Wall clock time and date at job start Tue Mar 31 2020 14:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00331 * 2 1 4 4 H 1.48499 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47555 * 300.00658 * 3 2 1 6 6 H 1.48506 * 109.46854 * 60.00835 * 3 2 1 7 7 C 1.37881 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00321 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47419 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47182 * 305.00423 * 10 9 7 12 12 N 1.46905 * 109.46646 * 65.00173 * 10 9 7 13 13 C 1.46899 * 110.99692 * 204.99930 * 12 10 9 14 14 C 1.53004 * 109.47314 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.33518 * 54.78782 * 14 13 12 16 16 C 1.53286 * 109.40048 * 294.99896 * 14 13 12 17 17 N 1.47629 * 108.50609 * 177.08334 * 16 14 13 18 18 C 1.39685 * 116.08433 * 43.25308 * 17 16 14 19 19 C 1.35090 * 129.51793 * 167.35679 * 18 17 16 20 20 C 1.40097 * 107.60692 * 180.18041 * 19 18 17 21 21 N 1.31133 * 108.38696 * 359.97438 * 20 19 18 22 22 N 1.35863 * 122.53511 * 347.47801 * 18 17 16 23 23 C 1.46528 * 123.78773 * 359.76368 * 22 18 17 24 24 C 1.50698 * 109.47418 * 184.99830 * 10 9 7 25 25 C 1.38234 * 120.00446 * 279.73456 * 24 10 9 26 26 C 1.38232 * 120.00280 * 179.76428 * 25 24 10 27 27 C 1.38235 * 119.99991 * 0.48229 * 26 25 24 28 28 C 1.38238 * 119.99959 * 359.78694 * 27 26 25 29 29 C 1.38237 * 119.99912 * 359.96150 * 28 27 26 30 30 H 0.96999 * 119.99766 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46818 * 60.00073 * 9 7 2 32 32 H 1.08998 * 109.47069 * 300.00769 * 9 7 2 33 33 H 1.00896 * 111.00308 * 81.04918 * 12 10 9 34 34 H 1.08998 * 109.47785 * 60.00028 * 13 12 10 35 35 H 1.09000 * 109.47671 * 300.00028 * 13 12 10 36 36 H 1.08998 * 109.63138 * 296.79606 * 16 14 13 37 37 H 1.09005 * 109.62687 * 57.38592 * 16 14 13 38 38 H 0.96997 * 121.95482 * 223.24219 * 17 16 14 39 39 H 1.08001 * 126.19973 * 0.14188 * 19 18 17 40 40 H 1.08001 * 125.80837 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.56789 * 220.87536 * 23 22 18 42 42 H 1.09005 * 109.66511 * 100.57924 * 23 22 18 43 43 H 1.08003 * 119.99478 * 359.97438 * 25 24 10 44 44 H 1.08002 * 120.00275 * 180.24915 * 26 25 24 45 45 H 1.07990 * 120.00458 * 179.76873 * 27 26 25 46 46 H 1.08000 * 120.00179 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.00209 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2127 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9292 -3.5553 -0.8423 12 7 3.0081 -3.6540 1.2548 13 6 4.3092 -4.3142 1.0842 14 6 5.0729 -4.2866 2.4098 15 1 4.4553 -4.7291 3.1913 16 6 5.3991 -2.8351 2.7793 17 7 6.0723 -2.8260 4.0931 18 6 7.0493 -3.8048 4.2894 19 6 7.9772 -3.9096 5.2656 20 6 8.7251 -5.0678 5.0169 21 7 8.2597 -5.6353 3.9302 22 7 7.2029 -4.8625 3.4506 23 6 6.3693 -5.0921 2.2676 24 6 1.4957 -4.9637 -0.1243 25 6 0.8987 -5.5262 0.9884 26 6 0.2071 -6.7176 0.8738 27 6 0.1210 -7.3517 -0.3515 28 6 0.7227 -6.7921 -1.4631 29 6 1.4099 -5.5980 -1.3496 30 1 -0.4850 0.8401 0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6245 -2.5571 0.8896 33 1 2.4808 -4.0815 2.0013 34 1 4.8854 -3.7904 0.3216 35 1 4.1544 -5.3482 0.7761 36 1 6.0596 -2.4052 2.0263 37 1 4.4775 -2.2557 2.8360 38 1 5.8493 -2.1782 4.7797 39 1 8.1175 -3.2242 6.0885 40 1 9.5455 -5.4314 5.6178 41 1 6.1329 -6.1532 2.1880 42 1 6.9036 -4.7691 1.3741 43 1 0.9697 -5.0330 1.9466 44 1 -0.2627 -7.1550 1.7424 45 1 -0.4160 -8.2844 -0.4403 46 1 0.6558 -7.2878 -2.4204 47 1 1.8803 -5.1610 -2.2180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610972156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:31 Heat of formation + Delta-G solvation = 91.564045 kcal Electronic energy + Delta-G solvation = -27358.539857 eV Core-core repulsion = 23734.687403 eV Total energy + Delta-G solvation = -3623.852454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.32458 -40.53125 -38.69503 -37.03384 -35.10860 -34.41826 -32.88642 -31.77984 -30.85029 -30.38443 -29.56181 -26.74515 -26.24054 -25.15327 -23.75068 -23.25313 -22.48852 -21.92311 -21.20081 -20.17739 -18.57732 -18.28029 -17.72054 -17.01980 -16.80672 -16.48170 -16.24147 -16.20113 -15.80549 -15.57412 -15.31318 -14.84573 -14.57624 -14.44859 -14.35136 -14.22432 -14.11316 -13.66606 -13.56564 -13.35813 -13.22997 -12.83486 -12.75714 -12.39079 -12.29084 -12.22590 -12.13347 -11.92317 -11.71712 -11.51357 -11.44681 -11.21833 -11.05594 -10.47357 -9.78653 -9.77725 -9.51682 -9.14883 -8.57969 -8.06895 -6.11793 0.50957 0.53690 1.17092 1.43221 1.45522 1.48980 1.56557 2.06286 2.42333 2.49056 2.92700 3.13428 3.29076 3.60304 3.66280 3.87362 3.99881 4.02371 4.04294 4.19129 4.26114 4.31897 4.36965 4.47305 4.50793 4.62796 4.69111 4.71097 4.74480 4.78542 4.80280 4.95032 5.03422 5.07796 5.12479 5.17025 5.19877 5.45479 5.52953 5.60570 5.63445 5.65047 5.71581 5.90537 5.92606 6.16894 6.29151 6.37546 6.43641 6.60549 6.62322 7.02939 7.09189 7.54289 9.05389 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007963 B = 0.004218 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3515.399754 B = 6637.051328 C = 9610.449557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.004 4.004 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.492 4.492 8 H 0.065 0.935 9 C 0.052 3.948 10 C 0.148 3.852 11 H 0.071 0.929 12 N -0.666 5.666 13 C 0.079 3.921 14 C -0.097 4.097 15 H 0.080 0.920 16 C 0.131 3.869 17 N -0.731 5.731 18 C 0.346 3.654 19 C -0.351 4.351 20 C 0.069 3.931 21 N -0.346 5.346 22 N -0.411 5.411 23 C 0.141 3.859 24 C -0.112 4.112 25 C -0.133 4.133 26 C -0.123 4.123 27 C -0.133 4.133 28 C -0.122 4.122 29 C -0.133 4.133 30 H 0.257 0.743 31 H -0.015 1.015 32 H -0.009 1.009 33 H 0.337 0.663 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.427 0.573 39 H 0.161 0.839 40 H 0.212 0.788 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.118 0.882 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.822 -13.255 5.715 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.200 4.200 3 Si 0.780 3.220 4 H -0.184 1.184 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.530 4.530 8 H 0.083 0.917 9 C 0.015 3.985 10 C 0.038 3.962 11 H 0.089 0.911 12 N -0.297 5.297 13 C -0.051 4.051 14 C -0.118 4.118 15 H 0.098 0.902 16 C 0.007 3.993 17 N -0.373 5.373 18 C 0.121 3.879 19 C -0.385 4.385 20 C -0.117 4.117 21 N -0.167 5.167 22 N -0.201 5.201 23 C 0.019 3.981 24 C -0.114 4.114 25 C -0.151 4.151 26 C -0.141 4.141 27 C -0.151 4.151 28 C -0.140 4.140 29 C -0.151 4.151 30 H 0.066 0.934 31 H 0.003 0.997 32 H 0.009 0.991 33 H 0.157 0.843 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.267 0.733 39 H 0.178 0.822 40 H 0.228 0.772 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.136 0.864 44 H 0.158 0.842 45 H 0.164 0.836 46 H 0.160 0.840 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.953 -13.531 4.542 17.400 hybrid contribution -0.593 1.259 0.638 1.531 sum 9.360 -12.272 5.180 16.280 Atomic orbital electron populations 1.70112 1.07690 1.26946 1.53638 1.25815 0.95446 1.02676 0.96020 0.85573 0.79423 0.79978 0.77057 1.18450 1.21456 1.21192 1.21488 0.93472 0.91014 1.47020 0.91653 1.18863 0.93086 0.92323 0.94233 1.20442 0.93787 0.90067 0.91923 0.91059 1.60512 1.04284 1.58451 1.06454 1.21744 0.90665 0.97445 0.95291 1.21619 0.94732 0.96232 0.99248 0.90204 1.21656 0.97967 0.95997 0.83698 1.44350 1.40454 1.34338 1.18135 1.18528 0.91564 0.85737 0.92058 1.20656 1.04107 1.06751 1.07025 1.24237 0.99693 0.93674 0.94121 1.77200 1.04071 1.19395 1.16067 1.48706 1.28730 1.18843 1.23779 1.21714 0.89297 1.02143 0.84905 1.20963 0.99162 0.96813 0.94445 1.21062 0.98952 0.96707 0.98377 1.21390 0.98705 0.95128 0.98847 1.21445 1.00117 1.00963 0.92556 1.21431 0.97284 0.95486 0.99799 1.21265 1.00631 0.96233 0.96996 0.93447 0.99698 0.99110 0.84264 0.90534 0.94136 0.92639 0.88027 0.73338 0.82189 0.77191 0.88392 0.89623 0.86395 0.84232 0.83645 0.83982 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.36 13.29 21.45 0.28 -56.07 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 6 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.49 -26.02 8.84 25.60 0.23 -25.80 16 8 H 0.07 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.05 2.57 4.63 29.85 0.14 2.71 16 10 C 0.15 5.41 2.17 44.17 0.10 5.50 16 11 H 0.07 2.64 7.66 -2.39 -0.02 2.62 16 12 N -0.67 -20.75 5.36 -495.46 -2.66 -23.40 16 13 C 0.08 1.94 4.85 86.30 0.42 2.36 16 14 C -0.10 -2.19 2.50 -10.60 -0.03 -2.22 16 15 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 16 C 0.13 3.18 6.29 86.26 0.54 3.72 16 17 N -0.73 -16.58 6.08 -342.16 -2.08 -18.66 16 18 C 0.35 8.86 7.58 130.83 0.99 9.85 16 19 C -0.35 -8.12 10.83 22.00 0.24 -7.89 16 20 C 0.07 1.56 12.03 85.25 1.03 2.59 16 21 N -0.35 -9.69 12.63 -56.72 -0.72 -10.41 16 22 N -0.41 -11.05 4.07 -344.59 -1.40 -12.45 16 23 C 0.14 3.18 6.62 86.47 0.57 3.76 16 24 C -0.11 -3.63 4.71 -19.87 -0.09 -3.72 16 25 C -0.13 -3.92 9.12 22.27 0.20 -3.72 16 26 C -0.12 -3.05 10.05 22.27 0.22 -2.82 16 27 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 28 C -0.12 -2.98 10.05 22.27 0.22 -2.76 16 29 C -0.13 -3.91 9.67 22.27 0.22 -3.69 16 30 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 31 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H 0.34 10.06 6.34 -89.70 -0.57 9.49 16 34 H 0.08 1.92 8.06 -2.39 -0.02 1.90 16 35 H 0.04 0.94 8.00 -2.39 -0.02 0.92 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 2.74 7.69 -2.38 -0.02 2.72 16 38 H 0.43 8.04 8.96 -92.71 -0.83 7.21 16 39 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 40 H 0.21 3.05 8.06 -2.91 -0.02 3.02 16 41 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.09 1.82 8.12 -2.38 -0.02 1.80 16 43 H 0.12 3.41 6.50 -2.91 -0.02 3.39 16 44 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 45 H 0.15 2.39 8.06 -2.92 -0.02 2.36 16 46 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 47 H 0.12 3.40 8.04 -2.91 -0.02 3.38 16 Total: -1.00 -67.84 384.13 0.71 -67.13 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -0.42 Total: 32.97 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 5.68 Total: -24.66 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -6.57 Total: -120.99 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -67.84 0.71 -67.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610972156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.691 kcal (2) G-P(sol) polarization free energy of solvation -67.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds