Wall clock time and date at job start Tue Mar 31 2020 14:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00260 * 2 1 4 4 H 1.48501 * 109.47223 * 270.00134 * 3 2 1 5 5 H 1.48497 * 109.47053 * 30.00185 * 3 2 1 6 6 H 1.48497 * 109.46754 * 150.00038 * 3 2 1 7 7 C 1.38815 * 119.99400 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99548 * 163.07301 * 7 2 1 9 9 N 1.36930 * 120.00165 * 343.07098 * 7 2 1 10 10 C 1.46927 * 120.63261 * 331.84972 * 9 7 2 11 11 C 1.53191 * 108.77687 * 233.58728 * 10 9 7 12 12 C 1.53034 * 109.31450 * 305.36488 * 11 10 9 13 13 N 1.46899 * 109.46292 * 181.38662 * 12 11 10 14 14 C 1.46904 * 111.00185 * 154.97654 * 13 12 11 15 15 C 1.50700 * 109.47047 * 180.02562 * 14 13 12 16 16 C 1.39926 * 126.03142 * 269.99532 * 15 14 13 17 17 N 1.30870 * 108.24396 * 179.72023 * 16 15 14 18 18 N 1.40084 * 108.21889 * 0.43775 * 17 16 15 19 19 C 1.40183 * 126.05460 * 179.82143 * 18 17 16 20 20 C 1.38843 * 120.06597 * 179.71145 * 19 18 17 21 21 C 1.38112 * 119.93019 * 179.97438 * 20 19 18 22 22 C 1.38282 * 120.07207 * 359.97438 * 21 20 19 23 23 C 1.38278 * 120.12934 * 359.97438 * 22 21 20 24 24 C 1.38114 * 120.06973 * 0.02562 * 23 22 21 25 25 C 1.35232 * 107.89087 * 359.55655 * 18 17 16 26 26 C 1.53047 * 109.53004 * 61.37101 * 12 11 10 27 27 C 1.46930 * 120.63276 * 151.83096 * 9 7 2 28 28 H 0.97004 * 119.99735 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58707 * 113.79978 * 10 9 7 30 30 H 1.09003 * 109.70299 * 353.44164 * 10 9 7 31 31 H 1.08998 * 109.49669 * 185.41170 * 11 10 9 32 32 H 1.09006 * 109.52423 * 65.33413 * 11 10 9 33 33 H 1.08998 * 109.46099 * 301.35900 * 12 11 10 34 34 H 1.00900 * 111.00230 * 31.01629 * 13 12 11 35 35 H 1.08996 * 109.47582 * 59.99759 * 14 13 12 36 36 H 1.09008 * 109.46399 * 299.99373 * 14 13 12 37 37 H 1.08008 * 125.87434 * 359.97438 * 16 15 14 38 38 H 1.07994 * 120.03348 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.96756 * 180.25210 * 21 20 19 40 40 H 1.07997 * 119.93859 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.96819 * 179.97438 * 23 22 21 42 42 H 1.08007 * 120.03960 * 179.97438 * 24 23 22 43 43 H 1.08002 * 126.13732 * 180.26728 * 25 18 17 44 44 H 1.08996 * 109.49463 * 58.57896 * 26 12 11 45 45 H 1.08994 * 109.49806 * 178.67605 * 26 12 11 46 46 H 1.08996 * 109.58306 * 246.20465 * 27 9 7 47 47 H 1.09003 * 109.58284 * 6.47590 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3699 -2.3625 0.3442 10 6 0.2259 -2.3409 1.2659 11 6 0.4972 -3.3209 2.4117 12 6 0.8116 -4.7021 1.8326 13 7 1.0397 -5.6523 2.9294 14 6 0.7589 -7.0289 2.5003 15 6 1.0029 -7.9729 3.6494 16 6 2.2133 -8.6067 3.9512 17 7 2.0361 -9.3408 5.0200 18 7 0.7028 -9.2058 5.4279 19 6 0.1100 -9.8342 6.5319 20 6 -1.2273 -9.6059 6.8271 21 6 -1.8086 -10.2270 7.9152 22 6 -1.0603 -11.0758 8.7100 23 6 0.2716 -11.3059 8.4179 24 6 0.8585 -10.6878 7.3312 25 6 0.0902 -8.3572 4.5715 26 6 2.0672 -4.6179 0.9616 27 6 1.8136 -3.6528 -0.2008 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6772 -2.6410 0.7345 30 1 0.0966 -1.3359 1.6677 31 1 -0.3834 -3.3862 3.0507 32 1 1.3467 -2.9700 2.9977 33 1 -0.0284 -5.0417 1.2268 34 1 0.4913 -5.4072 3.7401 35 1 1.4134 -7.2911 1.6690 36 1 -0.2809 -7.1053 2.1823 37 1 3.1363 -8.5042 3.3996 38 1 -1.8124 -8.9435 6.2065 39 1 -2.8498 -10.0530 8.1430 40 1 -1.5169 -11.5600 9.5605 41 1 0.8537 -11.9690 9.0407 42 1 1.8990 -10.8676 7.1037 43 1 -0.9420 -8.0427 4.6157 44 1 2.9020 -4.2545 1.5609 45 1 2.3042 -5.6064 0.5684 46 1 1.0400 -4.0598 -0.8518 47 1 2.7330 -3.5126 -0.7693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609335132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:51 Heat of formation + Delta-G solvation = 113.999929 kcal Electronic energy + Delta-G solvation = -26260.491023 eV Core-core repulsion = 22637.611462 eV Total energy + Delta-G solvation = -3622.879561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.58199 -39.95805 -39.50727 -36.76531 -34.72701 -33.93010 -32.44549 -31.96627 -31.41600 -30.58956 -29.76547 -26.98209 -25.61847 -24.26639 -23.87866 -23.49705 -22.75560 -21.73393 -20.95194 -20.60184 -19.13338 -18.64228 -17.14955 -16.88066 -16.46984 -16.34458 -16.22055 -15.76426 -15.70207 -15.41997 -15.27864 -14.88107 -14.80664 -14.67529 -14.51294 -14.08405 -13.80766 -13.69221 -13.60918 -13.05183 -13.04526 -12.83581 -12.58918 -12.50541 -12.32094 -12.16247 -12.04871 -11.97246 -11.73479 -11.65856 -11.31189 -11.19464 -11.08681 -10.51971 -10.07160 -10.02613 -9.25812 -8.96749 -8.65384 -7.86212 -5.30666 -0.16306 0.32717 1.18794 1.39448 1.46828 1.48458 1.58444 1.69264 2.52673 2.79756 3.25980 3.36830 3.52148 3.73792 3.76284 3.94287 3.95877 4.04939 4.13836 4.20424 4.26736 4.34397 4.42943 4.46932 4.53329 4.59696 4.69839 4.73471 4.75798 4.84344 4.92313 5.00138 5.01598 5.09708 5.13797 5.17058 5.27894 5.31324 5.37940 5.45843 5.50294 5.56803 5.62027 5.67278 5.77438 5.79766 6.19332 6.23574 6.41586 6.56938 6.60436 7.17080 7.88980 8.40421 9.20280 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.027411 B = 0.001949 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.248576 B =14363.957970 C =14811.138019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.179 3.821 11 C -0.126 4.126 12 C 0.109 3.891 13 N -0.683 5.683 14 C 0.142 3.858 15 C -0.222 4.222 16 C 0.072 3.928 17 N -0.327 5.327 18 N -0.331 5.331 19 C 0.134 3.866 20 C -0.149 4.149 21 C -0.092 4.092 22 C -0.130 4.130 23 C -0.099 4.099 24 C -0.143 4.143 25 C 0.058 3.942 26 C -0.104 4.104 27 C 0.140 3.860 28 H 0.250 0.750 29 H -0.003 1.003 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.341 0.659 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.204 0.796 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.122 0.878 43 H 0.202 0.798 44 H 0.050 0.950 45 H 0.075 0.925 46 H 0.014 0.986 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 -24.421 16.287 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.053 3.947 11 C -0.166 4.166 12 C -0.001 4.001 13 N -0.315 5.315 14 C 0.012 3.988 15 C -0.233 4.233 16 C -0.115 4.115 17 N -0.145 5.145 18 N -0.107 5.107 19 C 0.042 3.958 20 C -0.170 4.170 21 C -0.110 4.110 22 C -0.149 4.149 23 C -0.117 4.117 24 C -0.163 4.163 25 C -0.085 4.085 26 C -0.143 4.143 27 C 0.014 3.986 28 H 0.059 0.941 29 H 0.015 0.985 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.159 0.841 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.221 0.779 38 H 0.162 0.838 39 H 0.178 0.822 40 H 0.174 0.826 41 H 0.169 0.831 42 H 0.140 0.860 43 H 0.218 0.782 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.032 0.968 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.159 -25.178 17.032 30.561 hybrid contribution -0.816 1.826 -1.008 2.239 sum -3.974 -23.352 16.024 28.598 Atomic orbital electron populations 1.70178 1.06590 1.25786 1.55593 1.25789 0.96086 1.01446 1.01426 0.85301 0.78064 0.79649 0.77595 1.21062 1.21795 1.19733 1.19498 0.92782 0.86159 1.40708 0.91836 1.44323 1.35980 1.02406 1.50761 1.20541 0.87759 0.97505 0.88884 1.22153 1.00566 0.95560 0.98294 1.21206 0.96174 0.90944 0.91753 1.60552 1.62257 1.01333 1.07350 1.20164 0.99581 0.85437 0.93592 1.20139 0.93621 1.06864 1.02658 1.24341 1.00012 0.93622 0.93546 1.77379 0.94687 1.25870 1.16610 1.45914 1.07909 1.35206 1.21629 1.17977 0.93265 0.96975 0.87591 1.21129 0.91853 1.03314 1.00672 1.21392 1.01464 0.95176 0.93014 1.21639 0.93920 0.98573 1.00740 1.21374 0.95968 0.98660 0.95689 1.21006 1.00546 0.98259 0.96490 1.22839 1.00860 0.93768 0.91042 1.21820 0.97418 0.98677 0.96426 1.21089 0.97177 0.86012 0.94325 0.94128 0.98510 0.92889 0.91448 0.93085 0.94542 0.84086 0.89866 0.93811 0.77924 0.83804 0.82234 0.82609 0.83132 0.85980 0.78168 0.93092 0.90653 0.96823 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.85 11.19 21.65 0.24 -55.61 16 2 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 3 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.26 -14.68 9.58 84.04 0.81 -13.87 16 8 H 0.06 3.50 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -31.26 2.99 -699.09 -2.09 -33.35 16 10 C 0.18 8.71 5.30 86.36 0.46 9.17 16 11 C -0.13 -4.70 5.36 30.67 0.16 -4.54 16 12 C 0.11 3.44 2.46 44.94 0.11 3.55 16 13 N -0.68 -17.63 6.30 -495.43 -3.12 -20.75 16 14 C 0.14 3.02 5.96 85.56 0.51 3.53 16 15 C -0.22 -4.74 5.61 -20.13 -0.11 -4.85 16 16 C 0.07 1.64 11.96 85.25 1.02 2.66 16 17 N -0.33 -8.47 11.87 -56.96 -0.68 -9.15 16 18 N -0.33 -7.61 3.80 -187.76 -0.71 -8.32 16 19 C 0.13 2.67 6.69 38.09 0.25 2.92 16 20 C -0.15 -2.13 9.46 22.38 0.21 -1.91 16 21 C -0.09 -0.93 10.04 22.25 0.22 -0.71 16 22 C -0.13 -1.25 10.04 22.29 0.22 -1.03 16 23 C -0.10 -1.24 10.04 22.25 0.22 -1.02 16 24 C -0.14 -2.68 9.66 22.38 0.22 -2.46 16 25 C 0.06 1.14 10.71 83.49 0.89 2.03 16 26 C -0.10 -3.53 5.59 30.67 0.17 -3.36 16 27 C 0.14 5.87 6.52 86.36 0.56 6.44 16 28 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.05 2.92 6.07 -2.39 -0.01 2.91 16 31 H 0.07 2.18 8.10 -2.39 -0.02 2.16 16 32 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.04 1.17 7.80 -2.39 -0.02 1.15 16 34 H 0.34 8.32 8.32 -89.69 -0.75 7.57 16 35 H 0.08 1.76 7.41 -2.39 -0.02 1.74 16 36 H 0.04 0.86 8.06 -2.38 -0.02 0.84 16 37 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.14 1.50 6.74 -2.91 -0.02 1.48 16 39 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 40 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 41 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 42 H 0.12 2.54 7.70 -2.91 -0.02 2.52 16 43 H 0.20 2.56 7.04 -2.91 -0.02 2.54 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.07 2.15 7.42 -2.39 -0.02 2.13 16 46 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.05 2.18 7.93 -2.39 -0.02 2.16 16 Total: -1.00 -70.33 380.55 2.24 -68.08 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.22 Total: 17.54 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 6.35 Total: -6.01 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -6.36 Total: -127.18 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -70.33 2.24 -68.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.085 kcal (2) G-P(sol) polarization free energy of solvation -70.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds