Wall clock time and date at job start Tue Mar 31 2020 14:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00331 * 2 1 4 4 H 1.48499 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47555 * 300.00658 * 3 2 1 6 6 H 1.48506 * 109.46854 * 60.00835 * 3 2 1 7 7 C 1.37881 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00321 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47419 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47182 * 305.00423 * 10 9 7 12 12 N 1.46905 * 109.46646 * 65.00173 * 10 9 7 13 13 C 1.46899 * 110.99692 * 204.99930 * 12 10 9 14 14 C 1.53004 * 109.47314 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.33518 * 54.78782 * 14 13 12 16 16 C 1.53286 * 109.40048 * 294.99896 * 14 13 12 17 17 N 1.47629 * 108.50609 * 177.08334 * 16 14 13 18 18 C 1.39685 * 116.08433 * 43.25308 * 17 16 14 19 19 C 1.35090 * 129.51793 * 167.35679 * 18 17 16 20 20 C 1.40097 * 107.60692 * 180.18041 * 19 18 17 21 21 N 1.31133 * 108.38696 * 359.97438 * 20 19 18 22 22 N 1.35863 * 122.53511 * 347.47801 * 18 17 16 23 23 C 1.46528 * 123.78773 * 359.76368 * 22 18 17 24 24 C 1.50698 * 109.47418 * 184.99830 * 10 9 7 25 25 C 1.38234 * 120.00446 * 279.73456 * 24 10 9 26 26 C 1.38232 * 120.00280 * 179.76428 * 25 24 10 27 27 C 1.38235 * 119.99991 * 0.48229 * 26 25 24 28 28 C 1.38238 * 119.99959 * 359.78694 * 27 26 25 29 29 C 1.38237 * 119.99912 * 359.96150 * 28 27 26 30 30 H 0.96999 * 119.99766 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46818 * 60.00073 * 9 7 2 32 32 H 1.08998 * 109.47069 * 300.00769 * 9 7 2 33 33 H 1.00896 * 111.00308 * 81.04918 * 12 10 9 34 34 H 1.08998 * 109.47785 * 60.00028 * 13 12 10 35 35 H 1.09000 * 109.47671 * 300.00028 * 13 12 10 36 36 H 1.08998 * 109.63138 * 296.79606 * 16 14 13 37 37 H 1.09005 * 109.62687 * 57.38592 * 16 14 13 38 38 H 0.96997 * 121.95482 * 223.24219 * 17 16 14 39 39 H 1.08001 * 126.19973 * 0.14188 * 19 18 17 40 40 H 1.08001 * 125.80837 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.56789 * 220.87536 * 23 22 18 42 42 H 1.09005 * 109.66511 * 100.57924 * 23 22 18 43 43 H 1.08003 * 119.99478 * 359.97438 * 25 24 10 44 44 H 1.08002 * 120.00275 * 180.24915 * 26 25 24 45 45 H 1.07990 * 120.00458 * 179.76873 * 27 26 25 46 46 H 1.08000 * 120.00179 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.00209 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2127 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9292 -3.5553 -0.8423 12 7 3.0081 -3.6540 1.2548 13 6 4.3092 -4.3142 1.0842 14 6 5.0729 -4.2866 2.4098 15 1 4.4553 -4.7291 3.1913 16 6 5.3991 -2.8351 2.7793 17 7 6.0723 -2.8260 4.0931 18 6 7.0493 -3.8048 4.2894 19 6 7.9772 -3.9096 5.2656 20 6 8.7251 -5.0678 5.0169 21 7 8.2597 -5.6353 3.9302 22 7 7.2029 -4.8625 3.4506 23 6 6.3693 -5.0921 2.2676 24 6 1.4957 -4.9637 -0.1243 25 6 0.8987 -5.5262 0.9884 26 6 0.2071 -6.7176 0.8738 27 6 0.1210 -7.3517 -0.3515 28 6 0.7227 -6.7921 -1.4631 29 6 1.4099 -5.5980 -1.3496 30 1 -0.4850 0.8401 0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6245 -2.5571 0.8896 33 1 2.4808 -4.0815 2.0013 34 1 4.8854 -3.7904 0.3216 35 1 4.1544 -5.3482 0.7761 36 1 6.0596 -2.4052 2.0263 37 1 4.4775 -2.2557 2.8360 38 1 5.8493 -2.1782 4.7797 39 1 8.1175 -3.2242 6.0885 40 1 9.5455 -5.4314 5.6178 41 1 6.1329 -6.1532 2.1880 42 1 6.9036 -4.7691 1.3741 43 1 0.9697 -5.0330 1.9466 44 1 -0.2627 -7.1550 1.7424 45 1 -0.4160 -8.2844 -0.4403 46 1 0.6558 -7.2878 -2.4204 47 1 1.8803 -5.1610 -2.2180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610972156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:32 Heat of formation + Delta-G solvation = 109.411980 kcal Electronic energy + Delta-G solvation = -27357.765913 eV Core-core repulsion = 23734.687403 eV Total energy + Delta-G solvation = -3623.078509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35440 -39.36826 -37.66470 -35.80243 -33.85303 -32.74381 -31.68357 -30.70567 -29.77222 -28.92657 -28.34063 -25.50659 -24.97890 -23.88653 -22.43578 -21.94884 -21.48495 -20.93132 -19.89496 -19.12822 -17.33768 -17.03147 -16.13596 -16.02861 -15.75193 -15.08164 -15.05307 -14.86639 -14.62838 -14.38166 -14.27091 -13.71341 -13.50240 -13.36555 -13.10783 -13.00936 -12.68098 -12.50717 -12.32275 -12.11947 -11.94826 -11.27905 -11.20874 -11.13179 -11.07809 -10.82839 -10.71600 -10.55972 -10.49287 -10.24814 -10.22489 -9.71552 -9.09216 -8.80988 -8.70246 -8.35647 -8.30608 -7.89908 -7.60311 -5.96658 -3.95641 1.61703 1.62680 2.15929 2.43417 3.00328 3.31423 3.37108 3.39903 3.42750 4.02448 4.21115 4.48257 4.58239 4.74138 4.90928 4.98655 5.09136 5.11822 5.18239 5.22884 5.33998 5.37297 5.40352 5.41524 5.57162 5.69464 5.72667 5.73927 5.78290 5.78673 5.96272 5.98962 6.02990 6.11632 6.23036 6.28628 6.42006 6.67219 6.69584 6.70771 6.80788 6.88203 7.24469 7.32942 7.36377 7.52206 7.54950 7.83287 7.87337 8.03238 8.03748 8.46009 9.09523 9.66219 11.15095 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007963 B = 0.004218 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3515.399754 B = 6637.051328 C = 9610.449557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.053 3.947 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.491 4.491 8 H 0.060 0.940 9 C 0.042 3.958 10 C 0.131 3.869 11 H 0.076 0.924 12 N -0.657 5.657 13 C 0.069 3.931 14 C -0.114 4.114 15 H 0.083 0.917 16 C 0.127 3.873 17 N -0.736 5.736 18 C 0.363 3.637 19 C -0.346 4.346 20 C 0.067 3.933 21 N -0.313 5.313 22 N -0.399 5.399 23 C 0.142 3.858 24 C -0.092 4.092 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.136 4.136 28 C -0.121 4.121 29 C -0.117 4.117 30 H 0.257 0.743 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.334 0.666 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.419 0.581 39 H 0.142 0.858 40 H 0.179 0.821 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.629 -11.966 5.209 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.530 4.530 8 H 0.078 0.922 9 C 0.005 3.995 10 C 0.021 3.979 11 H 0.094 0.906 12 N -0.288 5.288 13 C -0.062 4.062 14 C -0.135 4.135 15 H 0.101 0.899 16 C 0.003 3.997 17 N -0.377 5.377 18 C 0.138 3.862 19 C -0.380 4.380 20 C -0.119 4.119 21 N -0.134 5.134 22 N -0.188 5.188 23 C 0.020 3.980 24 C -0.094 4.094 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.154 4.154 28 C -0.139 4.139 29 C -0.135 4.135 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.153 0.847 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.257 0.743 39 H 0.159 0.841 40 H 0.196 0.804 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.739 -12.236 4.025 15.566 hybrid contribution -0.205 0.925 0.774 1.223 sum 8.534 -11.311 4.799 14.960 Atomic orbital electron populations 1.69971 1.06003 1.26239 1.51869 1.24991 0.94734 0.99030 0.95978 0.86600 0.80111 0.84232 0.77361 1.19827 1.21391 1.21295 1.21114 0.93133 0.90016 1.48695 0.92160 1.19088 0.92724 0.90348 0.97344 1.20967 0.94916 0.90981 0.91011 0.90566 1.60673 1.03397 1.57306 1.07387 1.21836 0.92292 0.97304 0.94773 1.21826 0.94883 0.96698 1.00090 0.89891 1.21780 0.98699 0.95783 0.83401 1.44400 1.40766 1.34369 1.18193 1.18208 0.90965 0.85475 0.91588 1.20294 1.04556 1.06377 1.06794 1.23631 0.99424 0.94145 0.94729 1.77243 1.03185 1.18252 1.14759 1.48545 1.28443 1.18599 1.23244 1.21668 0.89590 1.01730 0.85042 1.21140 0.97811 0.97138 0.93265 1.20948 0.98384 0.95773 0.98712 1.21063 0.99359 0.95844 0.97438 1.21024 1.01022 1.00167 0.93215 1.21096 0.98264 0.96254 0.98258 1.21089 0.99869 0.95202 0.97380 0.93281 0.96259 0.96273 0.84668 0.90368 0.95081 0.92052 0.86797 0.74308 0.84054 0.80406 0.89148 0.90171 0.86265 0.86619 0.86765 0.86616 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.49 -12.71 8.84 -34.44 -0.30 -13.02 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.04 0.99 4.63 -27.89 -0.13 0.86 16 10 C 0.13 2.33 2.17 -68.87 -0.15 2.18 16 11 H 0.08 1.38 7.66 -51.93 -0.40 0.98 16 12 N -0.66 -10.12 5.36 -107.95 -0.58 -10.69 16 13 C 0.07 0.86 4.85 -3.82 -0.02 0.84 16 14 C -0.11 -1.32 2.50 -90.32 -0.23 -1.55 16 15 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 16 C 0.13 1.57 6.29 -3.28 -0.02 1.55 16 17 N -0.74 -8.68 6.08 -59.50 -0.36 -9.04 16 18 C 0.36 4.86 7.58 -152.76 -1.16 3.70 16 19 C -0.35 -4.31 10.83 -40.00 -0.43 -4.75 16 20 C 0.07 0.83 12.03 -17.15 -0.21 0.63 16 21 N -0.31 -4.59 12.63 30.72 0.39 -4.20 16 22 N -0.40 -5.57 4.07 -60.27 -0.25 -5.82 16 23 C 0.14 1.67 6.62 -3.88 -0.03 1.64 16 24 C -0.09 -1.47 4.71 -104.62 -0.49 -1.97 16 25 C -0.12 -1.79 9.12 -39.59 -0.36 -2.15 16 26 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 27 C -0.14 -1.74 10.05 -39.58 -0.40 -2.13 16 28 C -0.12 -1.60 10.05 -39.58 -0.40 -1.99 16 29 C -0.12 -1.75 9.67 -39.58 -0.38 -2.13 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.33 4.90 6.34 -39.29 -0.25 4.65 16 34 H 0.08 1.00 8.06 -51.93 -0.42 0.59 16 35 H 0.03 0.38 8.00 -51.93 -0.42 -0.04 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.11 1.54 7.69 -51.93 -0.40 1.14 16 38 H 0.42 4.14 8.96 -40.82 -0.37 3.78 16 39 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 43 H 0.12 1.70 6.50 -52.48 -0.34 1.36 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 47 H 0.12 1.67 8.04 -52.49 -0.42 1.25 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -31.00 384.13 -11.69 -42.69 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.20 Total: 9.66 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -5.20 Total: -18.93 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.06 Total: -55.17 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.00 -11.69 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610972156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.104 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds