Wall clock time and date at job start Tue Mar 31 2020 14:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00435 * 2 1 4 4 H 1.48498 * 109.47017 * 272.94882 * 3 2 1 5 5 H 1.48504 * 109.46831 * 32.94700 * 3 2 1 6 6 H 1.48499 * 109.47363 * 152.94304 * 3 2 1 7 7 C 1.38820 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99659 * 339.33168 * 7 2 1 9 9 N 1.36928 * 119.99805 * 159.34443 * 7 2 1 10 10 C 1.46928 * 120.63472 * 332.62365 * 9 7 2 11 11 C 1.53185 * 108.77543 * 233.59145 * 10 9 7 12 12 C 1.53039 * 109.31724 * 305.36335 * 11 10 9 13 13 N 1.46896 * 109.46315 * 181.38841 * 12 11 10 14 14 C 1.46907 * 111.00251 * 154.97148 * 13 12 11 15 15 C 1.50696 * 109.47449 * 180.02562 * 14 13 12 16 16 C 1.38307 * 119.96458 * 270.23612 * 15 14 13 17 17 C 1.38255 * 120.13207 * 180.27702 * 16 15 14 18 18 C 1.38142 * 120.06468 * 359.76477 * 17 16 15 19 19 C 1.38814 * 119.93614 * 359.97438 * 18 17 16 20 20 N 1.40186 * 120.06829 * 180.02562 * 19 18 17 21 21 C 1.35219 * 126.05190 * 359.97438 * 20 19 18 22 22 C 1.35323 * 107.71412 * 179.97438 * 21 20 19 23 23 C 1.39922 * 107.92645 * 0.02562 * 22 21 20 24 24 N 1.30871 * 108.24607 * 359.75658 * 23 22 21 25 25 C 1.38092 * 119.96851 * 89.99617 * 15 14 13 26 26 C 1.53037 * 109.52647 * 61.36905 * 12 11 10 27 27 C 1.46934 * 120.63018 * 152.60595 * 9 7 2 28 28 H 0.97003 * 119.99860 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.58648 * 113.79913 * 10 9 7 30 30 H 1.09001 * 109.69798 * 353.44498 * 10 9 7 31 31 H 1.09002 * 109.49992 * 185.40728 * 11 10 9 32 32 H 1.09001 * 109.49905 * 65.31537 * 11 10 9 33 33 H 1.09004 * 109.45871 * 301.36212 * 12 11 10 34 34 H 1.00905 * 110.99920 * 278.92416 * 13 12 11 35 35 H 1.09003 * 109.46653 * 59.99497 * 14 13 12 36 36 H 1.09006 * 109.46719 * 299.99935 * 14 13 12 37 37 H 1.08002 * 119.93550 * 0.02562 * 16 15 14 38 38 H 1.07998 * 119.96547 * 179.73801 * 17 16 15 39 39 H 1.08006 * 120.02851 * 179.97438 * 18 17 16 40 40 H 1.08004 * 126.14388 * 0.02562 * 21 20 19 41 41 H 1.07999 * 126.03637 * 180.02562 * 22 21 20 42 42 H 1.07998 * 125.87478 * 180.02562 * 23 22 21 43 43 H 1.08004 * 120.03493 * 359.97438 * 25 15 14 44 44 H 1.09003 * 109.49357 * 58.58684 * 26 12 11 45 45 H 1.09005 * 109.49971 * 178.67929 * 26 12 11 46 46 H 1.09000 * 109.58371 * 246.19524 * 27 9 7 47 47 H 1.09002 * 109.58432 * 6.48104 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4354 2.0823 -1.3982 5 1 1.4803 2.6338 0.7615 6 1 3.5776 1.4229 0.6368 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1075 0.3292 9 7 3.3135 -1.2402 -0.4189 10 6 3.8172 -0.2585 -1.3891 11 6 4.4620 -1.0080 -2.5592 12 6 5.5287 -1.9646 -2.0215 13 7 6.1722 -2.6607 -3.1436 14 6 7.5255 -3.1036 -2.7820 15 6 8.1528 -3.8113 -3.9553 16 6 7.9910 -5.1767 -4.1055 17 6 8.5698 -5.8304 -5.1774 18 6 9.3075 -5.1203 -6.1047 19 6 9.4671 -3.7490 -5.9597 20 7 10.2148 -3.0256 -6.8993 21 6 10.8320 -3.5364 -7.9886 22 6 11.4416 -2.5146 -8.6334 23 6 11.1897 -1.3406 -7.9150 24 7 10.4508 -1.6450 -6.8786 25 6 8.8843 -3.0952 -4.8821 26 6 4.8748 -2.9901 -1.0927 27 6 4.2349 -2.2632 0.0943 28 1 -0.4850 0.8401 0.0004 29 1 4.5596 0.3802 -0.9107 30 1 2.9922 0.3518 -1.7563 31 1 4.9244 -0.2924 -3.2391 32 1 3.6993 -1.5760 -3.0920 33 1 6.2778 -1.3987 -1.4676 34 1 5.6096 -3.4372 -3.4579 35 1 7.4700 -3.7853 -1.9333 36 1 8.1315 -2.2381 -2.5139 37 1 7.4148 -5.7340 -3.3816 38 1 8.4453 -6.8973 -5.2898 39 1 9.7598 -5.6317 -6.9417 40 1 10.8369 -4.5734 -8.2904 41 1 12.0202 -2.5917 -9.5420 42 1 11.5407 -0.3526 -8.1738 43 1 9.0067 -2.0284 -4.7667 44 1 4.1082 -3.5392 -1.6395 45 1 5.6311 -3.6855 -0.7285 46 1 5.0115 -1.7879 0.6936 47 1 3.6843 -2.9759 0.7083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610760272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:55 Heat of formation + Delta-G solvation = 137.180820 kcal Electronic energy + Delta-G solvation = -26570.015498 eV Core-core repulsion = 22948.141136 eV Total energy + Delta-G solvation = -3621.874362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.81492 -39.61221 -38.28741 -35.61425 -33.82795 -32.58143 -31.51117 -30.68667 -30.35175 -29.54841 -29.05519 -25.81487 -24.04602 -23.78477 -22.80262 -22.39984 -21.41679 -20.93644 -20.45778 -19.55780 -18.27062 -16.84830 -16.50916 -15.81559 -15.64110 -15.55719 -15.36297 -14.80486 -14.47274 -14.18062 -14.09868 -13.91196 -13.70756 -13.65253 -13.17693 -13.02151 -12.94371 -12.72731 -12.38709 -12.27879 -11.97038 -11.77626 -11.70698 -11.29443 -10.96096 -10.82669 -10.79800 -10.62039 -10.54888 -10.15819 -10.04341 -9.67720 -9.48704 -9.43742 -9.19163 -8.60377 -8.37687 -8.20288 -6.95771 -5.92999 -3.28439 0.52291 0.98638 1.86891 2.06272 2.44390 3.35341 3.40953 3.50673 3.53872 4.07811 4.31883 4.36507 4.55520 4.56592 4.59121 4.77777 4.89826 4.96908 4.98610 5.03300 5.21778 5.27145 5.31528 5.33473 5.39874 5.51329 5.54963 5.59771 5.67678 5.71564 5.87528 5.93282 6.01736 6.09543 6.17357 6.21176 6.27047 6.30843 6.34967 6.42485 6.51562 6.62738 6.67977 6.74072 6.86616 6.93954 7.19618 7.29910 7.48605 7.98660 8.34484 8.96376 9.74418 10.12549 11.23044 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.002325 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.643839 B =12040.233806 C =13039.042169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.259 4.259 8 H 0.084 0.916 9 N -0.606 5.606 10 C 0.125 3.875 11 C -0.118 4.118 12 C 0.095 3.905 13 N -0.681 5.681 14 C 0.096 3.904 15 C -0.052 4.052 16 C -0.121 4.121 17 C -0.093 4.093 18 C -0.144 4.144 19 C 0.153 3.847 20 N -0.320 5.320 21 C 0.051 3.949 22 C -0.264 4.264 23 C 0.052 3.948 24 N -0.286 5.286 25 C -0.095 4.095 26 C -0.162 4.162 27 C 0.153 3.847 28 H 0.262 0.738 29 H 0.024 0.976 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.341 0.659 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.177 0.823 41 H 0.153 0.847 42 H 0.189 0.811 43 H 0.139 0.861 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.021 0.979 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.143 -11.334 -14.996 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.177 4.177 3 Si 0.714 3.286 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.388 4.388 8 H 0.102 0.898 9 N -0.330 5.330 10 C -0.001 4.001 11 C -0.158 4.158 12 C -0.014 4.014 13 N -0.311 5.311 14 C -0.033 4.033 15 C -0.053 4.053 16 C -0.141 4.141 17 C -0.112 4.112 18 C -0.165 4.165 19 C 0.061 3.939 20 N -0.095 5.095 21 C -0.092 4.092 22 C -0.293 4.293 23 C -0.135 4.135 24 N -0.105 5.105 25 C -0.116 4.116 26 C -0.202 4.202 27 C 0.026 3.974 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.159 0.841 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.194 0.806 41 H 0.171 0.829 42 H 0.206 0.794 43 H 0.157 0.843 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.039 0.961 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.565 -10.241 -14.191 29.352 hybrid contribution 0.688 -0.122 -0.332 0.773 sum 24.253 -10.363 -14.522 30.108 Atomic orbital electron populations 1.69840 1.05734 1.26532 1.53103 1.25282 0.95238 0.97620 0.99518 0.86935 0.79969 0.84618 0.77057 1.21541 1.23219 1.19623 1.18909 0.85014 0.94701 1.40138 0.89820 1.44368 1.08596 1.33337 1.46696 1.21356 0.97200 0.92052 0.89448 1.21987 0.97049 0.98156 0.98626 1.21529 0.95557 0.94800 0.89521 1.60739 1.02250 1.31535 1.36544 1.20924 0.91183 0.98415 0.92795 1.19769 0.96154 0.93258 0.96127 1.21183 1.00213 0.94083 0.98584 1.20907 0.96544 0.99968 0.93750 1.20751 1.02927 0.91294 1.01521 1.17556 0.95730 0.90238 0.90326 1.45930 1.38821 1.05825 1.18940 1.22628 0.96975 1.00641 0.88965 1.21608 1.10657 0.91843 1.05192 1.24106 0.96570 1.00219 0.92624 1.77526 1.20399 0.89809 1.22727 1.20772 0.97297 1.00980 0.92513 1.22701 0.99617 0.98312 0.99614 1.20829 0.92360 0.91347 0.92884 0.92798 0.95857 0.90832 0.92201 0.91810 0.91073 0.84143 0.93860 0.90086 0.85446 0.84980 0.85486 0.80638 0.82921 0.79383 0.84313 0.91720 0.93153 0.96138 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.15 13.97 55.49 0.78 -27.38 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.76 24.34 -169.99 -4.14 18.62 16 4 H -0.29 -7.18 6.62 56.52 0.37 -6.80 16 5 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -6.86 6.63 56.52 0.37 -6.49 16 7 C -0.26 -7.31 10.04 -15.06 -0.15 -7.46 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 9 N -0.61 -14.48 2.77 -172.32 -0.48 -14.96 16 10 C 0.13 2.78 4.20 -3.71 -0.02 2.77 16 11 C -0.12 -2.17 5.69 -26.62 -0.15 -2.32 16 12 C 0.10 1.47 2.43 -67.68 -0.16 1.31 16 13 N -0.68 -9.01 6.24 -107.94 -0.67 -9.68 16 14 C 0.10 1.07 5.61 -4.97 -0.03 1.04 16 15 C -0.05 -0.55 5.39 -104.65 -0.56 -1.12 16 16 C -0.12 -1.08 9.70 -39.55 -0.38 -1.46 16 17 C -0.09 -0.72 10.04 -39.61 -0.40 -1.12 16 18 C -0.14 -1.20 9.46 -39.40 -0.37 -1.58 16 19 C 0.15 1.67 6.69 -83.59 -0.56 1.11 16 20 N -0.32 -3.55 3.80 -10.70 -0.04 -3.60 16 21 C 0.05 0.42 10.80 -17.10 -0.18 0.23 16 22 C -0.26 -2.02 10.81 -39.99 -0.43 -2.45 16 23 C 0.05 0.47 12.03 -17.33 -0.21 0.26 16 24 N -0.29 -3.49 11.87 30.64 0.36 -3.13 16 25 C -0.10 -1.12 9.31 -39.41 -0.37 -1.49 16 26 C -0.16 -2.55 5.33 -26.61 -0.14 -2.70 16 27 C 0.15 2.98 6.52 -3.71 -0.02 2.95 16 28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.02 0.52 7.07 -51.93 -0.37 0.15 16 30 H 0.07 1.80 4.50 -51.93 -0.23 1.56 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.12 7.80 -51.93 -0.40 0.71 16 34 H 0.34 4.35 8.47 -39.29 -0.33 4.02 16 35 H 0.04 0.45 7.36 -51.93 -0.38 0.07 16 36 H 0.08 0.93 8.00 -51.93 -0.42 0.51 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.73 6.74 -52.48 -0.35 0.37 16 40 H 0.18 0.81 7.04 -52.48 -0.37 0.44 16 41 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.14 1.80 7.70 -52.48 -0.40 1.39 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.67 7.42 -51.93 -0.39 0.29 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -33.36 373.80 -9.85 -43.21 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.06 Total: 2.73 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -4.24 Total: -11.45 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.05 Total: -58.75 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.14 Total: 18.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.36 -9.85 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610760272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.395 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds