.9420 -8.0427 4.6157 44 1 2.9020 -4.2545 1.5609 45 1 2.3042 -5.6064 0.5684 46 1 1.0400 -4.0598 -0.8518 47 1 2.7330 -3.5126 -0.7693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609335132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:52 Heat of formation + Delta-G solvation = 132.007758 kcal Electronic energy + Delta-G solvation = -26259.710145 eV Core-core repulsion = 22637.611462 eV Total energy + Delta-G solvation = -3622.098683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.78794 -39.34584 -38.00325 -35.33477 -33.78207 -32.40272 -31.58417 -30.77703 -29.94156 -29.55253 -28.58516 -25.56556 -24.18952 -23.55231 -22.92049 -22.05902 -21.17768 -21.01801 -20.09635 -19.03095 -18.36925 -16.75440 -16.52842 -15.62223 -15.58544 -15.28595 -14.97314 -14.86546 -14.34905 -14.21864 -14.03232 -13.95352 -13.55960 -13.44163 -13.21339 -13.04999 -12.97159 -12.28443 -12.10123 -12.07077 -11.83330 -11.58917 -11.33674 -11.02955 -10.80798 -10.70257 -10.66030 -10.55827 -10.30198 -10.15456 -9.89816 -9.56074 -9.47858 -9.46702 -9.22409 -8.43712 -8.28883 -8.06874 -6.62555 -5.75668 -3.17139 0.48772 0.87987 1.90580 2.12507 2.55410 3.37451 3.39827 3.46748 3.49925 4.11926 4.37923 4.51640 4.53275 4.54507 4.64846 4.70779 4.90969 4.99563 5.06707 5.13160 5.35508 5.38677 5.44977 5.48163 5.55120 5.60602 5.70933 5.76597 5.89453 5.91103 5.98277 5.99523 6.03996 6.20624 6.30591 6.39112 6.43079 6.54413 6.59405 6.68022 6.70989 6.87380 6.90015 7.09669 7.39903 7.40790 7.42567 7.66290 7.70221 7.83541 8.49222 9.25357 9.89199 10.46230 11.33138 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.027411 B = 0.001949 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.248576 B =14363.957970 C =14811.138019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.140 4.140 12 C 0.096 3.904 13 N -0.684 5.684 14 C 0.135 3.865 15 C -0.209 4.209 16 C 0.081 3.919 17 N -0.295 5.295 18 N -0.327 5.327 19 C 0.168 3.832 20 C -0.145 4.145 21 C -0.092 4.092 22 C -0.135 4.135 23 C -0.095 4.095 24 C -0.123 4.123 25 C 0.054 3.946 26 C -0.116 4.116 27 C 0.144 3.856 28 H 0.253 0.747 29 H 0.015 0.985 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.335 0.665 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.191 0.809 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.174 0.826 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.014 0.986 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 -22.940 14.812 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.180 4.180 12 C -0.012 4.012 13 N -0.315 5.315 14 C 0.005 3.995 15 C -0.220 4.220 16 C -0.107 4.107 17 N -0.113 5.113 18 N -0.103 5.103 19 C 0.075 3.925 20 C -0.166 4.166 21 C -0.110 4.110 22 C -0.154 4.154 23 C -0.114 4.114 24 C -0.143 4.143 25 C -0.089 4.089 26 C -0.156 4.156 27 C 0.017 3.983 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.152 0.848 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.208 0.792 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.155 0.845 43 H 0.191 0.809 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.404 -23.652 15.539 28.402 hybrid contribution -1.001 1.482 -0.618 1.892 sum -3.405 -22.170 14.921 26.939 Atomic orbital electron populations 1.70031 1.05264 1.25402 1.54271 1.25042 0.95288 0.98397 1.01090 0.86311 0.79206 0.83692 0.77677 1.21441 1.21617 1.20476 1.19183 0.92541 0.84837 1.41277 0.91741 1.44041 1.35842 1.01620 1.49945 1.20727 0.88626 0.98060 0.87846 1.22396 1.00059 0.95395 1.00163 1.21478 0.96834 0.91694 0.91241 1.60650 1.61911 1.00766 1.08192 1.20213 0.98929 0.86955 0.93450 1.20185 0.93450 1.06186 1.02134 1.24020 0.99164 0.93815 0.93682 1.77429 0.93399 1.24712 1.15745 1.45744 1.08223 1.35109 1.21195 1.17594 0.92083 0.95635 0.87161 1.20851 0.92676 1.03060 0.99973 1.20983 1.00137 0.96013 0.93901 1.21230 0.94431 0.99361 1.00347 1.21085 0.95137 0.98841 0.96323 1.20928 1.00906 0.97246 0.95257 1.22379 0.99829 0.94789 0.91894 1.21999 0.97391 0.98443 0.97794 1.20934 0.97494 0.86916 0.92937 0.93719 0.96649 0.89404 0.93768 0.91867 0.94666 0.84752 0.90011 0.94913 0.79236 0.85229 0.85011 0.85471 0.85134 0.84488 0.80860 0.91770 0.93512 0.96816 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 11.19 55.49 0.62 -25.75 16 2 C 0.00 0.00 4.92 -17.43 -0.09 -0.09 16 3 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 8 H 0.06 1.76 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.94 2.99 -172.32 -0.52 -15.46 16 10 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 11 C -0.14 -2.67 5.36 -26.62 -0.14 -2.81 16 12 C 0.10 1.61 2.46 -67.67 -0.17 1.44 16 13 N -0.68 -9.59 6.30 -107.94 -0.68 -10.27 16 14 C 0.13 1.59 5.96 -4.97 -0.03 1.56 16 15 C -0.21 -2.39 5.61 -105.03 -0.59 -2.98 16 16 C 0.08 0.95 11.96 -17.33 -0.21 0.74 16 17 N -0.29 -3.80 11.87 30.64 0.36 -3.44 16 18 N -0.33 -3.85 3.80 -10.70 -0.04 -3.89 16 19 C 0.17 1.73 6.69 -83.59 -0.56 1.17 16 20 C -0.14 -1.17 9.46 -39.40 -0.37 -1.55 16 21 C -0.09 -0.60 10.04 -39.61 -0.40 -1.00 16 22 C -0.13 -0.84 10.04 -39.55 -0.40 -1.24 16 23 C -0.10 -0.68 10.04 -39.61 -0.40 -1.07 16 24 C -0.12 -1.16 9.66 -39.40 -0.38 -1.54 16 25 C 0.05 0.57 10.71 -17.10 -0.18 0.38 16 26 C -0.12 -2.07 5.59 -26.61 -0.15 -2.22 16 27 C 0.14 3.05 6.52 -3.71 -0.02 3.03 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 2.35 6.07 -51.93 -0.31 2.03 16 31 H 0.04 0.75 8.10 -51.93 -0.42 0.32 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.04 0.60 7.80 -51.93 -0.40 0.20 16 34 H 0.33 4.50 8.32 -39.29 -0.33 4.17 16 35 H 0.08 0.97 7.41 -51.93 -0.38 0.59 16 36 H 0.03 0.37 8.06 -51.92 -0.42 -0.05 16 37 H 0.19 1.80 8.06 -52.48 -0.42 1.38 16 38 H 0.13 0.84 6.74 -52.49 -0.35 0.49 16 39 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.14 1.34 7.70 -52.48 -0.40 0.93 16 43 H 0.17 1.34 7.04 -52.49 -0.37 0.97 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.05 0.73 7.42 -51.93 -0.39 0.34 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -31.76 380.55 -10.92 -42.68 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.13 Total: 2.65 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -4.25 Total: -9.07 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.25 Total: -58.81 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.76 -10.92 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.686 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds