Wall clock time and date at job start Tue Mar 31 2020 14:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48507 * 109.47138 * 270.00438 * 3 2 1 5 5 H 1.48500 * 109.47169 * 30.00096 * 3 2 1 6 6 H 1.48498 * 109.46996 * 150.00433 * 3 2 1 7 7 C 1.37881 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00236 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99790 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.46686 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.47358 * 55.00944 * 10 9 7 12 12 N 1.46899 * 109.47702 * 295.00245 * 10 9 7 13 13 C 1.46896 * 111.00255 * 155.00116 * 12 10 9 14 14 C 1.53000 * 109.47056 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.40699 * 304.83350 * 14 13 12 16 16 C 1.53276 * 109.33860 * 64.63227 * 14 13 12 17 17 N 1.47626 * 108.51316 * 182.86132 * 16 14 13 18 18 C 1.39692 * 116.08566 * 316.75537 * 17 16 14 19 19 C 1.35098 * 129.51660 * 192.53317 * 18 17 16 20 20 C 1.40092 * 107.60377 * 179.84451 * 19 18 17 21 21 N 1.31146 * 108.38867 * 0.08518 * 20 19 18 22 22 N 1.35864 * 122.53348 * 12.53173 * 18 17 16 23 23 C 1.46525 * 123.78517 * 0.20084 * 22 18 17 24 24 C 1.50707 * 109.46825 * 175.00127 * 10 9 7 25 25 C 1.38236 * 119.99554 * 79.73069 * 24 10 9 26 26 C 1.38244 * 119.99649 * 179.79201 * 25 24 10 27 27 C 1.38234 * 119.99824 * 0.43385 * 26 25 24 28 28 C 1.38237 * 120.00246 * 359.81563 * 27 26 25 29 29 C 1.38230 * 120.00100 * 260.00092 * 24 10 9 30 30 H 0.96999 * 120.00618 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46540 * 60.00386 * 9 7 2 32 32 H 1.08992 * 109.47338 * 300.00332 * 9 7 2 33 33 H 1.00904 * 111.00068 * 278.95980 * 12 10 9 34 34 H 1.09002 * 109.46791 * 60.00530 * 13 12 10 35 35 H 1.08999 * 109.47221 * 300.00524 * 13 12 10 36 36 H 1.09007 * 109.62861 * 302.56861 * 16 14 13 37 37 H 1.08995 * 109.63125 * 62.95305 * 16 14 13 38 38 H 0.96991 * 121.95820 * 136.76861 * 17 16 14 39 39 H 1.08002 * 126.19609 * 359.91341 * 19 18 17 40 40 H 1.07991 * 125.80665 * 180.02562 * 20 19 18 41 41 H 1.08997 * 109.56643 * 259.50544 * 23 22 18 42 42 H 1.09009 * 109.56219 * 139.15682 * 23 22 18 43 43 H 1.08001 * 120.00130 * 359.97438 * 25 24 10 44 44 H 1.07997 * 119.99855 * 180.27305 * 26 25 24 45 45 H 1.07999 * 119.99958 * 179.83549 * 27 26 25 46 46 H 1.07993 * 119.99973 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.00027 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0214 -2.6365 -0.0010 11 1 3.5866 -3.1757 -0.8426 12 7 3.6333 -3.2931 1.2544 13 6 3.5544 -4.7500 1.0841 14 6 3.1479 -5.3972 2.4096 15 1 3.8428 -5.0897 3.1909 16 6 1.7312 -4.9455 2.7815 17 7 1.3842 -5.5242 4.0945 18 6 1.7350 -6.8624 4.2880 19 6 1.3586 -7.7173 5.2642 20 6 1.9792 -8.9477 5.0123 21 7 2.7025 -8.8313 3.9245 22 7 2.5692 -7.5281 3.4473 23 6 3.1872 -6.9228 2.2646 24 6 5.5234 -2.6383 -0.1254 25 6 6.3091 -2.3914 0.9848 26 6 7.6869 -2.3973 0.8717 27 6 8.2786 -2.6413 -0.3535 28 6 7.4928 -2.8832 -1.4648 29 6 6.1151 -2.8814 -1.3507 30 1 -0.4851 0.8400 0.0004 31 1 3.8751 -0.6804 0.8889 32 1 3.8745 -0.6800 -0.8910 33 1 4.2674 -3.0501 2.0007 34 1 4.5273 -5.1329 0.7758 35 1 2.8124 -4.9871 0.3217 36 1 1.6973 -3.8576 2.8402 37 1 1.0259 -5.2935 2.0268 38 1 0.9387 -5.0056 4.7825 39 1 0.6981 -7.4930 6.0887 40 1 1.8797 -9.8400 5.6123 41 1 2.6356 -7.2190 1.3725 42 1 4.2222 -7.2552 2.1831 43 1 5.8466 -2.1967 1.9412 44 1 8.3008 -2.2087 1.7399 45 1 9.3550 -2.6433 -0.4425 46 1 7.9552 -3.0734 -2.4220 47 1 5.5012 -3.0705 -2.2189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610972158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:38 Heat of formation + Delta-G solvation = 113.313686 kcal Electronic energy + Delta-G solvation = -27382.188960 eV Core-core repulsion = 23759.279641 eV Total energy + Delta-G solvation = -3622.909319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31869 -39.47997 -37.66565 -35.86744 -33.83883 -32.68183 -31.74593 -30.80939 -29.81595 -29.24863 -28.52491 -25.54227 -25.03089 -23.88589 -22.46716 -21.78796 -21.44741 -20.91276 -19.90243 -19.09960 -17.33578 -17.19804 -16.43949 -15.98712 -15.74860 -15.20963 -15.14754 -14.83053 -14.61525 -14.29900 -14.20677 -13.66809 -13.49116 -13.41944 -13.26996 -13.14911 -12.67421 -12.57063 -12.38583 -12.33112 -12.02702 -11.38774 -11.32133 -11.25422 -11.11277 -10.92121 -10.79355 -10.49831 -10.38962 -10.22849 -10.13264 -9.74083 -9.15737 -8.81164 -8.77712 -8.50998 -8.45642 -7.96055 -7.55803 -5.99986 -3.94889 1.50035 1.51446 2.19379 2.46620 3.03802 3.30275 3.38852 3.41568 3.42008 3.91678 4.20637 4.47205 4.60795 4.71942 4.89919 4.99504 5.00849 5.02265 5.09918 5.22387 5.25049 5.33840 5.37021 5.44220 5.59960 5.63874 5.66966 5.72394 5.76327 5.76781 5.91345 6.01327 6.05741 6.12067 6.16815 6.17605 6.45403 6.48420 6.58033 6.59564 6.74853 6.84191 7.03646 7.12252 7.15056 7.38071 7.56684 7.58016 7.73816 7.85366 8.07522 8.60116 9.09435 9.62927 11.13486 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.003892 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.235291 B = 7193.235485 C = 9606.533595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.871 3.129 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.492 4.492 8 H 0.078 0.922 9 C 0.005 3.995 10 C 0.141 3.859 11 H 0.082 0.918 12 N -0.656 5.656 13 C 0.070 3.930 14 C -0.114 4.114 15 H 0.082 0.918 16 C 0.127 3.873 17 N -0.735 5.735 18 C 0.363 3.637 19 C -0.346 4.346 20 C 0.067 3.933 21 N -0.314 5.314 22 N -0.399 5.399 23 C 0.142 3.858 24 C -0.098 4.098 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.134 4.134 28 C -0.120 4.120 29 C -0.116 4.116 30 H 0.260 0.740 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.333 0.667 34 H 0.031 0.969 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.419 0.581 39 H 0.142 0.858 40 H 0.179 0.821 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.495 -11.148 5.204 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.699 3.301 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.096 0.904 9 C -0.033 4.033 10 C 0.031 3.969 11 H 0.100 0.900 12 N -0.286 5.286 13 C -0.061 4.061 14 C -0.135 4.135 15 H 0.100 0.900 16 C 0.004 3.996 17 N -0.376 5.376 18 C 0.138 3.862 19 C -0.381 4.381 20 C -0.119 4.119 21 N -0.135 5.135 22 N -0.189 5.189 23 C 0.020 3.980 24 C -0.100 4.100 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.152 4.152 28 C -0.138 4.138 29 C -0.134 4.134 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.153 0.847 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.257 0.743 39 H 0.160 0.840 40 H 0.196 0.804 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.544 -11.442 4.023 16.071 hybrid contribution 0.716 1.455 0.758 1.790 sum 11.261 -9.986 4.781 15.792 Atomic orbital electron populations 1.69890 1.06118 1.26524 1.52024 1.24960 0.94620 0.98673 0.95253 0.86934 0.80393 0.84475 0.78329 1.20599 1.21589 1.19256 1.20953 0.88644 0.94365 1.49060 0.90354 1.19575 0.97839 0.89543 0.96344 1.20699 0.85709 0.98840 0.91651 0.89986 1.60591 1.55738 1.05210 1.07042 1.21827 0.99809 0.89411 0.95019 1.21818 0.99292 0.92459 0.99895 0.89980 1.21770 0.93332 1.01078 0.83450 1.44407 1.67959 1.07064 1.18205 1.18221 0.90855 0.85586 0.91517 1.20293 1.17104 0.93886 1.06785 1.23626 0.95402 0.98199 0.94698 1.77241 1.26107 0.95361 1.14816 1.48533 1.38444 1.08663 1.23230 1.21666 0.99086 0.92144 0.85108 1.21172 0.98624 0.96772 0.93382 1.20974 0.93571 1.00622 0.98741 1.21078 0.94826 1.00351 0.97473 1.21051 0.99393 1.01625 0.93180 1.21118 0.93981 1.00397 0.98346 1.21113 0.94631 1.00304 0.97378 0.92972 0.96380 0.96788 0.84729 0.95076 0.90164 0.86723 0.91896 0.74281 0.84048 0.80428 0.90137 0.89201 0.86188 0.86542 0.86673 0.86499 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.89 13.96 55.43 0.77 -26.12 16 2 C 0.06 1.80 5.47 -17.82 -0.10 1.71 16 3 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.49 -12.85 9.39 -34.44 -0.32 -13.18 16 8 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 0.10 3.70 -27.88 -0.10 0.00 16 10 C 0.14 2.40 2.17 -68.86 -0.15 2.25 16 11 H 0.08 1.44 7.66 -51.93 -0.40 1.04 16 12 N -0.66 -9.93 5.34 -107.95 -0.58 -10.50 16 13 C 0.07 0.88 4.85 -3.83 -0.02 0.86 16 14 C -0.11 -1.34 2.51 -90.32 -0.23 -1.56 16 15 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 16 C 0.13 1.65 6.28 -3.28 -0.02 1.63 16 17 N -0.74 -9.03 6.08 -59.50 -0.36 -9.40 16 18 C 0.36 5.00 7.58 -152.75 -1.16 3.84 16 19 C -0.35 -4.43 10.83 -40.00 -0.43 -4.86 16 20 C 0.07 0.85 12.03 -17.15 -0.21 0.64 16 21 N -0.31 -4.67 12.63 30.72 0.39 -4.29 16 22 N -0.40 -5.68 4.07 -60.26 -0.25 -5.93 16 23 C 0.14 1.70 6.62 -3.88 -0.03 1.68 16 24 C -0.10 -1.47 4.71 -104.62 -0.49 -1.96 16 25 C -0.12 -1.68 9.11 -39.58 -0.36 -2.04 16 26 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 27 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 28 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 29 C -0.12 -1.62 9.67 -39.58 -0.38 -2.00 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 32 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 33 H 0.33 4.70 6.36 -39.29 -0.25 4.45 16 34 H 0.03 0.37 8.00 -51.93 -0.42 -0.04 16 35 H 0.08 1.05 8.06 -51.93 -0.42 0.64 16 36 H 0.11 1.65 7.68 -51.92 -0.40 1.25 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.42 4.38 8.96 -40.82 -0.37 4.02 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 42 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 43 H 0.12 1.58 6.53 -52.49 -0.34 1.24 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 47 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -31.39 380.53 -11.31 -42.71 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -7.17 Total: 10.11 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -5.19 Total: -18.75 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.02 Total: -56.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.39 -11.31 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610972158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.021 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds