Wall clock time and date at job start Tue Mar 31 2020 14:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00435 * 2 1 4 4 H 1.48498 * 109.47017 * 272.94882 * 3 2 1 5 5 H 1.48504 * 109.46831 * 32.94700 * 3 2 1 6 6 H 1.48499 * 109.47363 * 152.94304 * 3 2 1 7 7 C 1.38820 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99659 * 339.33168 * 7 2 1 9 9 N 1.36928 * 119.99805 * 159.34443 * 7 2 1 10 10 C 1.46928 * 120.63472 * 332.62365 * 9 7 2 11 11 C 1.53185 * 108.77543 * 233.59145 * 10 9 7 12 12 C 1.53039 * 109.31724 * 305.36335 * 11 10 9 13 13 N 1.46896 * 109.46315 * 181.38841 * 12 11 10 14 14 C 1.46907 * 111.00251 * 154.97148 * 13 12 11 15 15 C 1.50696 * 109.47449 * 180.02562 * 14 13 12 16 16 C 1.38307 * 119.96458 * 270.23612 * 15 14 13 17 17 C 1.38255 * 120.13207 * 180.27702 * 16 15 14 18 18 C 1.38142 * 120.06468 * 359.76477 * 17 16 15 19 19 C 1.38814 * 119.93614 * 359.97438 * 18 17 16 20 20 N 1.40186 * 120.06829 * 180.02562 * 19 18 17 21 21 C 1.35219 * 126.05190 * 359.97438 * 20 19 18 22 22 C 1.35323 * 107.71412 * 179.97438 * 21 20 19 23 23 C 1.39922 * 107.92645 * 0.02562 * 22 21 20 24 24 N 1.30871 * 108.24607 * 359.75658 * 23 22 21 25 25 C 1.38092 * 119.96851 * 89.99617 * 15 14 13 26 26 C 1.53037 * 109.52647 * 61.36905 * 12 11 10 27 27 C 1.46934 * 120.63018 * 152.60595 * 9 7 2 28 28 H 0.97003 * 119.99860 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.58648 * 113.79913 * 10 9 7 30 30 H 1.09001 * 109.69798 * 353.44498 * 10 9 7 31 31 H 1.09002 * 109.49992 * 185.40728 * 11 10 9 32 32 H 1.09001 * 109.49905 * 65.31537 * 11 10 9 33 33 H 1.09004 * 109.45871 * 301.36212 * 12 11 10 34 34 H 1.00905 * 110.99920 * 278.92416 * 13 12 11 35 35 H 1.09003 * 109.46653 * 59.99497 * 14 13 12 36 36 H 1.09006 * 109.46719 * 299.99935 * 14 13 12 37 37 H 1.08002 * 119.93550 * 0.02562 * 16 15 14 38 38 H 1.07998 * 119.96547 * 179.73801 * 17 16 15 39 39 H 1.08006 * 120.02851 * 179.97438 * 18 17 16 40 40 H 1.08004 * 126.14388 * 0.02562 * 21 20 19 41 41 H 1.07999 * 126.03637 * 180.02562 * 22 21 20 42 42 H 1.07998 * 125.87478 * 180.02562 * 23 22 21 43 43 H 1.08004 * 120.03493 * 359.97438 * 25 15 14 44 44 H 1.09003 * 109.49357 * 58.58684 * 26 12 11 45 45 H 1.09005 * 109.49971 * 178.67929 * 26 12 11 46 46 H 1.09000 * 109.58371 * 246.19524 * 27 9 7 47 47 H 1.09002 * 109.58432 * 6.48104 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4354 2.0823 -1.3982 5 1 1.4803 2.6338 0.7615 6 1 3.5776 1.4229 0.6368 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1075 0.3292 9 7 3.3135 -1.2402 -0.4189 10 6 3.8172 -0.2585 -1.3891 11 6 4.4620 -1.0080 -2.5592 12 6 5.5287 -1.9646 -2.0215 13 7 6.1722 -2.6607 -3.1436 14 6 7.5255 -3.1036 -2.7820 15 6 8.1528 -3.8113 -3.9553 16 6 7.9910 -5.1767 -4.1055 17 6 8.5698 -5.8304 -5.1774 18 6 9.3075 -5.1203 -6.1047 19 6 9.4671 -3.7490 -5.9597 20 7 10.2148 -3.0256 -6.8993 21 6 10.8320 -3.5364 -7.9886 22 6 11.4416 -2.5146 -8.6334 23 6 11.1897 -1.3406 -7.9150 24 7 10.4508 -1.6450 -6.8786 25 6 8.8843 -3.0952 -4.8821 26 6 4.8748 -2.9901 -1.0927 27 6 4.2349 -2.2632 0.0943 28 1 -0.4850 0.8401 0.0004 29 1 4.5596 0.3802 -0.9107 30 1 2.9922 0.3518 -1.7563 31 1 4.9244 -0.2924 -3.2391 32 1 3.6993 -1.5760 -3.0920 33 1 6.2778 -1.3987 -1.4676 34 1 5.6096 -3.4372 -3.4579 35 1 7.4700 -3.7853 -1.9333 36 1 8.1315 -2.2381 -2.5139 37 1 7.4148 -5.7340 -3.3816 38 1 8.4453 -6.8973 -5.2898 39 1 9.7598 -5.6317 -6.9417 40 1 10.8369 -4.5734 -8.2904 41 1 12.0202 -2.5917 -9.5420 42 1 11.5407 -0.3526 -8.1738 43 1 9.0067 -2.0284 -4.7667 44 1 4.1082 -3.5392 -1.6395 45 1 5.6311 -3.6855 -0.7285 46 1 5.0115 -1.7879 0.6936 47 1 3.6843 -2.9759 0.7083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610760272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:54 Heat of formation + Delta-G solvation = 115.870415 kcal Electronic energy + Delta-G solvation = -26570.939587 eV Core-core repulsion = 22948.141136 eV Total energy + Delta-G solvation = -3622.798451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.45928 -40.39749 -39.65143 -36.93615 -34.82624 -34.00128 -32.82680 -31.93990 -31.50415 -30.64966 -29.85786 -27.11314 -25.54371 -24.51570 -24.26840 -23.22796 -22.95421 -21.59563 -21.28637 -20.91252 -19.06469 -18.70626 -17.36483 -17.15739 -16.60696 -16.32421 -16.28206 -15.98327 -15.90208 -15.50012 -15.29335 -15.01637 -14.75605 -14.61280 -14.40124 -14.22809 -14.12159 -13.77537 -13.61272 -13.41849 -13.29822 -13.23317 -12.60814 -12.55715 -12.41013 -12.22392 -12.09903 -11.93038 -11.70562 -11.64193 -11.45828 -11.33627 -11.22454 -10.71662 -10.13395 -9.91512 -9.31924 -9.01065 -8.94302 -8.18035 -5.49071 -0.13559 0.29375 1.22154 1.29235 1.39141 1.44112 1.48469 1.84866 2.40420 2.69302 3.04226 3.24923 3.38867 3.48577 3.80418 3.85802 3.90129 3.98490 4.04765 4.15961 4.19003 4.31279 4.32978 4.35086 4.38908 4.50651 4.61455 4.67982 4.71342 4.75594 4.76633 4.83099 4.89680 4.98752 4.99554 5.04850 5.11911 5.14192 5.24085 5.26692 5.38123 5.44133 5.54157 5.68873 5.79229 5.85567 6.06842 6.11439 6.23420 6.45520 6.64700 6.90981 7.61686 8.02616 9.01871 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.002325 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.643839 B =12040.233806 C =13039.042169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.037 4.037 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.310 1.310 6 H -0.261 1.261 7 C -0.247 4.247 8 H 0.053 0.947 9 N -0.620 5.620 10 C 0.121 3.879 11 C -0.110 4.110 12 C 0.106 3.894 13 N -0.683 5.683 14 C 0.100 3.900 15 C -0.062 4.062 16 C -0.124 4.124 17 C -0.087 4.087 18 C -0.140 4.140 19 C 0.134 3.866 20 N -0.336 5.336 21 C 0.046 3.954 22 C -0.267 4.267 23 C 0.046 3.954 24 N -0.341 5.341 25 C -0.119 4.119 26 C -0.147 4.147 27 C 0.145 3.855 28 H 0.261 0.739 29 H 0.032 0.968 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.345 0.655 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.145 0.855 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.212 0.788 41 H 0.182 0.818 42 H 0.212 0.788 43 H 0.113 0.887 44 H 0.055 0.945 45 H 0.085 0.915 46 H 0.034 0.966 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.138 -13.281 -16.533 34.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.231 4.231 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.239 1.239 6 H -0.186 1.186 7 C -0.376 4.376 8 H 0.070 0.930 9 N -0.345 5.345 10 C -0.004 4.004 11 C -0.150 4.150 12 C -0.004 4.004 13 N -0.313 5.313 14 C -0.028 4.028 15 C -0.063 4.063 16 C -0.143 4.143 17 C -0.105 4.105 18 C -0.160 4.160 19 C 0.042 3.958 20 N -0.112 5.112 21 C -0.096 4.096 22 C -0.295 4.295 23 C -0.140 4.140 24 N -0.161 5.161 25 C -0.140 4.140 26 C -0.187 4.187 27 C 0.020 3.980 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.164 0.836 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.163 0.837 38 H 0.183 0.817 39 H 0.174 0.826 40 H 0.228 0.772 41 H 0.199 0.801 42 H 0.229 0.771 43 H 0.131 0.869 44 H 0.073 0.927 45 H 0.103 0.897 46 H 0.052 0.948 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 26.624 -12.207 -15.748 33.254 hybrid contribution -0.173 0.363 0.075 0.409 sum 26.451 -11.844 -15.673 32.948 Atomic orbital electron populations 1.69965 1.07345 1.27163 1.55843 1.25903 0.95854 1.00926 1.00442 0.85915 0.78756 0.80379 0.77418 1.20411 1.23931 1.18578 1.18870 0.86861 0.93481 1.38426 0.92967 1.44505 1.07835 1.34662 1.47504 1.21374 0.96552 0.92084 0.90398 1.21834 0.97463 0.98609 0.97058 1.21303 0.94765 0.94402 0.89931 1.60604 1.03089 1.32140 1.35496 1.20899 0.89645 0.98571 0.93702 1.19709 0.96627 0.94106 0.95826 1.21438 1.00172 0.93314 0.99378 1.21325 0.95057 1.01483 0.92631 1.21130 1.02360 0.90177 1.02365 1.17866 0.96155 0.91403 0.90364 1.46081 1.39604 1.05621 1.19869 1.23337 0.95916 1.02449 0.87895 1.22031 1.10541 0.91023 1.05890 1.24684 0.95477 1.01932 0.91935 1.77470 1.22582 0.91244 1.24800 1.20683 0.99160 1.00053 0.94068 1.22547 0.99940 0.98374 0.97882 1.21053 0.91902 0.90493 0.94580 0.92986 0.95046 0.93465 0.91146 0.93130 0.90629 0.83639 0.92303 0.90834 0.83673 0.81701 0.82591 0.77180 0.80058 0.77102 0.86889 0.92661 0.89700 0.94753 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.25 13.97 21.65 0.30 -60.95 16 2 C -0.04 -2.19 5.23 84.86 0.44 -1.74 16 3 Si 0.95 47.89 24.34 68.60 1.67 49.56 16 4 H -0.28 -13.41 6.62 99.48 0.66 -12.75 16 5 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 6 H -0.26 -12.64 6.63 99.48 0.66 -11.98 16 7 C -0.25 -14.23 10.04 84.04 0.84 -13.38 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 9 N -0.62 -29.49 2.77 -699.09 -1.94 -31.42 16 10 C 0.12 5.28 4.20 86.36 0.36 5.65 16 11 C -0.11 -3.91 5.69 30.67 0.17 -3.73 16 12 C 0.11 3.06 2.43 44.94 0.11 3.17 16 13 N -0.68 -16.80 6.24 -495.43 -3.09 -19.89 16 14 C 0.10 2.05 5.61 85.55 0.48 2.53 16 15 C -0.06 -1.22 5.39 -19.88 -0.11 -1.33 16 16 C -0.12 -1.84 9.70 22.29 0.22 -1.63 16 17 C -0.09 -1.02 10.04 22.25 0.22 -0.80 16 18 C -0.14 -1.93 9.46 22.38 0.21 -1.72 16 19 C 0.13 2.80 6.69 38.09 0.25 3.05 16 20 N -0.34 -7.23 3.80 -187.76 -0.71 -7.95 16 21 C 0.05 0.65 10.80 83.50 0.90 1.56 16 22 C -0.27 -3.53 10.81 22.00 0.24 -3.30 16 23 C 0.05 0.80 12.03 85.24 1.03 1.83 16 24 N -0.34 -8.49 11.87 -56.97 -0.68 -9.17 16 25 C -0.12 -2.81 9.31 22.38 0.21 -2.60 16 26 C -0.15 -4.29 5.33 30.67 0.16 -4.13 16 27 C 0.14 5.46 6.52 86.36 0.56 6.03 16 28 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 29 H 0.03 1.33 7.07 -2.39 -0.02 1.31 16 30 H 0.05 2.30 4.50 -2.39 -0.01 2.29 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.17 7.80 -2.39 -0.02 2.15 16 34 H 0.34 8.07 8.47 -89.69 -0.76 7.31 16 35 H 0.06 1.03 7.36 -2.39 -0.02 1.01 16 36 H 0.07 1.61 8.00 -2.38 -0.02 1.59 16 37 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.16 1.13 6.74 -2.91 -0.02 1.11 16 40 H 0.21 1.16 7.04 -2.91 -0.02 1.14 16 41 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.21 2.23 8.06 -2.91 -0.02 2.20 16 43 H 0.11 3.15 7.70 -2.91 -0.02 3.12 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 1.94 7.42 -2.38 -0.02 1.92 16 46 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 Total: -1.00 -75.91 373.80 1.99 -73.92 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.12 Total: 16.44 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 6.31 Total: -10.54 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -6.11 Total: -129.38 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.67 Total: 49.56 kcal Total: -75.91 1.99 -73.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610760272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.794 kcal (2) G-P(sol) polarization free energy of solvation -75.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds